Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010145

Physical Location & Seq

Genomic Coordinates Reverse (-)

68484944 .. 68505166

Gene Structure 20223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG473200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTATAATTATTGCAATGGAATGGGTCAGGAGAGGTGGCTACTTTTAGAGCAGCAGCTGCATCCAACACTATACTATAATGCAAGAAAGGATGTGGAAGTTGGTGTTGCCGGGATTGTTGTCTCTAATCACGGAGCACGACAACTAGACTACACTCCGGCCACTATTTCTGTCCTGGAAGAGGTGGTTCAAGCTGTTGGAAGGAAAGTTCCTGTTCTTTTTTCCTGCGAGAATTGTAATGTAAATGTGTTAGTGCAGGTTGGAAGACCTATTATCTATGGCCTTGCAGCAAATGGAGAAGATGGGGTGAGAAAGGTCATGAAGATGTTGAAGGATAAGTTAGAGCTCACTATGGCTCTCTCTGGCTGTCCTAGTGTTAAGGATATTACCAGGAGCCACATATGGCTTGAATTTTCTGCATTTGCATTCAAGTTCGTCCTCTGTCTTGCCATTTCTTCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

154

Amino Acids

17.07

Weight (kDa)

7.63

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	27 - 75	5.9e-16	FMN-dependent dehydrogenase
FMN_dh	PF01070	85 - 135	4.7e-15	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14150 AT3G14150 AT3G14150 AT3G14150 AT3G14150
malus_domestica	MD09G1177900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146491 RchiOBHm_Chr2g0146521
rosa_multiflora	Rmu_sc0001986.1_g000007 Rmu_sc0001986.1_g000010 Rmu_sc0005157.1_g000015
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451300 Rh2BG463800 Rh2BG463900 Rh2BG464000 Rh2BG464100 Rh2CG438100 Rh2CG438300 Rh2DG473200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	410
AcuI	CTGAAG	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	4 cut(s)	191, 331, 410, 430
AjnI	CCWGG	2 cut(s)	174, 389
AloI	GAACNNNNNNTCC	2 cut(s)	192, 224
AluBI	AGCT	3 cut(s)	58, 194, 346
AluI	AGCT	3 cut(s)	58, 194, 346
Alw21I	GWGCWC	2 cut(s)	139, 348
Alw26I	GTCTC	1 cut(s)	127
AlwNI	CAGNNNCTG	1 cut(s)	58
AoxI	GGCC	2 cut(s)	159, 280
ApeKI	GCWGC	4 cut(s)	52, 55, 58, 287
ApoI	RAATTY	1 cut(s)	410
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	271
Bbv12I	GWGCWC	2 cut(s)	139, 348
BbvI	GCAGC	4 cut(s)	45, 64, 67, 299
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	2 cut(s)	176, 391
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	2 cut(s)	146, 372
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	4 cut(s)	53, 56, 59, 288
BlsI	GCNGC	4 cut(s)	54, 57, 60, 289
Bme1390I	CCNGG	3 cut(s)	112, 176, 391
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	3 cut(s)	112, 176, 391
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	176, 391
BseGI	GGATG	2 cut(s)	61, 97
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	22
BseXI	GCAGC	4 cut(s)	45, 64, 67, 299
BsgI	GTGCAG	1 cut(s)	275
BshFI	GGCC	2 cut(s)	161, 282
BsiHKAI	GWGCWC	2 cut(s)	139, 348
BsiSI	CCGG	2 cut(s)	111, 158
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	161, 282
Bsp1286I	GDGCHC	2 cut(s)	139, 348
BspANI	GGCC	2 cut(s)	161, 282
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	395
BspMI	ACCTGC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	22
Bst2UI	CCWGG	2 cut(s)	176, 391
Bst6I	CTCTTC	1 cut(s)	174
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	61, 97
BstMAI	GTCTC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	2 cut(s)	176, 391
BstSCI	CCNGG	3 cut(s)	110, 174, 389
BstV1I	GCAGC	4 cut(s)	45, 64, 67, 299
BstV2I	GAAGAC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	161, 282
BtsCI	GGATG	2 cut(s)	61, 97
BveI	ACCTGC	1 cut(s)	247
CaiI	CAGNNNCTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	318
CviAII	CATG	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Ecl136II	GAGCTC	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	346
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	174, 389
EcoT38I	GRGCYC	1 cut(s)	348
FaeI	CATG	1 cut(s)	322
FaiI	YATR	8 cut(s)	6, 73, 78, 279, 320, 353, 401, 403
FatI	CATG	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	401
Fnu4HI	GCNGC	4 cut(s)	53, 56, 59, 288
FokI	GGATG	2 cut(s)	48, 104
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	4 cut(s)	53, 56, 59, 288
FspBI	CTAG	2 cut(s)	146, 372
GluI	GCNGC	4 cut(s)	53, 56, 59, 288
HaeIII	GGCC	2 cut(s)	161, 282
HapII	CCGG	2 cut(s)	111, 158
Hin1II	CATG	1 cut(s)	322
HpaII	CCGG	2 cut(s)	111, 158
HphI	GGTGA	1 cut(s)	319
Hpy188III	TCNNGA	2 cut(s)	29, 319
HpyAV	CCTTC	2 cut(s)	195, 325
HpyCH4V	TGCA	7 cut(s)	15, 61, 83, 256, 287, 419, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	322
LmnI	GCTCC	2 cut(s)	134, 393
Lsp1109I	GCAGC	4 cut(s)	45, 64, 67, 299
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	146, 372
MboII	GAAGA	5 cut(s)	191, 276, 311, 334, 447
MhlI	GDGCHC	2 cut(s)	139, 348
MluCI	AATT	3 cut(s)	7, 232, 410
MmeI	TCCRAC	3 cut(s)	89, 178, 241
MnlI	CCTC	3 cut(s)	27, 175, 449
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	2 cut(s)	111, 158
MspR9I	CCNGG	3 cut(s)	112, 176, 391
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	2 cut(s)	176, 391
MwoI	GCNNNNNNNGC	1 cut(s)	58
NciI	CCSGG	1 cut(s)	112
NdeI	CATATG	1 cut(s)	401
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	1 cut(s)	395
PagI	TCATGA	1 cut(s)	318
PctI	GAATGC	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	4 cut(s)	54, 57, 60, 289
Psp124BI	GAGCTC	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	174, 389
PspGI	CCWGG	2 cut(s)	174, 389
PspN4I	GGNNCC	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	4 cut(s)	53, 56, 59, 288
ScrFI	CCNGG	3 cut(s)	112, 176, 391
SduI	GDGCHC	2 cut(s)	139, 348
SetI	ASST	8 cut(s)	38, 60, 186, 196, 261, 271, 318, 348
SfaNI	GCATC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	7, 232, 410
SspMI	CTAG	2 cut(s)	146, 372
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	110, 174, 389
TasI	AATT	3 cut(s)	7, 232, 410
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseI	GCWGC	4 cut(s)	52, 55, 58, 287
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	147
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	1 cut(s)	410
XspI	CTAG	2 cut(s)	146, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.