Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013335

Physical Location & Seq

Genomic Coordinates Forward (+)

73908677 .. 73912656

Gene Structure 3980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG515100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

ATGAAGAAGAAAGCGAGGGACTTTTTCAGAAGAAGCATCAGCACCTTCTTCACCCGCCCCAAAATAACAATGGAGACTTCACACCAACAGCGTTACAGTTACAACCCAACTCTGCGTTGGAATCCCGAGGTCGAATCCTACTTGTCCAACGCTTATGGACCCGCCCATTTCTCTCGCATCTCCAAGGCCTTAACGTACTTCTCCACTCTCTCTGTCACTCTTATTTCCATTCTGGGTCTTCAGTTTTCTGACTGGTCTTTTGGTTTGGTTAGGCGGCCGTCTTGTTATTCTTGTATAAGAGTGAACACATTGAAGTCGACACCAGACTTCGTTATCGAGAAGTTGAGAGGGATTCTGGAAGGGGTTTCAATTTGCAAGTGTCAAGTTCCCGGTTTGGAGTACTTGGTGTTTGTGAAGGGCTCAGGTCCTCACTCAGTTGATTACGGGTGTGATGAGGATGGGAATGTGAAGCATCCTCCTAAGGAGGTGCTTGTGAGCCGGAAATGTGCCGAGGCGGTTCTTCGTGGCGCCGAGGTGTATGTTCCTGGTGTACTGGCTTGCAGTGCTCATGTTGAGAAGGGGGATGAGGTTGCGGTTTCGGTGTCGGTTGAGCAGCCCGGTGCTGAGGGTGGATGGGTGGTTGGGATCACTAGAGGGACTATTCTGCAAGGTGCTGAGACAGATCCTTATCATTTTGAAAGGAGTGGGCTGTATATTGGCCGAGGTAAAGCAATGATGTCAAGGTCTGGGATTTTTCGTGCTCCTGAAGGAATTGCTGTGGATTTCAGTGACAGAGTATATGATCTGCCTTCGTTTCGTGGCGTGCTTGAGGGGGAAATATTTCTTCAAAATCTGCCAAGCATTGTCACTGCTCATGCTCTAGATCCTCAAAAAGGTGAGCGCATACTAGACATGTGTGCTGCACCTGGAGGGAAAACAACTGCAATTGCAATTCTTATGAAGGATGAAGGGGAAATTGTTGCCGCTGATAGATCTCACAATAAGGTACTGGATATTCAGAAATTGGCTGCTGAAATGGGCCTTAGTTGTATTACCACTTGCAGACTTGATGCTCTGAAAGCTGTTTGTAGTCGTAATGAATCTGATAATATAACTAATCATTGCTGCACTGAGGATAGCTGTGATGTAACAATTCAAGGTTCCAACTTGTTGAAGTCAGAAGTAGAGAAAATTGAAGTGATTGCCACAGAAAGGTTGAATGCTGAAAAGGATTTTAAGAAAAATGTTACCAATGAAAAAGCGAATGAGAGAATTTACATTAGCAGAGCTGACATCAGGAAGGATATGCGAAGGAAACGGAATGGTCCAGGAAGAAATCAGTCTGTGGGTGGTAAGGCTGAGAAGTCAAAAGGCTTTGCTCCCAACAGCTTTGATCGGGTTCTTCTAGATGCTCCCTGCTCTGCTCTTGGTTTAAGACCTCGACTATTTGCTGGAGAGGAAACAGTCGAATCCTTGAGAAAACATGCAAAGTATCAAAGGAAAATGTTTGATCAGGCTGTTCAGCTAGTTCGTCCGGGTGGAGTTCTTGTGTATTCAACATGTACAATAAATCCTGGAGAGAATGAAGCTGTGGTTCGATATGCTTTGGATACCTACAAATTCCTATCCTTGGCATCACAGAACCCCAGAATTGGAGGACCTGGTCTAGTTGGCCGTTTTGAATTCCCTGATGGATATACTGAGGAGTGGCTAAGACCTGGTCAGGAAGAACTCGTTCAGAGGTTCGATCCATCGTCTCCGCTCGATACAATCGGGTTTTTCATAGCCAAGTTTATAGTTGGATCAAAAGAGGCTGACTTGGAACAATCTGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016427 GO:0016428 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F PUA

Protein Analysis

612

Amino Acids

67.66

Weight (kDa)

8.21

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUA	PF01472	162 - 199	4.1e-06	PUA domain
Methyltr_RsmB-F	PF01189	292 - 361	8.5e-16	16S rRNA methyltransferase RsmB/F
Methyltr_RsmB-F	PF01189	460 - 544	4e-19	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06560
fragaria_vesca	FvH4_6g38630 FvH4_6g38630
malus_domestica	MD09G1148800.v1.1 MD17G1135100.v1.1
prunus_persica	Prupe.3G177300_v2.0.a1 Prupe.3G177300_v2.0.a1
pyrus_communis	pycom09g06840 pycom17g12920
rosa_chinensis	RchiOBHm_Chr2g0152091
rosa_laevigata	RLG00000020607
rosa_multiflora	Rmu_co8372479.1_g000001 Rmu_sc0000760.1_g000014
rosa_roxburghii	Rroxscaffold_2G00095940
rosa_rugosa	Rorug02G0430900 Rorug02G0431000
rosa_samantha	Rh2DG515100
rosa_wichuraiana	Rw2G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	527
AccBSI	CCGCTC	1 cut(s)	1762
AccI	GTMKAC	1 cut(s)	317
AciI	CCGC	7 cut(s)	55, 162, 274, 515, 593, 984, 1760
AclWI	GGATC	5 cut(s)	653, 677, 878, 1742, 1810
AcoI	YGGCCR	3 cut(s)	275, 718, 1672
AcsI	RAATTY	3 cut(s)	1272, 1619, 1682
AcuI	CTGAAG	2 cut(s)	224, 786
AcyI	GRCGYC	1 cut(s)	528
AfaI	GTAC	5 cut(s)	197, 401, 552, 1008, 1564
AfiI	CCNNNNNNNGG	4 cut(s)	893, 1212, 1630, 1652
AflIII	ACRYGT	2 cut(s)	912, 1559
AjnI	CCWGG	6 cut(s)	544, 925, 1327, 1573, 1660, 1717
AluBI	AGCT	6 cut(s)	1082, 1140, 1289, 1389, 1525, 1589
AluI	AGCT	6 cut(s)	1082, 1140, 1289, 1389, 1525, 1589
Alw21I	GWGCWC	2 cut(s)	568, 763
Alw26I	GTCTC	3 cut(s)	68, 671, 1761
AlwI	GGATC	5 cut(s)	653, 677, 878, 1742, 1810
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	5 cut(s)	186, 275, 718, 1039, 1672
ApeKI	GCWGC	4 cut(s)	613, 920, 1028, 1125
ApoI	RAATTY	3 cut(s)	1272, 1619, 1682
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
Asp700I	GAANNNNTTC	2 cut(s)	840, 1734
AspLEI	GCGC	2 cut(s)	530, 903
AspS9I	GGNCC	5 cut(s)	158, 425, 1039, 1325, 1658
AsuC2I	CCSGG	3 cut(s)	390, 618, 1536
AsuHPI	GGTGA	2 cut(s)	43, 908
AvaI	CYCGRG	1 cut(s)	125
AvaII	GGWCC	4 cut(s)	158, 425, 1325, 1658
AxyI	CCTNAGG	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	2 cut(s)	568, 763
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	4 cut(s)	625, 907, 1015, 1112
BccI	CCATC	4 cut(s)	452, 627, 1685, 1759
BceAI	ACGGC	2 cut(s)	262, 1659
BciT130I	CCWGG	6 cut(s)	546, 927, 1329, 1575, 1662, 1719
BciVI	GTATCC	1 cut(s)	1603
BclI	TGATCA	1 cut(s)	1510
BcnI	CCSGG	3 cut(s)	390, 618, 1536
BcoDI	GTCTC	3 cut(s)	68, 671, 1761
BfaI	CTAG	6 cut(s)	651, 881, 908, 1406, 1526, 1667
BfoI	RGCGCY	1 cut(s)	531
BfuI	GTATCC	1 cut(s)	1603
BglII	AGATCT	1 cut(s)	992
BisI	GCNGC	6 cut(s)	275, 614, 921, 984, 1029, 1126
BlsI	GCNGC	6 cut(s)	276, 615, 922, 985, 1030, 1127
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	9 cut(s)	390, 546, 618, 927, 1329, 1536, 1575, 1662, 1719
Bme18I	GGWCC	4 cut(s)	158, 425, 1325, 1658
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	5 cut(s)	158, 425, 1039, 1325, 1658
BmiI	GGNNCC	3 cut(s)	160, 529, 1162
BmrFI	CCNGG	9 cut(s)	390, 546, 618, 927, 1329, 1536, 1575, 1662, 1719
BmsI	GCATC	6 cut(s)	45, 186, 481, 1060, 1399, 1643
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	3 cut(s)	948, 1473, 1596
Bpu10I	CCTNAGC	2 cut(s)	421, 624
BpuEI	CTTGAG	2 cut(s)	848, 1495
BpuMI	CCSGG	3 cut(s)	390, 618, 1536
BsaBI	GATNNNNATC	1 cut(s)	687
BsaHI	GRCGYC	1 cut(s)	528
BsaJI	CCNNGG	6 cut(s)	126, 183, 510, 531, 721, 1629
BsaXI	ACNNNNNCTCC	2 cut(s)	1533, 1563
Bsc4I	CCNNNNNNNGG	4 cut(s)	893, 1212, 1630, 1652
Bse1I	ACTGG	3 cut(s)	257, 558, 1014
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	2 cut(s)	738, 1120
Bse8I	GATNNNNATC	1 cut(s)	687
BseBI	CCWGG	6 cut(s)	546, 927, 1329, 1575, 1662, 1719
BseDI	CCNNGG	6 cut(s)	126, 183, 510, 531, 721, 1629
BseGI	GGATG	5 cut(s)	463, 472, 589, 638, 970
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	4 cut(s)	893, 1212, 1630, 1652
BseMI	GCAATG	2 cut(s)	738, 1120
BseMII	CTCAG	7 cut(s)	435, 447, 615, 666, 1122, 1350, 1692
BseNI	ACTGG	3 cut(s)	257, 558, 1014
BseRI	GAGGAG	1 cut(s)	1718
BseX3I	CGGCCG	1 cut(s)	275
BseXI	GCAGC	4 cut(s)	625, 907, 1015, 1112
BsgI	GTGCAG	2 cut(s)	906, 1111
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	5 cut(s)	188, 277, 720, 1041, 1674
BshNI	GGYRCC	1 cut(s)	527
BsiEI	CGRYCG	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	568, 763
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	4 cut(s)	390, 499, 618, 1535
BslFI	GGGAC	2 cut(s)	32, 670
BslI	CCNNNNNNNGG	4 cut(s)	893, 1212, 1630, 1652
BsmAI	GTCTC	3 cut(s)	68, 671, 1761
BsmBI	CGTCTC	1 cut(s)	1761
BsmFI	GGGAC	2 cut(s)	32, 670
BsmI	GAATGC	1 cut(s)	1225
BsnI	GGCC	5 cut(s)	188, 277, 720, 1041, 1674
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	3 cut(s)	422, 568, 763
Bsp1407I	TGTACA	1 cut(s)	1562
Bsp143I	GATC	9 cut(s)	645, 682, 802, 883, 992, 1393, 1510, 1747, 1802
BspACI	CCGC	7 cut(s)	55, 162, 274, 515, 593, 984, 1760
BspANI	GGCC	5 cut(s)	188, 277, 720, 1041, 1674
BspCNI	CTCAG	7 cut(s)	434, 446, 616, 667, 1123, 1351, 1693
BspLI	GGNNCC	3 cut(s)	160, 529, 1162
BspPI	GGATC	5 cut(s)	653, 677, 878, 1742, 1810
BspT107I	GGYRCC	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	1762
BsrDI	GCAATG	2 cut(s)	738, 1120
BsrGI	TGTACA	1 cut(s)	1562
BsrI	ACTGG	3 cut(s)	257, 558, 1014
BssECI	CCNNGG	6 cut(s)	126, 183, 510, 531, 721, 1629
BssMI	GATC	9 cut(s)	645, 682, 802, 883, 992, 1393, 1510, 1747, 1802
BssNI	GRCGYC	1 cut(s)	528
BssT1I	CCWWGG	2 cut(s)	183, 1629
Bst2UI	CCWGG	6 cut(s)	546, 927, 1329, 1575, 1662, 1719
Bst4CI	ACNGT	2 cut(s)	98, 1465
BstACI	GRCGYC	1 cut(s)	528
BstAUI	TGTACA	1 cut(s)	1562
BstC8I	GCNNGC	2 cut(s)	559, 824
BstENI	CCTNNNNNAGG	1 cut(s)	891
BstF5I	GGATG	5 cut(s)	463, 472, 589, 638, 970
BstH2I	RGCGCY	1 cut(s)	531
BstHHI	GCGC	2 cut(s)	530, 903
BstKTI	GATC	9 cut(s)	648, 685, 805, 886, 995, 1396, 1513, 1750, 1805
BstMAI	GTCTC	3 cut(s)	68, 671, 1761
BstMBI	GATC	9 cut(s)	645, 682, 802, 883, 992, 1393, 1510, 1747, 1802
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 1079
BstNI	CCWGG	6 cut(s)	546, 927, 1329, 1575, 1662, 1719
BstNSI	RCATGY	3 cut(s)	916, 1487, 1563
BstSCI	CCNGG	9 cut(s)	388, 544, 616, 925, 1327, 1534, 1573, 1660, 1717
BstV1I	GCAGC	4 cut(s)	625, 907, 1015, 1112
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	3 cut(s)	682, 883, 992
BstYI	RGATCY	3 cut(s)	682, 883, 992
BstZI	CGGCCG	1 cut(s)	275
Bsu36I	CCTNAGG	1 cut(s)	480
BsuI	GTATCC	1 cut(s)	1603
BsuRI	GGCC	5 cut(s)	188, 277, 720, 1041, 1674
BtsCI	GGATG	5 cut(s)	463, 472, 589, 638, 970
BtsI	GCAGTG	2 cut(s)	568, 867
BtsIMutI	CAGTG	4 cut(s)	568, 793, 867, 1128
Cac8I	GCNNGC	2 cut(s)	559, 824
CfoI	GCGC	2 cut(s)	530, 903
Cfr13I	GGNCC	5 cut(s)	158, 425, 1039, 1325, 1658
CsiI	ACCWGGT	2 cut(s)	1660, 1717
Csp6I	GTAC	5 cut(s)	196, 400, 551, 1007, 1563
CviAII	CATG	5 cut(s)	569, 875, 913, 1484, 1560
CviQI	GTAC	5 cut(s)	196, 400, 551, 1007, 1563
DinI	GGCGCC	1 cut(s)	529
DpnI	GATC	9 cut(s)	647, 684, 804, 885, 994, 1395, 1512, 1749, 1804
DpnII	GATC	9 cut(s)	645, 682, 802, 883, 992, 1393, 1510, 1747, 1802
EaeI	YGGCCR	3 cut(s)	275, 718, 1672
EagI	CGGCCG	1 cut(s)	275
EclXI	CGGCCG	1 cut(s)	275
Eco130I	CCWWGG	2 cut(s)	183, 1629
Eco147I	AGGCCT	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	422
Eco47I	GGWCC	4 cut(s)	158, 425, 1325, 1658
Eco52I	CGGCCG	1 cut(s)	275
Eco57I	CTGAAG	2 cut(s)	224, 786
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	891
EcoO109I	RGGNCCY	2 cut(s)	425, 1658
EcoRI	GAATTC	1 cut(s)	1682
EcoRII	CCWGG	6 cut(s)	544, 925, 1327, 1573, 1660, 1717
EcoT14I	CCWWGG	2 cut(s)	183, 1629
EcoT38I	GRGCYC	1 cut(s)	422
EgeI	GGCGCC	1 cut(s)	529
EheI	GGCGCC	1 cut(s)	529
ErhI	CCWWGG	2 cut(s)	183, 1629
Esp3I	CGTCTC	1 cut(s)	1761
FaeI	CATG	5 cut(s)	572, 878, 916, 1487, 1563
FaqI	GGGAC	2 cut(s)	32, 670
FatI	CATG	5 cut(s)	568, 874, 912, 1483, 1559
FauI	CCCGC	2 cut(s)	62, 169
FbaI	TGATCA	1 cut(s)	1510
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	6 cut(s)	275, 614, 921, 984, 1029, 1126
FokI	GGATG	5 cut(s)	459, 470, 596, 645, 977
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	6 cut(s)	275, 614, 921, 984, 1029, 1126
FspBI	CTAG	6 cut(s)	651, 881, 908, 1406, 1526, 1667
GlaI	GCGC	2 cut(s)	529, 902
GluI	GCNGC	6 cut(s)	275, 614, 921, 984, 1029, 1126
GsuI	CTGGAG	3 cut(s)	948, 1473, 1596
HaeII	RGCGCY	1 cut(s)	531
HaeIII	GGCC	5 cut(s)	188, 277, 720, 1041, 1674
HapII	CCGG	4 cut(s)	390, 499, 618, 1535
HhaI	GCGC	2 cut(s)	530, 903
Hin1I	GRCGYC	1 cut(s)	528
Hin1II	CATG	5 cut(s)	572, 878, 916, 1487, 1563
Hin6I	GCGC	2 cut(s)	528, 901
HinP1I	GCGC	2 cut(s)	528, 901
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	5 cut(s)	121, 134, 352, 1100, 1469
HpaII	CCGG	4 cut(s)	390, 499, 618, 1535
HphI	GGTGA	2 cut(s)	43, 908
Hpy166II	GTNNAC	3 cut(s)	304, 318, 551
Hpy188I	TCNGA	7 cut(s)	29, 250, 1020, 1077, 1105, 1180, 1740
Hpy188III	TCNNGA	8 cut(s)	125, 337, 356, 764, 881, 1297, 1406, 1724
Hpy8I	GTNNAC	3 cut(s)	304, 318, 551
HpyCH4III	ACNGT	2 cut(s)	98, 1465
HpyCH4IV	ACGT	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 1079
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	1 cut(s)	528
Hsp92II	CATG	5 cut(s)	572, 878, 916, 1487, 1563
HspAI	GCGC	2 cut(s)	528, 901
KasI	GGCGCC	1 cut(s)	527
Ksp22I	TGATCA	1 cut(s)	1510
Kzo9I	GATC	9 cut(s)	645, 682, 802, 883, 992, 1393, 1510, 1747, 1802
LmnI	GCTCC	3 cut(s)	766, 1384, 1417
Lsp1109I	GCAGC	4 cut(s)	625, 907, 1015, 1112
LweI	GCATC	6 cut(s)	45, 186, 481, 1060, 1399, 1643
MabI	ACCWGGT	2 cut(s)	1660, 1717
MaeI	CTAG	6 cut(s)	651, 881, 908, 1406, 1526, 1667
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	7 cut(s)	92, 98, 214, 788, 865, 1147, 1246
MalI	GATC	9 cut(s)	647, 684, 804, 885, 994, 1395, 1512, 1749, 1804
MbiI	CCGCTC	1 cut(s)	1762
MboI	GATC	9 cut(s)	645, 682, 802, 883, 992, 1393, 1510, 1747, 1802
MfeI	CAATTG	1 cut(s)	945
MflI	RGATCY	3 cut(s)	682, 883, 992
MhlI	GDGCHC	3 cut(s)	422, 568, 763
Mly113I	GGCGCC	1 cut(s)	528
MmeI	TCCRAC	4 cut(s)	98, 171, 1188, 1780
MroXI	GAANNNNTTC	2 cut(s)	840, 1734
MseI	TTAA	3 cut(s)	191, 1236, 1433
MspA1I	CMGCKG	1 cut(s)	986
MspI	CCGG	4 cut(s)	390, 499, 618, 1535
MspR9I	CCNGG	9 cut(s)	390, 546, 618, 927, 1329, 1536, 1575, 1662, 1719
MunI	CAATTG	1 cut(s)	945
Mva1269I	GAATGC	1 cut(s)	1225
MvaI	CCWGG	6 cut(s)	546, 927, 1329, 1575, 1662, 1719
MwoI	GCNNNNNNNGC	2 cut(s)	563, 1079
NarI	GGCGCC	1 cut(s)	528
NciI	CCSGG	3 cut(s)	390, 618, 1536
NdeII	GATC	9 cut(s)	645, 682, 802, 883, 992, 1393, 1510, 1747, 1802
NlaIII	CATG	5 cut(s)	572, 878, 916, 1487, 1563
NlaIV	GGNNCC	3 cut(s)	160, 529, 1162
NmeAIII	GCCGAG	3 cut(s)	535, 556, 746
NmuCI	GTSAC	3 cut(s)	214, 788, 865
NspI	RCATGY	3 cut(s)	916, 1487, 1563
PceI	AGGCCT	1 cut(s)	188
PciI	ACATGT	2 cut(s)	912, 1559
PctI	GAATGC	1 cut(s)	1225
PdmI	GAANNNNTTC	2 cut(s)	840, 1734
PfeI	GAWTC	5 cut(s)	121, 134, 352, 1100, 1469
PflFI	GACNNNGTC	2 cut(s)	1662, 1719
PfoI	TCCNGGA	2 cut(s)	1327, 1573
PkrI	GCNGC	6 cut(s)	276, 615, 922, 985, 1030, 1127
PluTI	GGCGCC	1 cut(s)	531
PpuMI	RGGWCCY	2 cut(s)	425, 1658
PscI	ACATGT	2 cut(s)	912, 1559
Psp5II	RGGWCCY	2 cut(s)	425, 1658
Psp6I	CCWGG	6 cut(s)	544, 925, 1327, 1573, 1660, 1717
PspGI	CCWGG	6 cut(s)	544, 925, 1327, 1573, 1660, 1717
PspN4I	GGNNCC	3 cut(s)	160, 529, 1162
PspPI	GGNCC	5 cut(s)	158, 425, 1039, 1325, 1658
PspPPI	RGGWCCY	2 cut(s)	425, 1658
PsuI	RGATCY	3 cut(s)	682, 883, 992
PsyI	GACNNNGTC	2 cut(s)	1662, 1719
RsaI	GTAC	5 cut(s)	197, 401, 552, 1008, 1564
RsaNI	GTAC	5 cut(s)	196, 400, 551, 1007, 1563
SalI	GTCGAC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	191, 1236, 1433
SatI	GCNGC	6 cut(s)	275, 614, 921, 984, 1029, 1126
Sau3AI	GATC	9 cut(s)	645, 682, 802, 883, 992, 1393, 1510, 1747, 1802
Sau96I	GGNCC	5 cut(s)	158, 425, 1039, 1325, 1658
ScaI	AGTACT	1 cut(s)	401
ScrFI	CCNGG	9 cut(s)	390, 546, 618, 927, 1329, 1536, 1575, 1662, 1719
SduI	GDGCHC	3 cut(s)	422, 568, 763
SexAI	ACCWGGT	2 cut(s)	1660, 1717
SfaNI	GCATC	6 cut(s)	45, 186, 481, 1060, 1399, 1643
SfoI	GGCGCC	1 cut(s)	529
SinI	GGWCC	4 cut(s)	158, 425, 1325, 1658
SmlI	CTYRAG	2 cut(s)	827, 1474
SmoI	CTYRAG	2 cut(s)	827, 1474
SseBI	AGGCCT	1 cut(s)	188
SsiI	CCGC	7 cut(s)	55, 162, 274, 515, 593, 984, 1760
SspDI	GGCGCC	1 cut(s)	527
SspI	AATATT	1 cut(s)	840
SspMI	CTAG	6 cut(s)	651, 881, 908, 1406, 1526, 1667
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	9 cut(s)	388, 544, 616, 925, 1327, 1534, 1573, 1660, 1717
StyI	CCWWGG	2 cut(s)	183, 1629
TaaI	ACNGT	2 cut(s)	98, 1465
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	8 cut(s)	132, 317, 336, 1441, 1467, 1597, 1746, 1764
TatI	WGTACW	3 cut(s)	399, 550, 1562
TauI	GCSGC	2 cut(s)	277, 986
TfiI	GAWTC	5 cut(s)	121, 134, 352, 1100, 1469
Tru1I	TTAA	3 cut(s)	191, 1236, 1433
Tru9I	TTAA	3 cut(s)	191, 1236, 1433
TscAI	CASTG	4 cut(s)	568, 793, 874, 1135
TseFI	GTSAC	3 cut(s)	214, 788, 865
TseI	GCWGC	4 cut(s)	613, 920, 1028, 1125
Tsp45I	GTSAC	3 cut(s)	214, 788, 865
TspDTI	ATGAA	7 cut(s)	17, 974, 981, 1113, 1269, 1599, 1771
TspGWI	ACGGA	1 cut(s)	1333
TspRI	CASTG	4 cut(s)	568, 793, 874, 1135
Tth111I	GACNNNGTC	2 cut(s)	1662, 1719
VpaK11BI	GGWCC	4 cut(s)	158, 425, 1325, 1658
XagI	CCTNNNNNAGG	1 cut(s)	891
XapI	RAATTY	3 cut(s)	1272, 1619, 1682
XbaI	TCTAGA	2 cut(s)	880, 1405
XceI	RCATGY	3 cut(s)	916, 1487, 1563
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 114
XmiI	GTMKAC	1 cut(s)	317
XmnI	GAANNNNTTC	2 cut(s)	840, 1734
XspI	CTAG	6 cut(s)	651, 881, 908, 1406, 1526, 1667
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.