Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013335

Physical Location & Seq

Genomic Coordinates Reverse (-)

55274257 .. 55277797

Gene Structure 3541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0431000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCCTTCTTGGTCAAGCCTAGTAACTGTCACCACTTATCTTTAACTGCCATGGCAATGTCCTCAAGCTTCTGCCCTCATATCCCAAACCACTTGAGAAGTAGACCCATTTGCTCATTCCCTACAAAACCTCTCTCTCTTTCTCTCAAGGCCTTCTCTTCCCAACCATCCAAGGCTTCATCCACAGATGAATTGCCAGCACGTGTGGGTTTCCTTGGTCTTGGAATTATGGGTTCTCCGATGGCACAGAACCTTATAAAATCTGGGTGTGATGTGACTGTTTGGAATAGGACGAAGAGCAAATGTGATCCACTCATCAGCTTAGGTGCAAAATATAAACCCTCTCCTGCAGAAGTAGCTGCATCTTGTGATGTCACATTTGCTATGCTTGCTGACCCTGAAAGTGCTGTTGACGTTGCCCTGGGGAAGCATGGAGCTGCTAGTGGAATGAGTTCAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGGTGAAACTTCTAAACTGATTGGTGGTCATATCAAAGCTACTGGGGCATTATTTTTGGAGGCTCCAGTTTCAGGCTCAAAAAAACCAGCAGAAGATGGGCAACTAATATTTCTTACTGCAGGTGACAAATCTTTGTATGAAATAGCAGCACCGCTTTTGGACATCATGGGGAAGTCAAGATTTTACCTTGGAGAGGTTGGAAATGGTGCTGCCATGAAACTTGTTGTCAACATGATCATGGGAAGTATGATGGCATCATTTTCAGAAGGGTTGGTTCTCACTGAGAAAATAGGACTGGACCCAAAAGTACTAGTTGAGGTGGTCTCACAGGGTGCCATTAGCGCACCAATGTACTCACTCAAAGGCCCGTCAATGATTCAATCTCTCTACCCTACTGCATTTCCCTTGAAGCATCAACAAAAGGACATGAGGCTTGCTCTGGGATTAGCAGAATCTGTTTCCCAATCTACGCCGATTGCAGCAGCTGCAAATGAACTTTACAAGGTTGCAAAGTCACATGGCCTTAGCGATGAGGACTTTTCAGCAGTCATTGAAGCATTGAAACCGAAGTTGAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016427 GO:0016428 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F PUA

Protein Analysis

356

Amino Acids

37.39

Weight (kDa)

8.6

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	68 - 227	4.8e-43	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	230 - 349	1.3e-27	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06560
fragaria_vesca	FvH4_6g38630 FvH4_6g38630
malus_domestica	MD09G1148800.v1.1 MD17G1135100.v1.1
prunus_persica	Prupe.3G177300_v2.0.a1 Prupe.3G177300_v2.0.a1
pyrus_communis	pycom09g06840 pycom17g12920
rosa_chinensis	RchiOBHm_Chr2g0152091
rosa_laevigata	RLG00000020607
rosa_multiflora	Rmu_co8372479.1_g000001 Rmu_sc0000760.1_g000014
rosa_roxburghii	Rroxscaffold_2G00095940
rosa_rugosa	Rorug02G0430900 Rorug02G0431000
rosa_samantha	Rh2DG515100
rosa_wichuraiana	Rw2G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AarI	CACCTGC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	821
AccI	GTMKAC	1 cut(s)	103
AciI	CCGC	1 cut(s)	641
AclWI	GGATC	1 cut(s)	302
AcvI	CACGTG	1 cut(s)	203
AdeI	CACNNNGTG	1 cut(s)	821
AfaI	GTAC	2 cut(s)	798, 842
AfiI	CCNNNNNNNGG	2 cut(s)	560, 682
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	6 cut(s)	480, 869, 898, 1043, 1051, 1063
AhlI	ACTAGT	1 cut(s)	799
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	6 cut(s)	69, 321, 359, 437, 527, 974
AluI	AGCT	6 cut(s)	69, 321, 359, 437, 527, 974
Alw26I	GTCTC	1 cut(s)	817
AlwI	GGATC	1 cut(s)	302
AlwNI	CAGNNNCTG	2 cut(s)	944, 974
AoxI	GGCC	3 cut(s)	150, 853, 1009
ApeKI	GCWGC	7 cut(s)	359, 437, 635, 698, 968, 971, 974
Asp700I	GAANNNNTTC	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	833
AspS9I	GGNCC	2 cut(s)	787, 854
AsuHPI	GGTGA	3 cut(s)	23, 503, 623
AvaII	GGWCC	1 cut(s)	787
BanI	GGYRCC	1 cut(s)	821
BbrPI	CACGTG	1 cut(s)	203
BbvI	GCAGC	7 cut(s)	346, 424, 647, 685, 961, 980, 983
BccI	CCATC	5 cut(s)	175, 235, 482, 578, 733
BciT130I	CCWGG	1 cut(s)	422
BclI	TGATCA	1 cut(s)	723
BcoDI	GTCTC	1 cut(s)	817
BcuI	ACTAGT	1 cut(s)	799
BfaI	CTAG	3 cut(s)	21, 441, 800
BfmI	CTRYAG	2 cut(s)	348, 606
BfuAI	ACCTGC	1 cut(s)	599
BisI	GCNGC	7 cut(s)	360, 438, 636, 699, 969, 972, 975
BlsI	GCNGC	7 cut(s)	361, 439, 637, 700, 970, 973, 976
BmcAI	AGTACT	1 cut(s)	798
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	787
BmgT120I	GGNCC	2 cut(s)	787, 854
BmiI	GGNNCC	3 cut(s)	552, 789, 823
BmrFI	CCNGG	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	371, 752, 910
BmuI	ACTGGG	1 cut(s)	540
BplI	GAGNNNNNCTC	4 cut(s)	797, 829, 910, 942
BpmI	CTGGAG	1 cut(s)	537
Bpu10I	CCTNAGC	2 cut(s)	322, 1013
BpuEI	CTTGAG	3 cut(s)	49, 115, 131
BsaAI	YACGTR	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	817
BsaJI	CCNNGG	6 cut(s)	51, 171, 214, 420, 421, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	560, 682
Bse1I	ACTGG	3 cut(s)	535, 554, 789
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	6 cut(s)	51, 171, 214, 420, 421, 676
BseGI	GGATG	3 cut(s)	167, 179, 478
BseLI	CCNNNNNNNGG	2 cut(s)	560, 682
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	3 cut(s)	535, 554, 789
BseXI	GCAGC	7 cut(s)	346, 424, 647, 685, 961, 980, 983
BshFI	GGCC	3 cut(s)	152, 855, 1011
BshNI	GGYRCC	1 cut(s)	821
BslI	CCNNNNNNNGG	2 cut(s)	560, 682
BsmAI	GTCTC	1 cut(s)	817
BsnI	GGCC	3 cut(s)	152, 855, 1011
Bso31I	GGTCTC	1 cut(s)	817
Bsp143I	GATC	2 cut(s)	307, 723
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	1 cut(s)	641
BspANI	GGCC	3 cut(s)	152, 855, 1011
BspCNI	CTCAG	1 cut(s)	763
BspLI	GGNNCC	3 cut(s)	552, 789, 823
BspMAI	CTGCAG	2 cut(s)	352, 610
BspMI	ACCTGC	1 cut(s)	599
BspPI	GGATC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	821
BspTNI	GGTCTC	1 cut(s)	817
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	3 cut(s)	535, 554, 789
BssECI	CCNNGG	6 cut(s)	51, 171, 214, 420, 421, 676
BssMI	GATC	2 cut(s)	307, 723
BssT1I	CCWWGG	4 cut(s)	51, 171, 214, 676
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	3 cut(s)	29, 280, 484
Bst6I	CTCTTC	2 cut(s)	163, 290
BstAPI	GCANNNNNTGC	1 cut(s)	974
BstBAI	YACGTR	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	198, 390, 924
BstDEI	CTNAG	3 cut(s)	322, 771, 1013
BstDSI	CCRYGG	1 cut(s)	51
BstENI	CCTNNNNNAGG	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	167, 179, 478
BstHHI	GCGC	1 cut(s)	833
BstKTI	GATC	2 cut(s)	310, 726
BstMAI	GTCTC	1 cut(s)	817
BstMBI	GATC	2 cut(s)	307, 723
BstMWI	GCNNNNNNNGC	5 cut(s)	356, 389, 533, 830, 974
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	2 cut(s)	348, 606
BstV1I	GCAGC	7 cut(s)	346, 424, 647, 685, 961, 980, 983
BsuRI	GGCC	3 cut(s)	152, 855, 1011
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	1032
BtsCI	GGATG	3 cut(s)	167, 179, 478
BtsIMutI	CAGTG	1 cut(s)	768
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	3 cut(s)	198, 390, 924
CaiI	CAGNNNCTG	2 cut(s)	944, 974
CfoI	GCGC	1 cut(s)	833
Cfr13I	GGNCC	2 cut(s)	787, 854
Csp6I	GTAC	2 cut(s)	797, 841
CviAII	CATG	8 cut(s)	52, 431, 655, 703, 721, 727, 916, 1007
CviQI	GTAC	2 cut(s)	797, 841
DdeI	CTNAG	3 cut(s)	322, 771, 1013
DpnI	GATC	2 cut(s)	309, 725
DpnII	GATC	2 cut(s)	307, 723
DraIII	CACNNNGTG	1 cut(s)	821
Eam1104I	CTCTTC	2 cut(s)	163, 290
EarI	CTCTTC	2 cut(s)	163, 290
Eco130I	CCWWGG	4 cut(s)	51, 171, 214, 676
Eco147I	AGGCCT	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	817
Eco47I	GGWCC	1 cut(s)	787
Eco72I	CACGTG	1 cut(s)	203
EcoNI	CCTNNNNNAGG	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	4 cut(s)	51, 171, 214, 676
ErhI	CCWWGG	4 cut(s)	51, 171, 214, 676
FaeI	CATG	8 cut(s)	55, 434, 658, 706, 724, 730, 919, 1010
FatI	CATG	8 cut(s)	51, 430, 654, 702, 720, 726, 915, 1006
FbaI	TGATCA	1 cut(s)	723
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	7 cut(s)	360, 438, 636, 699, 969, 972, 975
FokI	GGATG	3 cut(s)	154, 166, 485
Fsp4HI	GCNGC	7 cut(s)	360, 438, 636, 699, 969, 972, 975
FspBI	CTAG	3 cut(s)	21, 441, 800
GlaI	GCGC	1 cut(s)	832
GluI	GCNGC	7 cut(s)	360, 438, 636, 699, 969, 972, 975
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	3 cut(s)	152, 855, 1011
HhaI	GCGC	1 cut(s)	833
Hin1II	CATG	8 cut(s)	55, 434, 658, 706, 724, 730, 919, 1010
Hin6I	GCGC	1 cut(s)	831
HinP1I	GCGC	1 cut(s)	831
HincII	GTYRAC	2 cut(s)	412, 718
HindII	GTYRAC	2 cut(s)	412, 718
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	2 cut(s)	865, 941
HphI	GGTGA	3 cut(s)	23, 503, 623
Hpy166II	GTNNAC	3 cut(s)	104, 412, 718
Hpy188I	TCNGA	2 cut(s)	240, 754
Hpy188III	TCNNGA	2 cut(s)	456, 666
Hpy8I	GTNNAC	3 cut(s)	104, 412, 718
HpyAV	CCTTC	3 cut(s)	16, 163, 749
HpyCH4III	ACNGT	3 cut(s)	29, 280, 484
HpyCH4IV	ACGT	2 cut(s)	202, 414
HpyCH4V	TGCA	8 cut(s)	329, 350, 362, 608, 887, 968, 977, 998
HpyF10VI	GCNNNNNNNGC	5 cut(s)	356, 389, 533, 830, 974
HpyF3I	CTNAG	3 cut(s)	322, 771, 1013
HpySE526I	ACGT	2 cut(s)	202, 414
Hsp92II	CATG	8 cut(s)	55, 434, 658, 706, 724, 730, 919, 1010
HspAI	GCGC	1 cut(s)	831
Ksp22I	TGATCA	1 cut(s)	723
Kzo9I	GATC	2 cut(s)	307, 723
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	434, 556
Lsp1109I	GCAGC	7 cut(s)	346, 424, 647, 685, 961, 980, 983
LweI	GCATC	3 cut(s)	371, 752, 910
MaeI	CTAG	3 cut(s)	21, 441, 800
MaeII	ACGT	2 cut(s)	202, 414
MaeIII	GTNAC	6 cut(s)	23, 29, 274, 373, 611, 1002
MalI	GATC	2 cut(s)	309, 725
MboI	GATC	2 cut(s)	307, 723
MboII	GAAGA	3 cut(s)	150, 307, 593
MluCI	AATT	2 cut(s)	191, 225
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	9 cut(s)	73, 87, 141, 352, 541, 676, 799, 912, 1015
MroXI	GAANNNNTTC	1 cut(s)	451
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	2 cut(s)	56, 725
MspA1I	CMGCKG	1 cut(s)	974
MspR9I	CCNGG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	5 cut(s)	356, 389, 533, 830, 974
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	307, 723
NlaIII	CATG	8 cut(s)	55, 434, 658, 706, 724, 730, 919, 1010
NlaIV	GGNNCC	3 cut(s)	552, 789, 823
NmuCI	GTSAC	5 cut(s)	29, 274, 373, 611, 1002
PaqCI	CACCTGC	1 cut(s)	599
PasI	CCCWGGG	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	865, 941
PkrI	GCNGC	7 cut(s)	361, 439, 637, 700, 970, 973, 976
PmaCI	CACGTG	1 cut(s)	203
PmlI	CACGTG	1 cut(s)	203
Ppu21I	YACGTR	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	420
PspCI	CACGTG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	3 cut(s)	552, 789, 823
PspPI	GGNCC	2 cut(s)	787, 854
PstI	CTGCAG	2 cut(s)	352, 610
PstNI	CAGNNNCTG	2 cut(s)	944, 974
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	2 cut(s)	798, 842
RsaNI	GTAC	2 cut(s)	797, 841
RseI	CAYNNNNRTG	2 cut(s)	56, 725
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	7 cut(s)	360, 438, 636, 699, 969, 972, 975
Sau3AI	GATC	2 cut(s)	307, 723
Sau96I	GGNCC	2 cut(s)	787, 854
ScaI	AGTACT	1 cut(s)	798
ScrFI	CCNGG	1 cut(s)	422
SfaNI	GCATC	3 cut(s)	371, 752, 910
SfcI	CTRYAG	2 cut(s)	348, 606
SinI	GGWCC	1 cut(s)	787
SmiMI	CAYNNNNRTG	2 cut(s)	56, 725
SmlI	CTYRAG	3 cut(s)	64, 94, 146
SmoI	CTYRAG	3 cut(s)	64, 94, 146
SpeI	ACTAGT	1 cut(s)	799
Sse9I	AATT	2 cut(s)	191, 225
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	1 cut(s)	641
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	3 cut(s)	21, 441, 800
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	4 cut(s)	51, 171, 214, 676
TaaI	ACNGT	3 cut(s)	29, 280, 484
TaiI	ACGT	2 cut(s)	205, 417
TasI	AATT	2 cut(s)	191, 225
TatI	WGTACW	2 cut(s)	796, 840
TfiI	GAWTC	2 cut(s)	865, 941
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	5 cut(s)	29, 274, 373, 611, 1002
TseI	GCWGC	7 cut(s)	359, 437, 635, 698, 968, 971, 974
Tsp45I	GTSAC	5 cut(s)	29, 274, 373, 611, 1002
TspDTI	ATGAA	5 cut(s)	168, 204, 642, 719, 996
TspRI	CASTG	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	787
XagI	CCTNNNNNAGG	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	3 cut(s)	21, 441, 800
ZrmI	AGTACT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.