Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013335

Physical Location & Seq

Genomic Coordinates Reverse (-)

55270948 .. 55273830

Gene Structure 2883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0430900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAGTTCCTCTAGATCTGGCTTCATTGGCTCCGACCACAACCTCAATTCCGAGGGAAGAGATCCTGGTCTTACTGCTCAGAAGCAGATTAAGTCTCGGATTACACCCAAGATAGTGAAGCGCGTTCATGTTTTGAGACAGATAGAGGGGCAGCATAAGAAGCTGGAACAACAATTTTTTGAGGACAGAGCTGCACTGGTAGATAAATACCATCAGCTTTACAAACCTCTCTACGAAAAGAGATATGAGATTGTTAATGGTATCACTGAAGTGGAAGGAGTGAAAACTCCAGACCAAGGACAAGAAGCCACTGAAGAGAAAGGAGTGCCTAACTTTTGGCTGTCCGCACTGAAGAACAATAAGGAACTTCTGATAATGGAGCATGACGAACACGCTCTCCAGTATCTCAAAGATATCAAGTGGTCCAGGATACATGATCCTAAAGGATTTAGGCTGGAATTCTTATTTGATCCTAATCCTTACTTTCGAAACTCCGTCCTGACAAAAACATATTACATGATTGAAGAACATGAGCCCATATGGAGCAAAGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAAAGCTTGACAATCAGTCCAAGAAAGGACCCAAAGAATGCCAAGTCCATGACTGCAGCTGATATTTGTTACAGCTTCTTTACGTTCTTCAAACCTCCCCAACATGATGATTATACCGGCGGGGCAGATATGCTTAACAATTCGAGACAAGATCATCCCTTACGCGGTGTCATGGTTCACTGGGGAATTAAGCTGTTAAAGGATTCGAGTTTGAGGATGACGATGACAGTGACTATTATTTTTACTCTGATAGGTGATGATGAGGACGAGGAGGGTGCTGCTGCTGATGACAAAAACAAAGAGGAGGAAGATGGCAAAAGAAAGGAATTAAGTGGCTGGACTAATGCTGAGAGAGCAATGGCTGGGCTAACGCTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016427 GO:0016428 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F PUA

Protein Analysis

320

Amino Acids

36.92

Weight (kDa)

5.92

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAP	PF00956	40 - 233	4e-54	Nucleosome assembly protein (NAP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06560
fragaria_vesca	FvH4_6g38630 FvH4_6g38630
malus_domestica	MD09G1148800.v1.1 MD17G1135100.v1.1
prunus_persica	Prupe.3G177300_v2.0.a1 Prupe.3G177300_v2.0.a1
pyrus_communis	pycom09g06840 pycom17g12920
rosa_chinensis	RchiOBHm_Chr2g0152091
rosa_laevigata	RLG00000020607
rosa_multiflora	Rmu_co8372479.1_g000001 Rmu_sc0000760.1_g000014
rosa_roxburghii	Rroxscaffold_2G00095940
rosa_rugosa	Rorug02G0430900 Rorug02G0431000
rosa_samantha	Rh2DG515100
rosa_wichuraiana	Rw2G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	123, 747
AciI	CCGC	3 cut(s)	345, 702, 747
AclWI	GGATC	3 cut(s)	56, 431, 464
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	3 cut(s)	288, 333, 371
AfiI	CCNNNNNNNGG	2 cut(s)	296, 746
AgsI	TTSAA	2 cut(s)	524, 673
AhdI	GACNNNNNGTC	1 cut(s)	597
AjnI	CCWGG	2 cut(s)	64, 425
AleI	CACNNNNGTG	1 cut(s)	269
AloI	GAACNNNNNNTCC	2 cut(s)	381, 413
AluBI	AGCT	7 cut(s)	163, 191, 217, 588, 641, 657, 775
AluI	AGCT	7 cut(s)	163, 191, 217, 588, 641, 657, 775
Alw26I	GTCTC	3 cut(s)	99, 130, 721
AlwI	GGATC	3 cut(s)	56, 431, 464
Ama87I	CYCGRG	1 cut(s)	578
ApeKI	GCWGC	6 cut(s)	151, 191, 638, 860, 863, 955
ApoI	RAATTY	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	423, 610
AsuC2I	CCSGG	2 cut(s)	579, 580
AsuHPI	GGTGA	1 cut(s)	848
AsuII	TTCGAA	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	578
AvaII	GGWCC	2 cut(s)	423, 610
BanII	GRGCYC	1 cut(s)	537
BbvI	GCAGC	6 cut(s)	163, 178, 650, 847, 850, 942
BccI	CCATC	2 cut(s)	219, 887
BcgI	CGANNNNNNTGC	4 cut(s)	535, 569, 839, 873
BciT130I	CCWGG	2 cut(s)	66, 427
BciVI	GTATCC	2 cut(s)	423, 585
BcnI	CCSGG	2 cut(s)	579, 580
BcoDI	GTCTC	3 cut(s)	99, 130, 721
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	636
BfuI	GTATCC	2 cut(s)	423, 585
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	6 cut(s)	152, 192, 639, 861, 864, 956
BlsI	GCNGC	6 cut(s)	153, 193, 640, 862, 865, 957
Bme1390I	CCNGG	4 cut(s)	66, 427, 579, 580
Bme18I	GGWCC	2 cut(s)	423, 610
BmeRI	GACNNNNNGTC	1 cut(s)	597
BmeT110I	CYCGRG	1 cut(s)	578
BmgT120I	GGNCC	2 cut(s)	423, 610
BmiI	GGNNCC	2 cut(s)	31, 612
BmrFI	CCNGG	4 cut(s)	66, 427, 579, 580
BmrI	ACTGGG	1 cut(s)	772
BmuI	ACTGGG	1 cut(s)	772
BpmI	CTGGAG	2 cut(s)	273, 383
Bpu14I	TTCGAA	1 cut(s)	487
BpuMI	CCSGG	2 cut(s)	579, 580
BsaBI	GATNNNNATC	2 cut(s)	474, 573
BsaJI	CCNNGG	3 cut(s)	51, 295, 578
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 746
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	3 cut(s)	201, 400, 767
Bse3DI	GCAATG	1 cut(s)	945
Bse8I	GATNNNNATC	2 cut(s)	474, 573
BseBI	CCWGG	2 cut(s)	66, 427
BseDI	CCNNGG	3 cut(s)	51, 295, 578
BseGI	GGATG	2 cut(s)	736, 804
BseJI	GATNNNNATC	2 cut(s)	474, 573
BseLI	CCNNNNNNNGG	2 cut(s)	296, 746
BseMI	GCAATG	1 cut(s)	945
BseMII	CTCAG	2 cut(s)	92, 921
BseNI	ACTGG	3 cut(s)	201, 400, 767
BseRI	GAGGAG	2 cut(s)	866, 899
BseXI	GCAGC	6 cut(s)	163, 178, 650, 847, 850, 942
BseYI	CCCAGC	1 cut(s)	944
BsgI	GTGCAG	1 cut(s)	177
Bsh1236I	CGCG	2 cut(s)	123, 747
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	2 cut(s)	579, 699
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	2 cut(s)	296, 746
BsmAI	GTCTC	3 cut(s)	99, 130, 721
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	625
BsoBI	CYCGRG	1 cut(s)	578
Bsp119I	TTCGAA	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	5 cut(s)	14, 61, 436, 469, 733
BspACI	CCGC	3 cut(s)	345, 702, 747
BspCNI	CTCAG	2 cut(s)	91, 922
BspFNI	CGCG	2 cut(s)	123, 747
BspLI	GGNNCC	2 cut(s)	31, 612
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	3 cut(s)	56, 431, 464
BspT104I	TTCGAA	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	945
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	3 cut(s)	201, 400, 767
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	3 cut(s)	51, 295, 578
BssMI	GATC	5 cut(s)	14, 61, 436, 469, 733
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	66, 427
Bst4CI	ACNGT	1 cut(s)	811
Bst6I	CTCTTC	2 cut(s)	52, 309
BstBI	TTCGAA	1 cut(s)	487
BstDEI	CTNAG	2 cut(s)	78, 930
BstF5I	GGATG	2 cut(s)	736, 804
BstFNI	CGCG	2 cut(s)	123, 747
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	5 cut(s)	17, 64, 439, 472, 736
BstMAI	GTCTC	3 cut(s)	99, 130, 721
BstMBI	GATC	5 cut(s)	14, 61, 436, 469, 733
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 160, 935, 955
BstNI	CCWGG	2 cut(s)	66, 427
BstSCI	CCNGG	4 cut(s)	64, 425, 577, 578
BstSFI	CTRYAG	1 cut(s)	636
BstUI	CGCG	2 cut(s)	123, 747
BstV1I	GCAGC	6 cut(s)	163, 178, 650, 847, 850, 942
BstX2I	RGATCY	2 cut(s)	14, 61
BstYI	RGATCY	2 cut(s)	14, 61
BsuI	GTATCC	2 cut(s)	423, 585
BtsCI	GGATG	2 cut(s)	736, 804
BtsIMutI	CAGTG	6 cut(s)	194, 264, 309, 347, 760, 816
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	2 cut(s)	423, 610
Cfr9I	CCCGGG	1 cut(s)	578
CviAII	CATG	8 cut(s)	128, 383, 434, 517, 530, 631, 686, 754
DdeI	CTNAG	2 cut(s)	78, 930
DpnI	GATC	5 cut(s)	16, 63, 438, 471, 735
DpnII	GATC	5 cut(s)	14, 61, 436, 469, 733
DriI	GACNNNNNGTC	1 cut(s)	597
Eam1104I	CTCTTC	2 cut(s)	52, 309
Eam1105I	GACNNNNNGTC	1 cut(s)	597
EarI	CTCTTC	2 cut(s)	52, 309
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	537
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	2 cut(s)	423, 610
Eco57I	CTGAAG	3 cut(s)	288, 333, 371
Eco88I	CYCGRG	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	610
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	64, 425
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	8 cut(s)	131, 386, 437, 520, 533, 634, 689, 757
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	8 cut(s)	127, 382, 433, 516, 529, 630, 685, 753
FauI	CCCGC	1 cut(s)	695
FauNDI	CATATG	1 cut(s)	539
Fnu4HI	GCNGC	6 cut(s)	152, 192, 639, 861, 864, 956
FokI	GGATG	2 cut(s)	723, 811
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	6 cut(s)	152, 192, 639, 861, 864, 956
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	6 cut(s)	152, 192, 639, 861, 864, 956
GsaI	CCCAGC	1 cut(s)	948
GsuI	CTGGAG	2 cut(s)	273, 383
HapII	CCGG	2 cut(s)	579, 699
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	8 cut(s)	131, 386, 437, 520, 533, 634, 689, 757
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	586
HinfI	GANTC	1 cut(s)	785
HpaII	CCGG	2 cut(s)	579, 699
HphI	GGTGA	1 cut(s)	848
Hpy166II	GTNNAC	1 cut(s)	760
Hpy188I	TCNGA	6 cut(s)	34, 52, 81, 99, 372, 831
Hpy188III	TCNNGA	5 cut(s)	12, 290, 499, 556, 726
Hpy8I	GTNNAC	1 cut(s)	760
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	811
HpyCH4IV	ACGT	1 cut(s)	665
HpyCH4V	TGCA	3 cut(s)	194, 638, 958
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 160, 935, 955
HpyF3I	CTNAG	2 cut(s)	78, 930
HpySE526I	ACGT	1 cut(s)	665
Hsp92II	CATG	8 cut(s)	131, 386, 437, 520, 533, 634, 689, 757
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	14, 61, 436, 469, 733
LmnI	GCTCC	3 cut(s)	35, 379, 543
Lsp1109I	GCAGC	6 cut(s)	163, 178, 650, 847, 850, 942
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	665
MaeIII	GTNAC	2 cut(s)	650, 811
MalI	GATC	5 cut(s)	16, 63, 438, 471, 735
MboI	GATC	5 cut(s)	14, 61, 436, 469, 733
MboII	GAAGA	6 cut(s)	69, 326, 364, 536, 661, 902
MflI	RGATCY	2 cut(s)	14, 61
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	6 cut(s)	46, 173, 458, 721, 768, 908
MmeI	TCCRAC	1 cut(s)	57
MseI	TTAA	6 cut(s)	90, 255, 717, 771, 779, 911
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	2 cut(s)	579, 699
MspR9I	CCNGG	4 cut(s)	66, 427, 579, 580
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	2 cut(s)	66, 427
MvnI	CGCG	2 cut(s)	123, 747
MwoI	GCNNNNNNNGC	4 cut(s)	27, 160, 935, 955
NciI	CCSGG	2 cut(s)	579, 580
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	5 cut(s)	14, 61, 436, 469, 733
NlaIII	CATG	8 cut(s)	131, 386, 437, 520, 533, 634, 689, 757
NlaIV	GGNNCC	2 cut(s)	31, 612
NmuCI	GTSAC	1 cut(s)	811
NspV	TTCGAA	1 cut(s)	487
OliI	CACNNNNGTG	1 cut(s)	269
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	1 cut(s)	785
PfoI	TCCNGGA	1 cut(s)	425
PkrI	GCNGC	6 cut(s)	153, 193, 640, 862, 865, 957
PpuMI	RGGWCCY	1 cut(s)	610
Psp5II	RGGWCCY	1 cut(s)	610
Psp6I	CCWGG	2 cut(s)	64, 425
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	2 cut(s)	64, 425
PspN4I	GGNNCC	2 cut(s)	31, 612
PspPI	GGNCC	2 cut(s)	423, 610
PspPPI	RGGWCCY	1 cut(s)	610
PstI	CTGCAG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	14, 61
PvuII	CAGCTG	1 cut(s)	641
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	6 cut(s)	90, 255, 717, 771, 779, 911
SatI	GCNGC	6 cut(s)	152, 192, 639, 861, 864, 956
Sau3AI	GATC	5 cut(s)	14, 61, 436, 469, 733
Sau96I	GGNCC	2 cut(s)	423, 610
ScrFI	CCNGG	4 cut(s)	66, 427, 579, 580
SduI	GDGCHC	1 cut(s)	537
SfcI	CTRYAG	1 cut(s)	636
SfuI	TTCGAA	1 cut(s)	487
SinI	GGWCC	2 cut(s)	423, 610
SmaI	CCCGGG	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	6 cut(s)	46, 173, 458, 721, 768, 908
SsiI	CCGC	3 cut(s)	345, 702, 747
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	4 cut(s)	64, 425, 577, 578
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	811
TaiI	ACGT	1 cut(s)	668
TaqI	TCGA	3 cut(s)	487, 725, 788
TasI	AATT	6 cut(s)	46, 173, 458, 721, 768, 908
TfiI	GAWTC	1 cut(s)	785
Tru1I	TTAA	6 cut(s)	90, 255, 717, 771, 779, 911
Tru9I	TTAA	6 cut(s)	90, 255, 717, 771, 779, 911
TscAI	CASTG	6 cut(s)	201, 271, 316, 354, 767, 816
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	6 cut(s)	151, 191, 638, 860, 863, 955
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	2 cut(s)	13, 116
TspGWI	ACGGA	2 cut(s)	484, 575
TspMI	CCCGGG	1 cut(s)	578
TspRI	CASTG	6 cut(s)	201, 271, 316, 354, 767, 816
VpaK11BI	GGWCC	2 cut(s)	423, 610
XapI	RAATTY	1 cut(s)	458
XbaI	TCTAGA	1 cut(s)	11
XmaI	CCCGGG	1 cut(s)	578
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.