Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010145

Physical Location & Seq

Genomic Coordinates Forward (+)

15226762 .. 15227642

Gene Structure 881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1177900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGACACTTGTTTGGTCATTGAAGCGCATAAGTTTTATACTCCTTTTCTGTGCATGTCTTCCAAGAAAGGCCGTGGAAGTAGGAGTTGCTGGGATTGTTGTCTCGAACCATGGAGGCCGCCAATTCGATTGTACTCCTCCCACTATTTCTGTCCTGGATGAGTGCAACTCTATCAACCGCTGCTTCATCATTTCTTTTTTCCTGTTACGAAATCAATTGGAAAGTTGTATGATAAGGTGTTCAGGTGGTTCATGCTGCTGGAGGAAAAGATCCTGTTCTTTTCGATGGAGGAGTAAGGCAAGGGAAGGCGTGTTCAAGGCGTTAACCCTCGGTGCACAAACTGTTCTCGTTGGAAGGCTGGTTATCTACGGCCTTGCAGCAGGCGGAGGACGGGGAGTGAGGCGGGTGATCGAAATGCTCGAGGATGAGTTTGAGCTGACAATGGCCCTCTCTTGCTGTCCTAGCGTCAAAGATATTACCAGGAGCCATGTGAGAACACTAGGTGATCATAAACTCTTTGACCAAAGAAATAAAGATCATAAACTCAACTCCATGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

187

Amino Acids

20.85

Weight (kDa)

9.44

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	22 - 55	3.4e-11	FMN-dependent dehydrogenase
FMN_dh	PF01070	104 - 165	1.1e-20	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14150 AT3G14150 AT3G14150 AT3G14150 AT3G14150
malus_domestica	MD09G1177900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146491 RchiOBHm_Chr2g0146521
rosa_multiflora	Rmu_sc0001986.1_g000007 Rmu_sc0001986.1_g000010 Rmu_sc0005157.1_g000015
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451300 Rh2BG463800 Rh2BG463900 Rh2BG464000 Rh2BG464100 Rh2CG438100 Rh2CG438300 Rh2DG473200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	118, 178, 384, 403
AclWI	GGATC	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	503
AfaI	GTAC	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	22, 316
AjnI	CCWGG	2 cut(s)	153, 479
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	1 cut(s)	436
AluI	AGCT	1 cut(s)	436
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	106
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	4 cut(s)	69, 115, 370, 444
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	180, 255, 377
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	445
AsuHPI	GGTGA	2 cut(s)	418, 515
AvaI	CYCGRG	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	3 cut(s)	167, 242, 389
BccI	CCATC	1 cut(s)	279
BceAI	ACGGC	2 cut(s)	56, 385
BciT130I	CCWGG	2 cut(s)	155, 481
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	2 cut(s)	462, 500
BisI	GCNGC	4 cut(s)	118, 181, 256, 378
BlsI	GCNGC	4 cut(s)	119, 182, 257, 379
Bme1390I	CCNGG	2 cut(s)	155, 481
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	2 cut(s)	155, 481
BpiI	GAAGAC	1 cut(s)	50
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpmI	CTGGAG	1 cut(s)	280
BsaJI	CCNNGG	3 cut(s)	72, 109, 328
BseBI	CCWGG	2 cut(s)	155, 481
BseDI	CCNNGG	3 cut(s)	72, 109, 328
BseGI	GGATG	2 cut(s)	163, 430
BseRI	GAGGAG	2 cut(s)	126, 304
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	167, 242, 389
BseYI	CCCAGC	1 cut(s)	89
BshFI	GGCC	4 cut(s)	71, 117, 372, 446
BsiHKAI	GWGCWC	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	4 cut(s)	71, 117, 372, 446
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	269, 408, 505, 535
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	4 cut(s)	118, 178, 384, 403
BspANI	GGCC	4 cut(s)	71, 117, 372, 446
BspLI	GGNNCC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	264
BssECI	CCNNGG	3 cut(s)	72, 109, 328
BssMI	GATC	4 cut(s)	269, 408, 505, 535
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	155, 481
Bst4CI	ACNGT	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	382
BstDSI	CCRYGG	2 cut(s)	72, 109
BstF5I	GGATG	2 cut(s)	163, 430
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	4 cut(s)	272, 411, 508, 538
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	4 cut(s)	269, 408, 505, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	462
BstNI	CCWGG	2 cut(s)	155, 481
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	153, 479
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	167, 242, 389
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	4 cut(s)	71, 117, 372, 446
BtgI	CCRYGG	2 cut(s)	72, 109
BtsCI	GGATG	2 cut(s)	163, 430
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	445
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	5 cut(s)	54, 110, 252, 488, 553
CviJI	RGCY	7 cut(s)	71, 117, 358, 372, 436, 446, 486
CviKI_1	RGCY	7 cut(s)	71, 117, 358, 372, 436, 446, 486
CviQI	GTAC	1 cut(s)	132
DpnI	GATC	4 cut(s)	271, 410, 507, 537
DpnII	GATC	4 cut(s)	269, 408, 505, 535
DraIII	CACNNNGTG	1 cut(s)	503
EciI	GGCGGA	1 cut(s)	399
Eco130I	CCWWGG	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	153, 479
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	5 cut(s)	57, 113, 255, 491, 556
FatI	CATG	5 cut(s)	53, 109, 251, 487, 552
FauI	CCCGC	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	4 cut(s)	118, 181, 256, 378
FokI	GGATG	2 cut(s)	170, 437
Fsp4HI	GCNGC	4 cut(s)	118, 181, 256, 378
FspBI	CTAG	2 cut(s)	462, 500
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	4 cut(s)	118, 181, 256, 378
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	280
HaeIII	GGCC	4 cut(s)	71, 117, 372, 446
HgaI	GACGC	1 cut(s)	454
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	57, 113, 255, 491, 556
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HpaI	GTTAAC	1 cut(s)	324
HphI	GGTGA	2 cut(s)	418, 515
Hpy166II	GTNNAC	2 cut(s)	324, 335
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	2 cut(s)	324, 335
HpyAV	CCTTC	2 cut(s)	299, 348
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	4 cut(s)	53, 165, 335, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	462
Hsp92II	CATG	5 cut(s)	57, 113, 255, 491, 556
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	505
KspAI	GTTAAC	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	269, 408, 505, 535
LmnI	GCTCC	1 cut(s)	483
Lsp1109I	GCAGC	3 cut(s)	167, 242, 389
MaeI	CTAG	2 cut(s)	462, 500
MaeIII	GTNAC	1 cut(s)	204
MalI	GATC	4 cut(s)	271, 410, 507, 537
MboI	GATC	4 cut(s)	269, 408, 505, 535
MboII	GAAGA	1 cut(s)	50
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	2 cut(s)	122, 215
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	9 cut(s)	107, 147, 255, 282, 338, 380, 393, 415, 458
MseI	TTAA	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	155, 481
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	2 cut(s)	155, 481
MwoI	GCNNNNNNNGC	1 cut(s)	462
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	4 cut(s)	269, 408, 505, 535
NlaIII	CATG	5 cut(s)	57, 113, 255, 491, 556
NlaIV	GGNNCC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	4 cut(s)	119, 182, 257, 379
Psp6I	CCWGG	2 cut(s)	153, 479
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	153, 479
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	1 cut(s)	445
PspXI	VCTCGAGB	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	4 cut(s)	118, 181, 256, 378
Sau3AI	GATC	4 cut(s)	269, 408, 505, 535
Sau96I	GGNCC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	155, 481
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	4 cut(s)	239, 247, 438, 505
Sfr274I	CTCGAG	1 cut(s)	419
SlaI	CTCGAG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	2 cut(s)	122, 215
SsiI	CCGC	4 cut(s)	118, 178, 384, 403
SspMI	CTAG	2 cut(s)	462, 500
StyD4I	CCNGG	2 cut(s)	153, 479
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	5 cut(s)	104, 126, 283, 411, 420
TasI	AATT	2 cut(s)	122, 215
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TseI	GCWGC	3 cut(s)	180, 255, 377
TspDTI	ATGAA	2 cut(s)	175, 240
VneI	GTGCAC	1 cut(s)	333
XceI	RCATGY	1 cut(s)	57
XhoI	CTCGAG	1 cut(s)	419
XspI	CTAG	2 cut(s)	462, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.