Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013335

Physical Location & Seq

Genomic Coordinates Reverse (-)

12103284 .. 12107785

Gene Structure 4502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1135100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGAAGAAGAAAGCTCGGAACTTGCTCAAAACCATCGCCTCCTTCTTCACCAAGCACCACATAGCCATGGACGATTTACCAGAGCGCTACTCTTACAACCCAACTCTCCGCTGGAACGCCGACCTCGAAAGCTACTTCTCCAAGGCATACGGACCCCACCATTTCTCCTGCATCTCCCAAGCCCTATCGCGGCCGTCTTGCTACTCCTGTATACGCGTGAACACGCTGAAGTCGACGCCGGATGCCGCCATTGAGAAGCTGAGGGCGGTTCTGAAAGAAAAGGGAGCTGACATTTCCAAGTGTGACGTGGAAGGGATGGACTATGTGCTGTTTGTGAGGGGTTCGGGTCCTCACGCCATTGATTATGGCTGTGCTGCAGATGGGAAGCTTCCGAAAGAGGTTCTTGTGAGCCGGAAATGCGCCGAGGCAGTTCTTCGAGGTGCCCAGGTGTATGTTCCTGGTGTATTGGGTTGCACTGCTCATGTCGAGAAAGGGGATGTTGTGGCGGTTTCAGTGGCAGTTGAGCAGCCTGGTGCCGATGGTGGATGGGTCGTTGGGATCACCCGAGGGACTGTGCTGCAAGGTTCAGAGACAGATCCTTATCATATTGAACGAAGGGGGCTGTATATCGGCCAAGGAAGAGCAATGCTGTCAAGGGCCGGGATTTTCCGTGTTATGGAAGGGCTTGCTGTGGATATGAGTGACAGAGTATTTAATCTCCCTTCGTTACATGACGTGCTTGAGGGGGAAATATTTCTTCAAAATCTGCCAAGCATTGTTGCTGCTCACGCACTAGATCCTCAAAAAGGTGAGCGCATATTAGACATGTGTGCTGCACCGGGAGGGAAAACAACTGCAATTGCACTTCTTATGAAGGATGAAGGAGAAATTGTTGCCGCTGATAGATCTCACAATAAGGTGCAGGGTATTCACAAATTGGCTGCTGAAATGGGCCTGAGTTGTATAACCCCATATAAACTAGATGCTCTAAAATCTGTTTGTACAACAAACGAGTCCGATGATTTTTCTAATCACTCTTGCATTAAGGAAAATCATGTTGGAAACGTTCAAGGTTCTGACTTGATAAAGTCAGAATTGGAGAAGTCTAAATTGATTACTTTCGAAAGGTTGAATGCTGAGATGGATTTCAAGAAAAGTGTTAGCAATGAAAAGGTGAATGAGACAACATACACTAGCAAAGCTGCCATCAGGAAGGAAATGCGAATAAAACGGAATGGTCCAGGAAGAAATCAGAGCGTGGGTGGTAGGGTTGAGAAGTCAAAGGGATTTGCTCCCAAGAGCTTTGATCGAGTTCTTCTTGATGCACCCTGCTCTGCCCTTGGTTTAAGACCTCGACTATTTGCTGGAGAGGAAACAATTGAATCCATGAGAAAGCATGCGACATATCAAAGAAGAATGCTTGATCAGGCTGTTCAGTTGGTTCGCCCGGGTGGAGTTCTTGTGTATTCAACATGTACCATAAATCCCGGAGAGAATGAAGCTGTTGTTCGATATGCTTTGGATACATATAAATTCCTCTCCTTGGCACCGCAGCACCCAAGGATTGGAGGACCTGGTCTTGTTGGCCGTTTTGAATTTCCCGATGGATATACTGAGGAGTGGCTGAGACCCGGGGAGGAAGAACTCGTTCAGAGGTTTGATCCATCGTCCTCGCTTGATACAATAGGGTTTTTCATAGCCAAGTTTTCTGTTGGATCAAACAAGGCTGACTTACAAAACTCCGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016427 GO:0016428 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F PUA

Protein Analysis

584

Amino Acids

63.94

Weight (kDa)

8.28

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA	PF01472	133 - 170	4.2e-06	PUA domain
Methyltr_RsmB-F	PF01189	263 - 329	1.9e-15	16S rRNA methyltransferase RsmB/F
Methyltr_RsmB-F	PF01189	431 - 516	3.4e-19	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06560
fragaria_vesca	FvH4_6g38630 FvH4_6g38630
malus_domestica	MD09G1148800.v1.1 MD17G1135100.v1.1
prunus_persica	Prupe.3G177300_v2.0.a1 Prupe.3G177300_v2.0.a1
pyrus_communis	pycom09g06840 pycom17g12920
rosa_chinensis	RchiOBHm_Chr2g0152091
rosa_laevigata	RLG00000020607
rosa_multiflora	Rmu_co8372479.1_g000001 Rmu_sc0000760.1_g000014
rosa_roxburghii	Rroxscaffold_2G00095940
rosa_rugosa	Rorug02G0430900 Rorug02G0431000
rosa_samantha	Rh2DG515100
rosa_wichuraiana	Rw2G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	440, 533, 1546
AccB7I	CCANNNNNTGG	1 cut(s)	1565
AccI	GTMKAC	2 cut(s)	211, 233
AccII	CGCG	2 cut(s)	190, 216
AciI	CCGC	8 cut(s)	109, 190, 246, 266, 506, 897, 1550, 1743
AclI	AACGTT	1 cut(s)	1065
AclWI	GGATC	5 cut(s)	566, 590, 791, 1655, 1723
AcoI	YGGCCR	3 cut(s)	191, 631, 1585
AcsI	RAATTY	2 cut(s)	1532, 1595
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	2 cut(s)	1003, 1477
AfeI	AGCGCT	1 cut(s)	86
AfiI	CCNNNNNNNGG	5 cut(s)	189, 676, 806, 1543, 1565
AflIII	ACRYGT	3 cut(s)	214, 825, 1472
AgsI	TTSAA	8 cut(s)	611, 761, 1070, 1132, 1150, 1382, 1470, 1595
AjiI	CACGTC	2 cut(s)	307, 736
AjnI	CCWGG	5 cut(s)	444, 457, 529, 1240, 1573
AjuI	GAANNNNNNNTTGG	2 cut(s)	1041, 1073
AluBI	AGCT	8 cut(s)	14, 132, 259, 287, 388, 1202, 1302, 1502
AluI	AGCT	8 cut(s)	14, 132, 259, 287, 388, 1202, 1302, 1502
Alw26I	GTCTC	3 cut(s)	584, 1175, 1621
AlwI	GGATC	5 cut(s)	566, 590, 791, 1655, 1723
Ama87I	CYCGRG	3 cut(s)	564, 1447, 1631
Aor51HI	AGCGCT	1 cut(s)	86
AoxI	GGCC	5 cut(s)	191, 631, 657, 952, 1585
ApeKI	GCWGC	8 cut(s)	374, 526, 577, 782, 833, 941, 1202, 1552
ApoI	RAATTY	2 cut(s)	1532, 1595
Asp700I	GAANNNNTTC	2 cut(s)	753, 1647
AspLEI	GCGC	3 cut(s)	87, 422, 816
AspS9I	GGNCC	6 cut(s)	152, 347, 657, 952, 1238, 1571
AsuC2I	CCSGG	7 cut(s)	661, 840, 1448, 1449, 1488, 1632, 1633
AsuHPI	GGTGA	4 cut(s)	40, 553, 821, 1186
AsuII	TTCGAA	1 cut(s)	1122
AvaI	CYCGRG	3 cut(s)	564, 1447, 1631
AvaII	GGWCC	4 cut(s)	152, 347, 1238, 1571
BaeGI	GKGCMC	1 cut(s)	445
BanI	GGYRCC	3 cut(s)	440, 533, 1546
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	8 cut(s)	361, 538, 564, 769, 820, 928, 1189, 1564
BccI	CCATC	9 cut(s)	41, 310, 374, 533, 540, 1135, 1214, 1598, 1672
BceAI	ACGGC	2 cut(s)	178, 1572
BciT130I	CCWGG	5 cut(s)	446, 459, 531, 1242, 1575
BciVI	GTATCC	1 cut(s)	1516
BclI	TGATCA	1 cut(s)	1423
BcnI	CCSGG	7 cut(s)	661, 840, 1448, 1449, 1488, 1632, 1633
BcoDI	GTCTC	3 cut(s)	584, 1175, 1621
BfaI	CTAG	3 cut(s)	794, 980, 1194
BfmI	CTRYAG	1 cut(s)	375
BfoI	RGCGCY	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	1516
BglII	AGATCT	1 cut(s)	905
Bme18I	GGWCC	4 cut(s)	152, 347, 1238, 1571
BmeT110I	CYCGRG	3 cut(s)	564, 1447, 1631
BmgBI	CACGTC	2 cut(s)	307, 736
BmgT120I	GGNCC	6 cut(s)	152, 347, 657, 952, 1238, 1571
BmiI	GGNNCC	5 cut(s)	154, 348, 442, 535, 1548
BmsI	GCATC	4 cut(s)	180, 232, 973, 1312
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
BpmI	CTGGAG	1 cut(s)	1386
Bpu10I	CCTNAGC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	1122
BpuEI	CTTGAG	1 cut(s)	761
BpuMI	CCSGG	7 cut(s)	661, 840, 1448, 1449, 1488, 1632, 1633
BsaBI	GATNNNNATC	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	1621
BsaXI	ACNNNNNCTCC	6 cut(s)	149, 179, 876, 906, 1446, 1476
Bsc4I	CCNNNNNNNGG	5 cut(s)	189, 676, 806, 1543, 1565
Bse3DI	GCAATG	2 cut(s)	651, 1171
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	5 cut(s)	446, 459, 531, 1242, 1575
BseGI	GGATG	5 cut(s)	247, 321, 502, 551, 883
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	5 cut(s)	189, 676, 806, 1543, 1565
BseMI	GCAATG	2 cut(s)	651, 1171
BseMII	CTCAG	5 cut(s)	251, 947, 1128, 1605, 1616
BseRI	GAGGAG	1 cut(s)	1631
BseSI	GKGCMC	1 cut(s)	445
BseX3I	CGGCCG	1 cut(s)	191
BseXI	GCAGC	8 cut(s)	361, 538, 564, 769, 820, 928, 1189, 1564
BsgI	GTGCAG	2 cut(s)	819, 941
Bsh1236I	CGCG	2 cut(s)	190, 216
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	5 cut(s)	193, 633, 659, 954, 1587
BshNI	GGYRCC	3 cut(s)	440, 533, 1546
BsiEI	CGRYCG	1 cut(s)	194
BsiHKCI	CYCGRG	3 cut(s)	564, 1447, 1631
BsiSI	CCGG	7 cut(s)	239, 412, 660, 839, 1448, 1488, 1632
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	5 cut(s)	189, 676, 806, 1543, 1565
BsmAI	GTCTC	3 cut(s)	584, 1175, 1621
BsmFI	GGGAC	1 cut(s)	583
BsmI	GAATGC	2 cut(s)	1138, 1422
BsnI	GGCC	5 cut(s)	193, 633, 659, 954, 1587
Bso31I	GGTCTC	1 cut(s)	1621
BsoBI	CYCGRG	3 cut(s)	564, 1447, 1631
Bsp119I	TTCGAA	1 cut(s)	1122
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	1001
Bsp143I	GATC	8 cut(s)	558, 595, 796, 905, 1306, 1423, 1660, 1715
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	8 cut(s)	109, 190, 246, 266, 506, 897, 1550, 1743
BspANI	GGCC	5 cut(s)	193, 633, 659, 954, 1587
BspCNI	CTCAG	5 cut(s)	252, 948, 1129, 1606, 1617
BspFNI	CGCG	2 cut(s)	190, 216
BspLI	GGNNCC	5 cut(s)	154, 348, 442, 535, 1548
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	5 cut(s)	566, 590, 791, 1655, 1723
BspQI	GCTCTTC	1 cut(s)	634
BspT104I	TTCGAA	1 cut(s)	1122
BspT107I	GGYRCC	3 cut(s)	440, 533, 1546
BspTNI	GGTCTC	1 cut(s)	1621
BsrDI	GCAATG	2 cut(s)	651, 1171
BsrGI	TGTACA	1 cut(s)	1001
BssMI	GATC	8 cut(s)	558, 595, 796, 905, 1306, 1423, 1660, 1715
BssNAI	GTATAC	1 cut(s)	212
BssNI	GRCGYC	1 cut(s)	236
BssT1I	CCWWGG	6 cut(s)	66, 141, 634, 1339, 1542, 1559
Bst1107I	GTATAC	1 cut(s)	212
Bst2UI	CCWGG	5 cut(s)	446, 459, 531, 1242, 1575
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	1 cut(s)	634
BstACI	GRCGYC	1 cut(s)	236
BstAUI	TGTACA	1 cut(s)	1001
BstBI	TTCGAA	1 cut(s)	1122
BstC8I	GCNNGC	2 cut(s)	687, 1398
BstDEI	CTNAG	5 cut(s)	260, 956, 1137, 1614, 1625
BstDSI	CCRYGG	1 cut(s)	66
BstENI	CCTNNNNNAGG	1 cut(s)	804
BstF5I	GGATG	5 cut(s)	247, 321, 502, 551, 883
BstFNI	CGCG	2 cut(s)	190, 216
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	3 cut(s)	87, 422, 816
BstKTI	GATC	8 cut(s)	561, 598, 799, 908, 1309, 1426, 1663, 1718
BstMAI	GTCTC	3 cut(s)	584, 1175, 1621
BstMBI	GATC	8 cut(s)	558, 595, 796, 905, 1306, 1423, 1660, 1715
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	2 cut(s)	417, 788
BstNI	CCWGG	5 cut(s)	446, 459, 531, 1242, 1575
BstNSI	RCATGY	3 cut(s)	829, 1400, 1476
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	445
BstUI	CGCG	2 cut(s)	190, 216
BstV1I	GCAGC	8 cut(s)	361, 538, 564, 769, 820, 928, 1189, 1564
BstX2I	RGATCY	3 cut(s)	595, 796, 905
BstYI	RGATCY	3 cut(s)	595, 796, 905
BstZ17I	GTATAC	1 cut(s)	212
BstZI	CGGCCG	1 cut(s)	191
BsuI	GTATCC	1 cut(s)	1516
BsuRI	GGCC	5 cut(s)	193, 633, 659, 954, 1587
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	19
BtrI	CACGTC	2 cut(s)	307, 736
BtsCI	GGATG	5 cut(s)	247, 321, 502, 551, 883
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	474, 519
Cac8I	GCNNGC	2 cut(s)	687, 1398
CfoI	GCGC	3 cut(s)	87, 422, 816
Cfr13I	GGNCC	6 cut(s)	152, 347, 657, 952, 1238, 1571
Cfr9I	CCCGGG	2 cut(s)	1447, 1631
CseI	GACGC	1 cut(s)	244
CsiI	ACCWGGT	1 cut(s)	1573
Csp6I	GTAC	2 cut(s)	1002, 1476
CviAII	CATG	8 cut(s)	67, 482, 731, 826, 1055, 1387, 1397, 1473
CviQI	GTAC	2 cut(s)	1002, 1476
DdeI	CTNAG	5 cut(s)	260, 956, 1137, 1614, 1625
DpnI	GATC	8 cut(s)	560, 597, 798, 907, 1308, 1425, 1662, 1717
DpnII	GATC	8 cut(s)	558, 595, 796, 905, 1306, 1423, 1660, 1715
EaeI	YGGCCR	3 cut(s)	191, 631, 1585
EagI	CGGCCG	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	634
EarI	CTCTTC	1 cut(s)	634
EclXI	CGGCCG	1 cut(s)	191
Eco130I	CCWWGG	6 cut(s)	66, 141, 634, 1339, 1542, 1559
Eco31I	GGTCTC	1 cut(s)	1621
Eco47I	GGWCC	4 cut(s)	152, 347, 1238, 1571
Eco47III	AGCGCT	1 cut(s)	86
Eco52I	CGGCCG	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	3 cut(s)	564, 1447, 1631
EcoNI	CCTNNNNNAGG	1 cut(s)	804
EcoO109I	RGGNCCY	2 cut(s)	347, 1571
EcoRII	CCWGG	5 cut(s)	444, 457, 529, 1240, 1573
EcoT14I	CCWWGG	6 cut(s)	66, 141, 634, 1339, 1542, 1559
ErhI	CCWWGG	6 cut(s)	66, 141, 634, 1339, 1542, 1559
FaeI	CATG	8 cut(s)	70, 485, 734, 829, 1058, 1390, 1400, 1476
FalI	AAGNNNNNCTT	4 cut(s)	387, 419, 1715, 1747
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	8 cut(s)	66, 481, 730, 825, 1054, 1386, 1396, 1472
FbaI	TGATCA	1 cut(s)	1423
FblI	GTMKAC	2 cut(s)	211, 233
FokI	GGATG	5 cut(s)	254, 328, 509, 558, 890
FspBI	CTAG	3 cut(s)	794, 980, 1194
GlaI	GCGC	3 cut(s)	86, 421, 815
GsuI	CTGGAG	1 cut(s)	1386
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	5 cut(s)	193, 633, 659, 954, 1587
HapII	CCGG	7 cut(s)	239, 412, 660, 839, 1448, 1488, 1632
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	3 cut(s)	87, 422, 816
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	8 cut(s)	70, 485, 734, 829, 1058, 1390, 1400, 1476
Hin6I	GCGC	3 cut(s)	85, 420, 814
HinP1I	GCGC	3 cut(s)	85, 420, 814
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	2 cut(s)	1013, 1382
HpaII	CCGG	7 cut(s)	239, 412, 660, 839, 1448, 1488, 1632
HphI	GGTGA	4 cut(s)	40, 553, 821, 1186
Hpy166II	GTNNAC	3 cut(s)	212, 220, 234
Hpy188I	TCNGA	9 cut(s)	18, 273, 393, 589, 1018, 1078, 1093, 1254, 1653
Hpy188III	TCNNGA	6 cut(s)	487, 1150, 1210, 1319, 1601, 1749
Hpy8I	GTNNAC	3 cut(s)	212, 220, 234
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	8 cut(s)	52, 305, 609, 674, 732, 868, 875, 1207
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	3 cut(s)	306, 735, 1065
HpyF10VI	GCNNNNNNNGC	2 cut(s)	417, 788
HpyF3I	CTNAG	5 cut(s)	260, 956, 1137, 1614, 1625
HpySE526I	ACGT	3 cut(s)	306, 735, 1065
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	8 cut(s)	70, 485, 734, 829, 1058, 1390, 1400, 1476
HspAI	GCGC	3 cut(s)	85, 420, 814
Ksp22I	TGATCA	1 cut(s)	1423
Kzo9I	GATC	8 cut(s)	558, 595, 796, 905, 1306, 1423, 1660, 1715
LguI	GCTCTTC	1 cut(s)	634
LmnI	GCTCC	2 cut(s)	284, 1297
Lsp1109I	GCAGC	8 cut(s)	361, 538, 564, 769, 820, 928, 1189, 1564
LweI	GCATC	4 cut(s)	180, 232, 973, 1312
MabI	ACCWGGT	1 cut(s)	1573
MaeI	CTAG	3 cut(s)	794, 980, 1194
MaeII	ACGT	3 cut(s)	306, 735, 1065
MaeIII	GTNAC	3 cut(s)	302, 701, 726
MalI	GATC	8 cut(s)	560, 597, 798, 907, 1308, 1425, 1662, 1717
MboI	GATC	8 cut(s)	558, 595, 796, 905, 1306, 1423, 1660, 1715
MfeI	CAATTG	2 cut(s)	858, 1377
MflI	RGATCY	3 cut(s)	595, 796, 905
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	8 cut(s)	858, 888, 935, 1094, 1109, 1377, 1532, 1595
MluI	ACGCGT	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	1022
MmeI	TCCRAC	2 cut(s)	1039, 1693
MroXI	GAANNNNTTC	2 cut(s)	753, 1647
MseI	TTAA	3 cut(s)	714, 1044, 1346
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	111, 899
MspI	CCGG	7 cut(s)	239, 412, 660, 839, 1448, 1488, 1632
MunI	CAATTG	2 cut(s)	858, 1377
Mva1269I	GAATGC	2 cut(s)	1138, 1422
MvaI	CCWGG	5 cut(s)	446, 459, 531, 1242, 1575
MvnI	CGCG	2 cut(s)	190, 216
MwoI	GCNNNNNNNGC	2 cut(s)	417, 788
NciI	CCSGG	7 cut(s)	661, 840, 1448, 1449, 1488, 1632, 1633
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	8 cut(s)	558, 595, 796, 905, 1306, 1423, 1660, 1715
NlaIII	CATG	8 cut(s)	70, 485, 734, 829, 1058, 1390, 1400, 1476
NlaIV	GGNNCC	5 cut(s)	154, 348, 442, 535, 1548
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	302, 701
NspI	RCATGY	3 cut(s)	829, 1400, 1476
NspV	TTCGAA	1 cut(s)	1122
PaeI	GCATGC	1 cut(s)	1400
PciI	ACATGT	2 cut(s)	825, 1472
PciSI	GCTCTTC	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 230
PctI	GAATGC	2 cut(s)	1138, 1422
PdmI	GAANNNNTTC	2 cut(s)	753, 1647
PfeI	GAWTC	1 cut(s)	1382
PflFI	GACNNNGTC	1 cut(s)	1575
PflMI	CCANNNNNTGG	1 cut(s)	1565
PfoI	TCCNGGA	2 cut(s)	1240, 1486
PleI	GAGTC	1 cut(s)	1021
PpsI	GAGTC	1 cut(s)	1021
PpuMI	RGGWCCY	2 cut(s)	347, 1571
PscI	ACATGT	2 cut(s)	825, 1472
Psp1406I	AACGTT	1 cut(s)	1065
Psp5II	RGGWCCY	2 cut(s)	347, 1571
Psp6I	CCWGG	5 cut(s)	444, 457, 529, 1240, 1573
PspGI	CCWGG	5 cut(s)	444, 457, 529, 1240, 1573
PspN4I	GGNNCC	5 cut(s)	154, 348, 442, 535, 1548
PspPI	GGNCC	6 cut(s)	152, 347, 657, 952, 1238, 1571
PspPPI	RGGWCCY	2 cut(s)	347, 1571
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	3 cut(s)	595, 796, 905
PsyI	GACNNNGTC	1 cut(s)	1575
RsaI	GTAC	2 cut(s)	1003, 1477
RsaNI	GTAC	2 cut(s)	1002, 1476
RseI	CAYNNNNRTG	1 cut(s)	65
SalI	GTCGAC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	714, 1044, 1346
Sau3AI	GATC	8 cut(s)	558, 595, 796, 905, 1306, 1423, 1660, 1715
Sau96I	GGNCC	6 cut(s)	152, 347, 657, 952, 1238, 1571
SchI	GAGTC	1 cut(s)	1022
SduI	GDGCHC	1 cut(s)	445
SexAI	ACCWGGT	1 cut(s)	1573
SfaNI	GCATC	4 cut(s)	180, 232, 973, 1312
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	1122
SinI	GGWCC	4 cut(s)	152, 347, 1238, 1571
SmaI	CCCGGG	2 cut(s)	1449, 1633
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SphI	GCATGC	1 cut(s)	1400
Sse9I	AATT	8 cut(s)	858, 888, 935, 1094, 1109, 1377, 1532, 1595
SsiI	CCGC	8 cut(s)	109, 190, 246, 266, 506, 897, 1550, 1743
SspI	AATATT	1 cut(s)	753
SspMI	CTAG	3 cut(s)	794, 980, 1194
StyI	CCWWGG	6 cut(s)	66, 141, 634, 1339, 1542, 1559
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	3 cut(s)	309, 738, 1068
TaqI	TCGA	8 cut(s)	126, 233, 436, 486, 1122, 1309, 1354, 1510
TasI	AATT	8 cut(s)	858, 888, 935, 1094, 1109, 1377, 1532, 1595
TatI	WGTACW	1 cut(s)	1001
TauI	GCSGC	3 cut(s)	193, 248, 899
TfiI	GAWTC	1 cut(s)	1382
Tru1I	TTAA	3 cut(s)	714, 1044, 1346
Tru9I	TTAA	3 cut(s)	714, 1044, 1346
TscAI	CASTG	2 cut(s)	481, 519
TseFI	GTSAC	2 cut(s)	302, 701
TseI	GCWGC	8 cut(s)	374, 526, 577, 782, 833, 941, 1202, 1552
Tsp45I	GTSAC	2 cut(s)	302, 701
TspDTI	ATGAA	6 cut(s)	17, 887, 894, 1182, 1512, 1684
TspGWI	ACGGA	3 cut(s)	165, 659, 1246
TspMI	CCCGGG	2 cut(s)	1447, 1631
TspRI	CASTG	2 cut(s)	481, 519
Tth111I	GACNNNGTC	1 cut(s)	1575
Van91I	CCANNNNNTGG	1 cut(s)	1565
VpaK11BI	GGWCC	4 cut(s)	152, 347, 1238, 1571
XagI	CCTNNNNNAGG	1 cut(s)	804
XapI	RAATTY	2 cut(s)	1532, 1595
XceI	RCATGY	3 cut(s)	829, 1400, 1476
XcmI	CCANNNNNNNNNTGG	2 cut(s)	108, 304
XmaI	CCCGGG	2 cut(s)	1447, 1631
XmiI	GTMKAC	2 cut(s)	211, 233
XmnI	GAANNNNTTC	2 cut(s)	753, 1647
XspI	CTAG	3 cut(s)	794, 980, 1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.