Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013335

Physical Location & Seq

Genomic Coordinates Reverse (-)

17248648 .. 17252842

Gene Structure 4195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGGAGATTTCACACCAACAGCAGCAACAGCGTTACAGTTACAACCCAACTCTGCGTTGGAATCTCGAGGTCGAATCCTACTTGTCCAACGCTTATGGACCCGCCCATTTCTCTCGCATCTCCAAAGCCCTAACGCGGCCGTCTTGTTATTCTTGTATAAGAGTGAACACATTGAAGTCGACACCAGACTCCGTTATCGAGAAGTTGAGAGGGATTCTGAAAGGGGTTTCTATTTCCAAGTGTGAAGTTCCAGGTTTGGAGTACTTGGTGTTTGTCAAGGGCTCAGGTCCTCACTCGGTTGATTACGGGTGTGATGAGGATGGGAATGTGAAGCATCCTCCTAAGGAGGTGCTTGTGAGCCGGAAATGTGCCGAGGCGGTTCTTCGTGGCGCCGAGGTGTATGTTCCTGGTGTACTGGCTTGCAGTGCTCATGTTGAGAAGGGGGATGAGGTTGCGGTTTCGGTGTCGGTTGAGCAGCCCGGTGCTGAGGGTGGATGGGTGGTTGGGATCACTAGAGGGACTATTCTGCAAGGTGCTGAGGCAGATCCTTATCATTTTGAACGGAGCGGGCTGTATATTGGCCGAGGTAAAGCAATGATGACAAGGTCTGGGATTTTTCGTGCTCCTGAAGGAATTGCTGTGGATTTCAGTGACAGAGTATATGATCTGCCTTCGTTTCGTGGCGTGCTTGAGGGGGAAATATTTCTTCAAAATCTGCCAAGCATTGTCACTGCTCATGCTCTTGATCCTCAAAAAGGTGATCGCATACTAGACATGTGTGCTGCACCTGGAGGGAAAACAACTGCAATTGCAATTCTTATGAAGGATGAAGGGGAAATTGTTGCCGCTGATAGATCTCACAATAAGGTACTGGATATTCAGAAATTGGCTGCTGAAATGGGCCTTAGTTGTATTACCACTTGCAGACTGGATGCTCTGAAAGCTGTTTGTAGTCGTAATGAATCTGATAATATAACTAATCATTGCTTCACTGAGGATAAATGTGATGTAACAATTCAAGGTTCCAACTTGTTGAAGTCAGAAGTAGAGAAAATTGAAGTGATTGCCACAGAAAGGTTGAATGCCGAAAAGGATTTTAAGAAAAATGTTACCAATGAAAAAGCGAATGAGAGAATTTACATTAGCAGAGCTGACATCAGGAAGGATATGCGAAGGAAACGGAATGGTCCAGGAAGAAATCAGTGTGTGGGTGGTAAGGCTGAGAAGTCAAAAGGCTTTGCCCCCAACAGCTTTGATCGGGTTCTTCTAGATGCTCCCTGCTCTGCTCTTGGTTTAAGACCTCGATTATTTGCTGGAGAGGAAACAGTCGAATCGTTGAGAAAACATGCAACGTATCAAAGGAAAATGTTTGATCAGGCTGTTCAGCTAGTTCGTCCGGGTGGAGTTCTTGTGTATTCAACATGTACAATAAATCCTGGAGAGAATGAAGCTGTGGTTCGATATGCTTTGGATACCTACAAATTCCTATCCTTGGCATCACAGAACCCCAGAATTGGAGGACCTGGTCTAGTTGGCCGTTTTGAATTCCCTGATGGATATACTGAGGAGTGGCTAAGACCTGGTCAGGAAGAACTCGTTCAGAGGTTCGATCCATCGTCTCCGCTCGATACAATCGGGTTTTTCATAGCCAAGTTTATAGTTGGATCAAAAGAGGCTGACTTGGAACAATCTGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016427 GO:0016428 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F PUA

Protein Analysis

566

Amino Acids

62.26

Weight (kDa)

6.59

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA	PF01472	116 - 153	3.8e-06	PUA domain
Methyltr_RsmB-F	PF01189	246 - 315	9.6e-16	16S rRNA methyltransferase RsmB/F
Methyltr_RsmB-F	PF01189	410 - 498	5.3e-19	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06560
fragaria_vesca	FvH4_6g38630 FvH4_6g38630
malus_domestica	MD09G1148800.v1.1 MD17G1135100.v1.1
prunus_persica	Prupe.3G177300_v2.0.a1 Prupe.3G177300_v2.0.a1
pyrus_communis	pycom09g06840 pycom17g12920
rosa_chinensis	RchiOBHm_Chr2g0152091
rosa_laevigata	RLG00000020607
rosa_multiflora	Rmu_co8372479.1_g000001 Rmu_sc0000760.1_g000014
rosa_roxburghii	Rroxscaffold_2G00095940
rosa_rugosa	Rorug02G0430900 Rorug02G0431000
rosa_samantha	Rh2DG515100
rosa_wichuraiana	Rw2G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	389
AccBSI	CCGCTC	2 cut(s)	567, 1624
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	1 cut(s)	136
AciI	CCGC	7 cut(s)	102, 136, 377, 455, 567, 846, 1622
AclWI	GGATC	5 cut(s)	515, 539, 740, 1604, 1672
AcoI	YGGCCR	3 cut(s)	137, 580, 1534
AcsI	RAATTY	3 cut(s)	1134, 1481, 1544
AcuI	CTGAAG	1 cut(s)	648
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	4 cut(s)	263, 414, 870, 1426
AfiI	CCNNNNNNNGG	5 cut(s)	135, 755, 1074, 1492, 1514
AflIII	ACRYGT	2 cut(s)	774, 1421
AgsI	TTSAA	9 cut(s)	175, 560, 710, 1019, 1036, 1058, 1081, 1419, 1544
AjnI	CCWGG	7 cut(s)	250, 406, 787, 1189, 1435, 1522, 1579
AluBI	AGCT	5 cut(s)	944, 1151, 1251, 1387, 1451
AluI	AGCT	5 cut(s)	944, 1151, 1251, 1387, 1451
Alw21I	GWGCWC	2 cut(s)	430, 625
Alw26I	GTCTC	1 cut(s)	1623
AlwI	GGATC	5 cut(s)	515, 539, 740, 1604, 1672
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	4 cut(s)	137, 580, 901, 1534
ApeKI	GCWGC	4 cut(s)	22, 475, 782, 890
ApoI	RAATTY	3 cut(s)	1134, 1481, 1544
Asp700I	GAANNNNTTC	2 cut(s)	702, 1596
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	5 cut(s)	98, 287, 901, 1187, 1520
AsuC2I	CCSGG	2 cut(s)	480, 1398
AsuHPI	GGTGA	1 cut(s)	770
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	4 cut(s)	98, 287, 1187, 1520
AxyI	CCTNAGG	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	284
Bbv12I	GWGCWC	2 cut(s)	430, 625
BbvCI	CCTCAGC	2 cut(s)	486, 537
BbvI	GCAGC	4 cut(s)	34, 487, 769, 877
BccI	CCATC	4 cut(s)	314, 489, 1547, 1621
BceAI	ACGGC	2 cut(s)	124, 1521
BciT130I	CCWGG	7 cut(s)	252, 408, 789, 1191, 1437, 1524, 1581
BciVI	GTATCC	1 cut(s)	1465
BclI	TGATCA	1 cut(s)	1372
BcnI	CCSGG	2 cut(s)	480, 1398
BcoDI	GTCTC	1 cut(s)	1623
BfaI	CTAG	5 cut(s)	513, 770, 1268, 1388, 1529
BfoI	RGCGCY	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	1465
BglII	AGATCT	1 cut(s)	854
BisI	GCNGC	6 cut(s)	23, 137, 476, 783, 846, 891
BlsI	GCNGC	6 cut(s)	24, 138, 477, 784, 847, 892
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	9 cut(s)	252, 408, 480, 789, 1191, 1398, 1437, 1524, 1581
Bme18I	GGWCC	4 cut(s)	98, 287, 1187, 1520
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	5 cut(s)	98, 287, 901, 1187, 1520
BmiI	GGNNCC	3 cut(s)	100, 391, 1024
BmrFI	CCNGG	9 cut(s)	252, 408, 480, 789, 1191, 1398, 1437, 1524, 1581
BmsI	GCATC	5 cut(s)	126, 343, 922, 1261, 1505
BpmI	CTGGAG	3 cut(s)	810, 1335, 1458
Bpu10I	CCTNAGC	3 cut(s)	283, 486, 537
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	2 cut(s)	480, 1398
BsaBI	GATNNNNATC	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	4 cut(s)	372, 393, 583, 1491
BsaXI	ACNNNNNCTCC	2 cut(s)	1395, 1425
Bsc4I	CCNNNNNNNGG	5 cut(s)	135, 755, 1074, 1492, 1514
Bse1I	ACTGG	3 cut(s)	420, 876, 933
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	2 cut(s)	600, 982
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	7 cut(s)	252, 408, 789, 1191, 1437, 1524, 1581
BseDI	CCNNGG	4 cut(s)	372, 393, 583, 1491
BseGI	GGATG	6 cut(s)	325, 334, 451, 500, 832, 937
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	5 cut(s)	135, 755, 1074, 1492, 1514
BseMI	GCAATG	2 cut(s)	600, 982
BseMII	CTCAG	6 cut(s)	297, 477, 528, 984, 1212, 1554
BseNI	ACTGG	3 cut(s)	420, 876, 933
BseRI	GAGGAG	1 cut(s)	1580
BseX3I	CGGCCG	1 cut(s)	137
BseXI	GCAGC	4 cut(s)	34, 487, 769, 877
BsgI	GTGCAG	1 cut(s)	768
Bsh1236I	CGCG	1 cut(s)	136
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	4 cut(s)	139, 582, 903, 1536
BshNI	GGYRCC	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	430, 625
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	361, 480, 1397
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	5 cut(s)	135, 755, 1074, 1492, 1514
BsmAI	GTCTC	1 cut(s)	1623
BsmBI	CGTCTC	1 cut(s)	1623
BsmFI	GGGAC	1 cut(s)	532
BsmI	GAATGC	1 cut(s)	1087
BsnI	GGCC	4 cut(s)	139, 582, 903, 1536
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	3 cut(s)	284, 430, 625
Bsp1407I	TGTACA	1 cut(s)	1424
BspACI	CCGC	7 cut(s)	102, 136, 377, 455, 567, 846, 1622
BspANI	GGCC	4 cut(s)	139, 582, 903, 1536
BspCNI	CTCAG	6 cut(s)	296, 478, 529, 985, 1213, 1555
BspFNI	CGCG	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	100, 391, 1024
BspPI	GGATC	5 cut(s)	515, 539, 740, 1604, 1672
BspT107I	GGYRCC	1 cut(s)	389
BsrBI	CCGCTC	2 cut(s)	567, 1624
BsrDI	GCAATG	2 cut(s)	600, 982
BsrGI	TGTACA	1 cut(s)	1424
BsrI	ACTGG	3 cut(s)	420, 876, 933
BssECI	CCNNGG	4 cut(s)	372, 393, 583, 1491
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	1491
Bst2UI	CCWGG	7 cut(s)	252, 408, 789, 1191, 1437, 1524, 1581
Bst4CI	ACNGT	2 cut(s)	38, 1327
BstACI	GRCGYC	1 cut(s)	390
BstAUI	TGTACA	1 cut(s)	1424
BstC8I	GCNNGC	3 cut(s)	421, 569, 686
BstDEI	CTNAG	9 cut(s)	283, 342, 486, 537, 905, 993, 1221, 1563, 1574
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	6 cut(s)	325, 334, 451, 500, 832, 937
BstFNI	CGCG	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstMAI	GTCTC	1 cut(s)	1623
BstMCI	CGRYCG	1 cut(s)	140
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 425, 941
BstNI	CCWGG	7 cut(s)	252, 408, 789, 1191, 1437, 1524, 1581
BstNSI	RCATGY	3 cut(s)	778, 1349, 1425
BstSCI	CCNGG	9 cut(s)	250, 406, 478, 787, 1189, 1396, 1435, 1522, 1579
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	4 cut(s)	34, 487, 769, 877
BstX2I	RGATCY	2 cut(s)	544, 854
BstYI	RGATCY	2 cut(s)	544, 854
BstZI	CGGCCG	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	1465
BsuRI	GGCC	4 cut(s)	139, 582, 903, 1536
BtsCI	GGATG	6 cut(s)	325, 334, 451, 500, 832, 937
BtsI	GCAGTG	2 cut(s)	430, 729
BtsIMutI	CAGTG	5 cut(s)	430, 655, 729, 990, 1208
Cac8I	GCNNGC	3 cut(s)	421, 569, 686
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	5 cut(s)	98, 287, 901, 1187, 1520
CsiI	ACCWGGT	2 cut(s)	1522, 1579
Csp6I	GTAC	4 cut(s)	262, 413, 869, 1425
CviAII	CATG	5 cut(s)	431, 737, 775, 1346, 1422
CviQI	GTAC	4 cut(s)	262, 413, 869, 1425
DdeI	CTNAG	9 cut(s)	283, 342, 486, 537, 905, 993, 1221, 1563, 1574
DinI	GGCGCC	1 cut(s)	391
EaeI	YGGCCR	3 cut(s)	137, 580, 1534
EagI	CGGCCG	1 cut(s)	137
EclXI	CGGCCG	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	1491
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	4 cut(s)	98, 287, 1187, 1520
Eco52I	CGGCCG	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	648
Eco81I	CCTNAGG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoO109I	RGGNCCY	2 cut(s)	287, 1520
EcoRI	GAATTC	1 cut(s)	1544
EcoRII	CCWGG	7 cut(s)	250, 406, 787, 1189, 1435, 1522, 1579
EcoT14I	CCWWGG	1 cut(s)	1491
EcoT38I	GRGCYC	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	391
EheI	GGCGCC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	1491
Esp3I	CGTCTC	1 cut(s)	1623
FaeI	CATG	5 cut(s)	434, 740, 778, 1349, 1425
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	5 cut(s)	430, 736, 774, 1345, 1421
FauI	CCCGC	2 cut(s)	109, 560
FbaI	TGATCA	1 cut(s)	1372
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	6 cut(s)	23, 137, 476, 783, 846, 891
FokI	GGATG	6 cut(s)	321, 332, 458, 507, 839, 944
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	6 cut(s)	23, 137, 476, 783, 846, 891
FspBI	CTAG	5 cut(s)	513, 770, 1268, 1388, 1529
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	6 cut(s)	23, 137, 476, 783, 846, 891
GsuI	CTGGAG	3 cut(s)	810, 1335, 1458
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	4 cut(s)	139, 582, 903, 1536
HapII	CCGG	3 cut(s)	361, 480, 1397
HhaI	GCGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	5 cut(s)	434, 740, 778, 1349, 1425
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	6 cut(s)	61, 74, 188, 214, 962, 1331
HpaII	CCGG	3 cut(s)	361, 480, 1397
HphI	GGTGA	1 cut(s)	770
Hpy166II	GTNNAC	3 cut(s)	166, 180, 413
Hpy188I	TCNGA	6 cut(s)	219, 882, 939, 967, 1042, 1602
Hpy188III	TCNNGA	7 cut(s)	65, 199, 626, 743, 1159, 1268, 1586
Hpy8I	GTNNAC	3 cut(s)	166, 180, 413
HpyAV	CCTTC	7 cut(s)	433, 623, 681, 817, 824, 1156, 1167
HpyCH4III	ACNGT	2 cut(s)	38, 1327
HpyCH4IV	ACGT	1 cut(s)	1352
HpyCH4V	TGCA	8 cut(s)	423, 529, 785, 806, 812, 924, 1349, 1694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 425, 941
HpyF3I	CTNAG	9 cut(s)	283, 342, 486, 537, 905, 993, 1221, 1563, 1574
HpySE526I	ACGT	1 cut(s)	1352
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	5 cut(s)	434, 740, 778, 1349, 1425
HspAI	GCGC	1 cut(s)	390
KasI	GGCGCC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	1372
LmnI	GCTCC	3 cut(s)	564, 628, 1279
Lsp1109I	GCAGC	4 cut(s)	34, 487, 769, 877
LweI	GCATC	5 cut(s)	126, 343, 922, 1261, 1505
MabI	ACCWGGT	2 cut(s)	1522, 1579
MaeI	CTAG	5 cut(s)	513, 770, 1268, 1388, 1529
MaeII	ACGT	1 cut(s)	1352
MaeIII	GTNAC	6 cut(s)	32, 38, 650, 727, 1009, 1108
MbiI	CCGCTC	2 cut(s)	567, 1624
MboII	GAAGA	5 cut(s)	374, 698, 1206, 1256, 1601
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	2 cut(s)	544, 854
MhlI	GDGCHC	3 cut(s)	284, 430, 625
Mly113I	GGCGCC	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	4 cut(s)	38, 111, 1050, 1642
MroXI	GAANNNNTTC	2 cut(s)	702, 1596
MseI	TTAA	2 cut(s)	1098, 1295
MspA1I	CMGCKG	1 cut(s)	848
MspI	CCGG	3 cut(s)	361, 480, 1397
MspR9I	CCNGG	9 cut(s)	252, 408, 480, 789, 1191, 1398, 1437, 1524, 1581
MunI	CAATTG	1 cut(s)	807
Mva1269I	GAATGC	1 cut(s)	1087
MvaI	CCWGG	7 cut(s)	252, 408, 789, 1191, 1437, 1524, 1581
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	3 cut(s)	28, 425, 941
NarI	GGCGCC	1 cut(s)	390
NciI	CCSGG	2 cut(s)	480, 1398
NlaIII	CATG	5 cut(s)	434, 740, 778, 1349, 1425
NlaIV	GGNNCC	3 cut(s)	100, 391, 1024
NmeAIII	GCCGAG	3 cut(s)	397, 418, 608
NmuCI	GTSAC	2 cut(s)	650, 727
NspI	RCATGY	3 cut(s)	778, 1349, 1425
PaeR7I	CTCGAG	1 cut(s)	65
PciI	ACATGT	2 cut(s)	774, 1421
PctI	GAATGC	1 cut(s)	1087
PdmI	GAANNNNTTC	2 cut(s)	702, 1596
PfeI	GAWTC	5 cut(s)	61, 74, 214, 962, 1331
PflFI	GACNNNGTC	3 cut(s)	604, 1524, 1581
PfoI	TCCNGGA	2 cut(s)	1189, 1435
PkrI	GCNGC	6 cut(s)	24, 138, 477, 784, 847, 892
PleI	GAGTC	1 cut(s)	182
PluTI	GGCGCC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	182
PpuMI	RGGWCCY	2 cut(s)	287, 1520
PscI	ACATGT	2 cut(s)	774, 1421
Psp5II	RGGWCCY	2 cut(s)	287, 1520
Psp6I	CCWGG	7 cut(s)	250, 406, 787, 1189, 1435, 1522, 1579
PspGI	CCWGG	7 cut(s)	250, 406, 787, 1189, 1435, 1522, 1579
PspN4I	GGNNCC	3 cut(s)	100, 391, 1024
PspPI	GGNCC	5 cut(s)	98, 287, 901, 1187, 1520
PspPPI	RGGWCCY	2 cut(s)	287, 1520
PsuI	RGATCY	2 cut(s)	544, 854
PsyI	GACNNNGTC	3 cut(s)	604, 1524, 1581
RsaI	GTAC	4 cut(s)	263, 414, 870, 1426
RsaNI	GTAC	4 cut(s)	262, 413, 869, 1425
SalI	GTCGAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	1098, 1295
SatI	GCNGC	6 cut(s)	23, 137, 476, 783, 846, 891
Sau96I	GGNCC	5 cut(s)	98, 287, 901, 1187, 1520
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	9 cut(s)	252, 408, 480, 789, 1191, 1398, 1437, 1524, 1581
SduI	GDGCHC	3 cut(s)	284, 430, 625
SexAI	ACCWGGT	2 cut(s)	1522, 1579
SfaNI	GCATC	5 cut(s)	126, 343, 922, 1261, 1505
SfoI	GGCGCC	1 cut(s)	391
Sfr274I	CTCGAG	1 cut(s)	65
SinI	GGWCC	4 cut(s)	98, 287, 1187, 1520
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	65, 689
SmoI	CTYRAG	2 cut(s)	65, 689
SsiI	CCGC	7 cut(s)	102, 136, 377, 455, 567, 846, 1622
SspDI	GGCGCC	1 cut(s)	389
SspI	AATATT	1 cut(s)	702
SspMI	CTAG	5 cut(s)	513, 770, 1268, 1388, 1529
StyD4I	CCNGG	9 cut(s)	250, 406, 478, 787, 1189, 1396, 1435, 1522, 1579
StyI	CCWWGG	1 cut(s)	1491
TaaI	ACNGT	2 cut(s)	38, 1327
TaiI	ACGT	1 cut(s)	1355
TaqI	TCGA	9 cut(s)	66, 72, 179, 198, 1303, 1329, 1459, 1608, 1626
TatI	WGTACW	3 cut(s)	261, 412, 1424
TauI	GCSGC	2 cut(s)	139, 848
TfiI	GAWTC	5 cut(s)	61, 74, 214, 962, 1331
Tru1I	TTAA	2 cut(s)	1098, 1295
Tru9I	TTAA	2 cut(s)	1098, 1295
TscAI	CASTG	5 cut(s)	430, 655, 736, 997, 1208
TseFI	GTSAC	2 cut(s)	650, 727
TseI	GCWGC	4 cut(s)	22, 475, 782, 890
Tsp45I	GTSAC	2 cut(s)	650, 727
TspDTI	ATGAA	6 cut(s)	836, 843, 975, 1131, 1461, 1633
TspGWI	ACGGA	3 cut(s)	181, 577, 1195
TspRI	CASTG	5 cut(s)	430, 655, 736, 997, 1208
Tth111I	GACNNNGTC	3 cut(s)	604, 1524, 1581
VpaK11BI	GGWCC	4 cut(s)	98, 287, 1187, 1520
XagI	CCTNNNNNAGG	1 cut(s)	753
XapI	RAATTY	3 cut(s)	1134, 1481, 1544
XbaI	TCTAGA	1 cut(s)	1267
XceI	RCATGY	3 cut(s)	778, 1349, 1425
XcmI	CCANNNNNNNNNTGG	2 cut(s)	54, 925
XhoI	CTCGAG	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	179
XmnI	GAANNNNTTC	2 cut(s)	702, 1596
XspI	CTAG	5 cut(s)	513, 770, 1268, 1388, 1529
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.