Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013335

Physical Location & Seq

Genomic Coordinates Forward (+)

65909557 .. 65913559

Gene Structure 4003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G040410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGAAGAAGAAAGCGAGGGGCTTTTTCAGAAGAAGCATCAGCACCTTCTTCACCCGCCCCAAAATAACAATGGAGACTTCACACCAACAGCAACAGCGTTACAGTTACAACCCAACTCTGCGTTGGAATCCCGAGGTCGAATCCTACTTGTCCAACGCTTATGGACCCGCCCATTTCTCTCGCATGTCCAAAGCCCTAACGCGGCCGTCTTGTTATTCTTGTATAAGAGTGAACACATTGAAGTCCACACCAGACTCTGTCATTGAAAAGTTGAGAGGGATTCTGAAAGGGGTTTCAATTTGCAAATGTGAAGTTCCAGGTTTGGAGTACTTGGTGTTTGTGAAGGGCTCAGGTCCTCACTCAGTTGATTACGGGTGTGATGAGGATGGGAATGTGAAGCATCCTCCTAAGGAGGTGCTTGTGAGCCGGAAATGTGCCGAGGCGGTTCTTCGTGGCGCCGAGGTGTATGTTCCTGGTGTACTGGCTTGCAGTGCTCATGTTGAGAAGGGGGATGAGGTTGCGGTTTCGGTGTCGGTTGAGCAGCCCGGTGCTGAGGGTGGATGGGTGGTTGGGATCACTAGAGGGACTATTCTGCAAGGTGCTGAGACAGATCCTTATCATTTTGAAAGGAGCGGGCTGTATATTGGCCGAGGTAAAGCAATGATGTCAAGGTCTGGGATTTTTCGTGCTCCTGAAGGAATTGCTGTGGATTTCAGTGACAGAGTATATGATCTGCCTTCGTTTCGTGGCGTGCTTGAGGGGGAAATATTTCTTCAAAATCTGCCAAGCATTGTCACTGCTCATGCTCTAGATCCTCAAAAAGGTGAGCGCATACTAGACATGTGTGCTGCACCTGGAGGGAAAACAACTGCAATTGCAATTCTTATGAAGGATGAAGGGGAAATTGTTGCCGCTGATAGATCTCACAATAAGGTACTGGATATTCAGAAATTGGCTGCTGAAATGGGCCTTAGTTGTATTACCACTTGCAGACTTGATGCTCTGAAAGCTGTTTGTAGTCGTAATGAATCTGATAATATAACTAATCATTGCTGCACTGAGGATAGCTGTGATGTAACAATTCAAGGTTCCAACTTGTTGAAGTCAGAAGTAGAGAAAATTGAAGTGATTGCCACAGAAAGGTTGAATGCTGAAAAGGATTTTAAGAAAAATGTTACCAATGAAAAAGCGAATGAGAGAATTTACATTAGCAGAGCTGACATCAGGAAGGATATGCGAAGGAAACGGAATGGTCCAGGAAGAAATCAGTCTGTGGGTGGTAAGGCTGAGAAGTCAAAAGGCTTTGCTCCCAACAGCTTTGATCGGGTTCTTCTAGATGCTCCCTGCTCTGCTCTTGGTTTAAGACCTCGACTATTTGCTGGAGAGGAAACAGTCGAATCCTTGAGAAAACATGCAAAGTATCAAAGGAAAATGTTTGATCAGGCTGTTCAGCTAGTTCGTCCGGGTGGAGTTCTTGTGTATTCAACATGTACAATAAATCCTGGAGAGAATGAAGCTGTGGTTCGATATGCTTTGGATACCTACAAATTCCTATCCTTGGCATCACAGAACCCCAGAATTGGAGGACCTGGTCTAGTTGGCCGTTTTGAATTCCCTGATGGATATACTGAGGAGTGGCTAAGACCTGGTCAGGAAGAACTCGTTCAGAGGTTCGATCCATCGTCTCCGCTCGATACAATCGGGTTTTTCATAGCCAAGTTTATAGTTGGATCAAAAGAGGCTGACTTGGAACAATCTGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016427 GO:0016428 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F PUA

Protein Analysis

588

Amino Acids

64.88

Weight (kDa)

8.45

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA	PF01472	138 - 175	3.9e-06	PUA domain
Methyltr_RsmB-F	PF01189	268 - 337	8e-16	16S rRNA methyltransferase RsmB/F
Methyltr_RsmB-F	PF01189	436 - 520	3.7e-19	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06560
fragaria_vesca	FvH4_6g38630 FvH4_6g38630
malus_domestica	MD09G1148800.v1.1 MD17G1135100.v1.1
prunus_persica	Prupe.3G177300_v2.0.a1 Prupe.3G177300_v2.0.a1
pyrus_communis	pycom09g06840 pycom17g12920
rosa_chinensis	RchiOBHm_Chr2g0152091
rosa_laevigata	RLG00000020607
rosa_multiflora	Rmu_co8372479.1_g000001 Rmu_sc0000760.1_g000014
rosa_roxburghii	Rroxscaffold_2G00095940
rosa_rugosa	Rorug02G0430900 Rorug02G0431000
rosa_samantha	Rh2DG515100
rosa_wichuraiana	Rw2G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	455
AccBSI	CCGCTC	2 cut(s)	633, 1690
AccII	CGCG	1 cut(s)	202
AciI	CCGC	8 cut(s)	55, 168, 202, 443, 521, 633, 912, 1688
AclWI	GGATC	5 cut(s)	581, 605, 806, 1670, 1738
AcoI	YGGCCR	3 cut(s)	203, 646, 1600
AcsI	RAATTY	3 cut(s)	1200, 1547, 1610
AcuI	CTGAAG	1 cut(s)	714
AcyI	GRCGYC	1 cut(s)	456
AfaI	GTAC	4 cut(s)	329, 480, 936, 1492
AfiI	CCNNNNNNNGG	5 cut(s)	201, 821, 1140, 1558, 1580
AflIII	ACRYGT	2 cut(s)	840, 1487
AjnI	CCWGG	7 cut(s)	316, 472, 853, 1255, 1501, 1588, 1645
AluBI	AGCT	6 cut(s)	1010, 1068, 1217, 1317, 1453, 1517
AluI	AGCT	6 cut(s)	1010, 1068, 1217, 1317, 1453, 1517
Alw21I	GWGCWC	2 cut(s)	496, 691
Alw26I	GTCTC	3 cut(s)	68, 599, 1689
AlwI	GGATC	5 cut(s)	581, 605, 806, 1670, 1738
AlwNI	CAGNNNCTG	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	4 cut(s)	203, 646, 967, 1600
ApeKI	GCWGC	4 cut(s)	541, 848, 956, 1053
ApoI	RAATTY	3 cut(s)	1200, 1547, 1610
Asp700I	GAANNNNTTC	2 cut(s)	768, 1662
AspLEI	GCGC	2 cut(s)	458, 831
AspS9I	GGNCC	5 cut(s)	164, 353, 967, 1253, 1586
AsuC2I	CCSGG	2 cut(s)	546, 1464
AsuHPI	GGTGA	2 cut(s)	43, 836
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	4 cut(s)	164, 353, 1253, 1586
AxyI	CCTNAGG	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	496, 691
BbvCI	CCTCAGC	1 cut(s)	552
BbvI	GCAGC	4 cut(s)	553, 835, 943, 1040
BccI	CCATC	4 cut(s)	380, 555, 1613, 1687
BceAI	ACGGC	2 cut(s)	190, 1587
BciT130I	CCWGG	7 cut(s)	318, 474, 855, 1257, 1503, 1590, 1647
BciVI	GTATCC	1 cut(s)	1531
BclI	TGATCA	1 cut(s)	1438
BcnI	CCSGG	2 cut(s)	546, 1464
BcoDI	GTCTC	3 cut(s)	68, 599, 1689
BfaI	CTAG	6 cut(s)	579, 809, 836, 1334, 1454, 1595
BfoI	RGCGCY	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	1531
BglII	AGATCT	1 cut(s)	920
BisI	GCNGC	6 cut(s)	203, 542, 849, 912, 957, 1054
BlsI	GCNGC	6 cut(s)	204, 543, 850, 913, 958, 1055
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	9 cut(s)	318, 474, 546, 855, 1257, 1464, 1503, 1590, 1647
Bme18I	GGWCC	4 cut(s)	164, 353, 1253, 1586
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	5 cut(s)	164, 353, 967, 1253, 1586
BmiI	GGNNCC	3 cut(s)	166, 457, 1090
BmrFI	CCNGG	9 cut(s)	318, 474, 546, 855, 1257, 1464, 1503, 1590, 1647
BmsI	GCATC	5 cut(s)	45, 409, 988, 1327, 1571
BpmI	CTGGAG	3 cut(s)	876, 1401, 1524
Bpu10I	CCTNAGC	2 cut(s)	349, 552
BpuEI	CTTGAG	2 cut(s)	776, 1423
BpuMI	CCSGG	2 cut(s)	546, 1464
BsaBI	GATNNNNATC	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	456
BsaJI	CCNNGG	5 cut(s)	132, 438, 459, 649, 1557
BsaXI	ACNNNNNCTCC	2 cut(s)	1461, 1491
Bsc4I	CCNNNNNNNGG	5 cut(s)	201, 821, 1140, 1558, 1580
Bse1I	ACTGG	2 cut(s)	486, 942
Bse21I	CCTNAGG	1 cut(s)	408
Bse3DI	GCAATG	2 cut(s)	666, 1048
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	7 cut(s)	318, 474, 855, 1257, 1503, 1590, 1647
BseDI	CCNNGG	5 cut(s)	132, 438, 459, 649, 1557
BseGI	GGATG	5 cut(s)	391, 400, 517, 566, 898
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	5 cut(s)	201, 821, 1140, 1558, 1580
BseMI	GCAATG	2 cut(s)	666, 1048
BseMII	CTCAG	7 cut(s)	363, 375, 543, 594, 1050, 1278, 1620
BseNI	ACTGG	2 cut(s)	486, 942
BseRI	GAGGAG	1 cut(s)	1646
BseX3I	CGGCCG	1 cut(s)	203
BseXI	GCAGC	4 cut(s)	553, 835, 943, 1040
BsgI	GTGCAG	2 cut(s)	834, 1039
Bsh1236I	CGCG	1 cut(s)	202
Bsh1285I	CGRYCG	1 cut(s)	206
BshFI	GGCC	4 cut(s)	205, 648, 969, 1602
BshNI	GGYRCC	1 cut(s)	455
BsiEI	CGRYCG	1 cut(s)	206
BsiHKAI	GWGCWC	2 cut(s)	496, 691
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	3 cut(s)	427, 546, 1463
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	5 cut(s)	201, 821, 1140, 1558, 1580
BsmAI	GTCTC	3 cut(s)	68, 599, 1689
BsmBI	CGTCTC	1 cut(s)	1689
BsmFI	GGGAC	1 cut(s)	598
BsmI	GAATGC	1 cut(s)	1153
BsnI	GGCC	4 cut(s)	205, 648, 969, 1602
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	3 cut(s)	350, 496, 691
Bsp1407I	TGTACA	1 cut(s)	1490
Bsp143I	GATC	9 cut(s)	573, 610, 730, 811, 920, 1321, 1438, 1675, 1730
BspACI	CCGC	8 cut(s)	55, 168, 202, 443, 521, 633, 912, 1688
BspANI	GGCC	4 cut(s)	205, 648, 969, 1602
BspCNI	CTCAG	7 cut(s)	362, 374, 544, 595, 1051, 1279, 1621
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	166, 457, 1090
BspPI	GGATC	5 cut(s)	581, 605, 806, 1670, 1738
BspT107I	GGYRCC	1 cut(s)	455
BsrBI	CCGCTC	2 cut(s)	633, 1690
BsrDI	GCAATG	2 cut(s)	666, 1048
BsrGI	TGTACA	1 cut(s)	1490
BsrI	ACTGG	2 cut(s)	486, 942
BssECI	CCNNGG	5 cut(s)	132, 438, 459, 649, 1557
BssMI	GATC	9 cut(s)	573, 610, 730, 811, 920, 1321, 1438, 1675, 1730
BssNI	GRCGYC	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	1557
Bst2UI	CCWGG	7 cut(s)	318, 474, 855, 1257, 1503, 1590, 1647
Bst4CI	ACNGT	2 cut(s)	104, 1393
BstACI	GRCGYC	1 cut(s)	456
BstAUI	TGTACA	1 cut(s)	1490
BstC8I	GCNNGC	3 cut(s)	487, 635, 752
BstENI	CCTNNNNNAGG	1 cut(s)	819
BstF5I	GGATG	5 cut(s)	391, 400, 517, 566, 898
BstFNI	CGCG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	2 cut(s)	458, 831
BstKTI	GATC	9 cut(s)	576, 613, 733, 814, 923, 1324, 1441, 1678, 1733
BstMAI	GTCTC	3 cut(s)	68, 599, 1689
BstMBI	GATC	9 cut(s)	573, 610, 730, 811, 920, 1321, 1438, 1675, 1730
BstMCI	CGRYCG	1 cut(s)	206
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 1007
BstNI	CCWGG	7 cut(s)	318, 474, 855, 1257, 1503, 1590, 1647
BstNSI	RCATGY	4 cut(s)	187, 844, 1415, 1491
BstSCI	CCNGG	9 cut(s)	316, 472, 544, 853, 1255, 1462, 1501, 1588, 1645
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	4 cut(s)	553, 835, 943, 1040
BstX2I	RGATCY	3 cut(s)	610, 811, 920
BstYI	RGATCY	3 cut(s)	610, 811, 920
BstZI	CGGCCG	1 cut(s)	203
Bsu36I	CCTNAGG	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	1531
BsuRI	GGCC	4 cut(s)	205, 648, 969, 1602
BtsCI	GGATG	5 cut(s)	391, 400, 517, 566, 898
BtsI	GCAGTG	2 cut(s)	496, 795
BtsIMutI	CAGTG	4 cut(s)	496, 721, 795, 1056
Cac8I	GCNNGC	3 cut(s)	487, 635, 752
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	2 cut(s)	458, 831
Cfr13I	GGNCC	5 cut(s)	164, 353, 967, 1253, 1586
CsiI	ACCWGGT	2 cut(s)	1588, 1645
Csp6I	GTAC	4 cut(s)	328, 479, 935, 1491
CviAII	CATG	6 cut(s)	184, 497, 803, 841, 1412, 1488
CviQI	GTAC	4 cut(s)	328, 479, 935, 1491
DinI	GGCGCC	1 cut(s)	457
DpnI	GATC	9 cut(s)	575, 612, 732, 813, 922, 1323, 1440, 1677, 1732
DpnII	GATC	9 cut(s)	573, 610, 730, 811, 920, 1321, 1438, 1675, 1730
EaeI	YGGCCR	3 cut(s)	203, 646, 1600
EagI	CGGCCG	1 cut(s)	203
EclXI	CGGCCG	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	1557
Eco24I	GRGCYC	1 cut(s)	350
Eco47I	GGWCC	4 cut(s)	164, 353, 1253, 1586
Eco52I	CGGCCG	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	714
Eco81I	CCTNAGG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	819
EcoO109I	RGGNCCY	2 cut(s)	353, 1586
EcoRI	GAATTC	1 cut(s)	1610
EcoRII	CCWGG	7 cut(s)	316, 472, 853, 1255, 1501, 1588, 1645
EcoT14I	CCWWGG	1 cut(s)	1557
EcoT38I	GRGCYC	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	457
EheI	GGCGCC	1 cut(s)	457
ErhI	CCWWGG	1 cut(s)	1557
Esp3I	CGTCTC	1 cut(s)	1689
FaeI	CATG	6 cut(s)	187, 500, 806, 844, 1415, 1491
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	6 cut(s)	183, 496, 802, 840, 1411, 1487
FauI	CCCGC	3 cut(s)	62, 175, 626
FbaI	TGATCA	1 cut(s)	1438
Fnu4HI	GCNGC	6 cut(s)	203, 542, 849, 912, 957, 1054
FokI	GGATG	5 cut(s)	387, 398, 524, 573, 905
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	6 cut(s)	203, 542, 849, 912, 957, 1054
FspBI	CTAG	6 cut(s)	579, 809, 836, 1334, 1454, 1595
GlaI	GCGC	2 cut(s)	457, 830
GluI	GCNGC	6 cut(s)	203, 542, 849, 912, 957, 1054
GsuI	CTGGAG	3 cut(s)	876, 1401, 1524
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	4 cut(s)	205, 648, 969, 1602
HapII	CCGG	3 cut(s)	427, 546, 1463
HhaI	GCGC	2 cut(s)	458, 831
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	6 cut(s)	187, 500, 806, 844, 1415, 1491
Hin6I	GCGC	2 cut(s)	456, 829
HinP1I	GCGC	2 cut(s)	456, 829
HinfI	GANTC	6 cut(s)	127, 140, 254, 280, 1028, 1397
HpaII	CCGG	3 cut(s)	427, 546, 1463
HphI	GGTGA	2 cut(s)	43, 836
Hpy166II	GTNNAC	3 cut(s)	232, 246, 479
Hpy188I	TCNGA	7 cut(s)	29, 285, 948, 1005, 1033, 1108, 1668
Hpy188III	TCNNGA	6 cut(s)	131, 692, 809, 1225, 1334, 1652
Hpy8I	GTNNAC	3 cut(s)	232, 246, 479
HpyAV	CCTTC	9 cut(s)	55, 337, 499, 689, 747, 883, 890, 1222, 1233
HpyCH4III	ACNGT	2 cut(s)	104, 1393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 1007
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	6 cut(s)	187, 500, 806, 844, 1415, 1491
HspAI	GCGC	2 cut(s)	456, 829
KasI	GGCGCC	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	1438
Kzo9I	GATC	9 cut(s)	573, 610, 730, 811, 920, 1321, 1438, 1675, 1730
LmnI	GCTCC	4 cut(s)	630, 694, 1312, 1345
Lsp1109I	GCAGC	4 cut(s)	553, 835, 943, 1040
LweI	GCATC	5 cut(s)	45, 409, 988, 1327, 1571
MabI	ACCWGGT	2 cut(s)	1588, 1645
MaeI	CTAG	6 cut(s)	579, 809, 836, 1334, 1454, 1595
MaeIII	GTNAC	6 cut(s)	98, 104, 716, 793, 1075, 1174
MalI	GATC	9 cut(s)	575, 612, 732, 813, 922, 1323, 1440, 1677, 1732
MbiI	CCGCTC	2 cut(s)	633, 1690
MboI	GATC	9 cut(s)	573, 610, 730, 811, 920, 1321, 1438, 1675, 1730
MboII	GAAGA	9 cut(s)	16, 19, 40, 42, 440, 764, 1272, 1322, 1667
MfeI	CAATTG	1 cut(s)	873
MflI	RGATCY	3 cut(s)	610, 811, 920
MhlI	GDGCHC	3 cut(s)	350, 496, 691
Mly113I	GGCGCC	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	4 cut(s)	104, 177, 1116, 1708
MroXI	GAANNNNTTC	2 cut(s)	768, 1662
MseI	TTAA	2 cut(s)	1164, 1361
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	3 cut(s)	427, 546, 1463
MspR9I	CCNGG	9 cut(s)	318, 474, 546, 855, 1257, 1464, 1503, 1590, 1647
MunI	CAATTG	1 cut(s)	873
Mva1269I	GAATGC	1 cut(s)	1153
MvaI	CCWGG	7 cut(s)	318, 474, 855, 1257, 1503, 1590, 1647
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	491, 1007
NarI	GGCGCC	1 cut(s)	456
NciI	CCSGG	2 cut(s)	546, 1464
NdeII	GATC	9 cut(s)	573, 610, 730, 811, 920, 1321, 1438, 1675, 1730
NlaIII	CATG	6 cut(s)	187, 500, 806, 844, 1415, 1491
NlaIV	GGNNCC	3 cut(s)	166, 457, 1090
NmeAIII	GCCGAG	3 cut(s)	463, 484, 674
NmuCI	GTSAC	2 cut(s)	716, 793
NspI	RCATGY	4 cut(s)	187, 844, 1415, 1491
PciI	ACATGT	2 cut(s)	840, 1487
PctI	GAATGC	1 cut(s)	1153
PdmI	GAANNNNTTC	2 cut(s)	768, 1662
PfeI	GAWTC	5 cut(s)	127, 140, 280, 1028, 1397
PflFI	GACNNNGTC	3 cut(s)	257, 1590, 1647
PfoI	TCCNGGA	2 cut(s)	1255, 1501
PkrI	GCNGC	6 cut(s)	204, 543, 850, 913, 958, 1055
PleI	GAGTC	1 cut(s)	248
PluTI	GGCGCC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	248
PpuMI	RGGWCCY	2 cut(s)	353, 1586
PscI	ACATGT	2 cut(s)	840, 1487
Psp5II	RGGWCCY	2 cut(s)	353, 1586
Psp6I	CCWGG	7 cut(s)	316, 472, 853, 1255, 1501, 1588, 1645
PspGI	CCWGG	7 cut(s)	316, 472, 853, 1255, 1501, 1588, 1645
PspN4I	GGNNCC	3 cut(s)	166, 457, 1090
PspPI	GGNCC	5 cut(s)	164, 353, 967, 1253, 1586
PspPPI	RGGWCCY	2 cut(s)	353, 1586
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	3 cut(s)	610, 811, 920
PsyI	GACNNNGTC	3 cut(s)	257, 1590, 1647
RsaI	GTAC	4 cut(s)	329, 480, 936, 1492
RsaNI	GTAC	4 cut(s)	328, 479, 935, 1491
SaqAI	TTAA	2 cut(s)	1164, 1361
SatI	GCNGC	6 cut(s)	203, 542, 849, 912, 957, 1054
Sau3AI	GATC	9 cut(s)	573, 610, 730, 811, 920, 1321, 1438, 1675, 1730
Sau96I	GGNCC	5 cut(s)	164, 353, 967, 1253, 1586
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	9 cut(s)	318, 474, 546, 855, 1257, 1464, 1503, 1590, 1647
SduI	GDGCHC	3 cut(s)	350, 496, 691
SexAI	ACCWGGT	2 cut(s)	1588, 1645
SfaNI	GCATC	5 cut(s)	45, 409, 988, 1327, 1571
SfoI	GGCGCC	1 cut(s)	457
SinI	GGWCC	4 cut(s)	164, 353, 1253, 1586
SmlI	CTYRAG	2 cut(s)	755, 1402
SmoI	CTYRAG	2 cut(s)	755, 1402
SsiI	CCGC	8 cut(s)	55, 168, 202, 443, 521, 633, 912, 1688
SspDI	GGCGCC	1 cut(s)	455
SspI	AATATT	1 cut(s)	768
SspMI	CTAG	6 cut(s)	579, 809, 836, 1334, 1454, 1595
StyD4I	CCNGG	9 cut(s)	316, 472, 544, 853, 1255, 1462, 1501, 1588, 1645
StyI	CCWWGG	1 cut(s)	1557
TaaI	ACNGT	2 cut(s)	104, 1393
TaqI	TCGA	6 cut(s)	138, 1369, 1395, 1525, 1674, 1692
TatI	WGTACW	3 cut(s)	327, 478, 1490
TauI	GCSGC	2 cut(s)	205, 914
TfiI	GAWTC	5 cut(s)	127, 140, 280, 1028, 1397
Tru1I	TTAA	2 cut(s)	1164, 1361
Tru9I	TTAA	2 cut(s)	1164, 1361
TscAI	CASTG	4 cut(s)	496, 721, 802, 1063
TseFI	GTSAC	2 cut(s)	716, 793
TseI	GCWGC	4 cut(s)	541, 848, 956, 1053
Tsp45I	GTSAC	2 cut(s)	716, 793
TspDTI	ATGAA	7 cut(s)	17, 902, 909, 1041, 1197, 1527, 1699
TspGWI	ACGGA	1 cut(s)	1261
TspRI	CASTG	4 cut(s)	496, 721, 802, 1063
Tth111I	GACNNNGTC	3 cut(s)	257, 1590, 1647
VpaK11BI	GGWCC	4 cut(s)	164, 353, 1253, 1586
XagI	CCTNNNNNAGG	1 cut(s)	819
XapI	RAATTY	3 cut(s)	1200, 1547, 1610
XbaI	TCTAGA	2 cut(s)	808, 1333
XceI	RCATGY	4 cut(s)	187, 844, 1415, 1491
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 120
XmnI	GAANNNNTTC	2 cut(s)	768, 1662
XspI	CTAG	6 cut(s)	579, 809, 836, 1334, 1454, 1595
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.