Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010145

Physical Location & Seq

Genomic Coordinates Reverse (-)

65563084 .. 65565413

Gene Structure 2330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG463900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCATCTGAACCTGTAAATGTCAATGAATTCCAAGAATTGGCTAAGCAAGTCCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCAGTTCACGCTAAAAGAGAATGTTGAAGCATTTCGCAGAATCATATTAAGGCCTAGAGTTCTGGTAGATGTTAGCAGGATCGATATGTCAACCACTGTATTGGGTTACAAAATCTCAGCGCCGATAATGATTGCTCCTACTTCTATGCATCAGTTAGCACACCCTGAAGGAGAGGTGGCTACTGCTAGAGCTGCAGCTGCATCCAACACTATAATGGATGAAGGATCCAACTTGGAAGCTTTTGTCAGAGCGGTCTATGATGATTCTTTGTGCTGGGAGGTGCTTCAAGCTGTTGGAGGGAAAGTTCCTGTTCTTTTTGATGGAGGAATACGACGAGGAACTGATGTCTTCAAGGCATTAGCCCTCGGTGCACAAGCCGTCCTTGTTGGAAGGCCTGTTATCTATGGCCTTGCAGCAAATGGAGAAAATGGGGTGAGAAAGGTCATGAAGATGTTGAAGGATGAGTTAGAGCTCACTATGGCTCTCTCTGGCTGTCCTAGTGTTAAGGATATTACCAGGAGCCACGTGAGAACAGAATGTGGAAGACTCCGCTCCCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

220

Amino Acids

24.06

Weight (kDa)

6.33

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	15 - 105	3.3e-31	FMN-dependent dehydrogenase
FMN_dh	PF01070	126 - 210	3.1e-37	FMN-dependent dehydrogenase
IMPDH	PF00478	128 - 165	1.8e-06	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14150 AT3G14150 AT3G14150 AT3G14150 AT3G14150
malus_domestica	MD09G1177900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146491 RchiOBHm_Chr2g0146521
rosa_multiflora	Rmu_sc0001986.1_g000007 Rmu_sc0001986.1_g000010 Rmu_sc0005157.1_g000015
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451300 Rh2BG463800 Rh2BG463900 Rh2BG464000 Rh2BG464100 Rh2CG438100 Rh2CG438300 Rh2DG473200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccBSI	CCGCTC	2 cut(s)	350, 651
AciI	CCGC	2 cut(s)	350, 649
AclWI	GGATC	3 cut(s)	185, 318, 331
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	625
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	125, 386, 451, 556
AjnI	CCWGG	1 cut(s)	614
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	7 cut(s)	92, 290, 296, 338, 389, 571, 658
AluI	AGCT	7 cut(s)	92, 290, 296, 338, 389, 571, 658
Alw21I	GWGCWC	2 cut(s)	472, 573
Alw44I	GTGCAC	1 cut(s)	468
AlwI	GGATC	3 cut(s)	185, 318, 331
AoxI	GGCC	3 cut(s)	149, 491, 505
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	4 cut(s)	290, 293, 296, 512
ApoI	RAATTY	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	472
BamHI	GGATCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	573
BbrPI	CACGTG	1 cut(s)	625
BbsI	GAAGAC	2 cut(s)	439, 649
Bbv12I	GWGCWC	2 cut(s)	472, 573
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	277, 283, 305, 524
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	616
BfaI	CTAG	3 cut(s)	153, 285, 597
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	4 cut(s)	291, 294, 297, 513
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	4 cut(s)	292, 295, 298, 514
Bme1390I	CCNGG	1 cut(s)	616
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	325, 620
BmrFI	CCNGG	1 cut(s)	616
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	3 cut(s)	14, 256, 308
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	2 cut(s)	439, 649
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	625
BsaJI	CCNNGG	1 cut(s)	463
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	88, 100
BseBI	CCWGG	1 cut(s)	616
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	3 cut(s)	299, 322, 565
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	84, 228
BseNI	ACTGG	2 cut(s)	88, 100
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	4 cut(s)	277, 283, 305, 524
BseYI	CCCAGC	2 cut(s)	372, 654
BshFI	GGCC	3 cut(s)	151, 493, 507
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	472, 573
BslI	CCNNNNNNNGG	1 cut(s)	40
BsnI	GGCC	3 cut(s)	151, 493, 507
Bsp1286I	GDGCHC	2 cut(s)	472, 573
Bsp143I	GATC	2 cut(s)	177, 323
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	2 cut(s)	350, 649
BspANI	GGCC	3 cut(s)	151, 493, 507
BspCNI	CTCAG	2 cut(s)	85, 227
BspDI	ATCGAT	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	2 cut(s)	325, 620
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	3 cut(s)	185, 318, 331
BsrBI	CCGCTC	2 cut(s)	350, 651
BsrI	ACTGG	2 cut(s)	88, 100
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	2 cut(s)	177, 323
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	625
BstDEI	CTNAG	3 cut(s)	45, 93, 214
BstF5I	GGATG	3 cut(s)	299, 322, 565
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	180, 326
BstMBI	GATC	2 cut(s)	177, 323
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 296, 467
BstNI	CCWGG	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	614
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	4 cut(s)	277, 283, 305, 524
BstV2I	GAAGAC	2 cut(s)	439, 649
BstX2I	RGATCY	1 cut(s)	323
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	323
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	151, 493, 507
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	299, 322, 565
BtsIMutI	CAGTG	1 cut(s)	192
CciI	TCATGA	1 cut(s)	543
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	544
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	45, 93, 214
DpnI	GATC	2 cut(s)	179, 325
DpnII	GATC	2 cut(s)	177, 323
Ecl136II	GAGCTC	1 cut(s)	571
Eco147I	AGGCCT	2 cut(s)	151, 493
Eco24I	GRGCYC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	625
EcoICRI	GAGCTC	1 cut(s)	571
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	614
EcoT22I	ATGCAT	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	573
FaeI	CATG	1 cut(s)	547
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FatI	CATG	1 cut(s)	543
Fnu4HI	GCNGC	4 cut(s)	291, 294, 297, 513
FokI	GGATG	3 cut(s)	286, 329, 572
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	4 cut(s)	291, 294, 297, 513
FspBI	CTAG	3 cut(s)	153, 285, 597
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	4 cut(s)	291, 294, 297, 513
GsaI	CCCAGC	2 cut(s)	376, 658
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	3 cut(s)	151, 493, 507
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	547
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	3 cut(s)	138, 362, 645
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	3 cut(s)	105, 189, 470
Hpy188I	TCNGA	2 cut(s)	10, 347
Hpy188III	TCNNGA	1 cut(s)	544
Hpy8I	GTNNAC	3 cut(s)	105, 189, 470
Hpy99I	CGWCG	1 cut(s)	435
HpyAV	CCTTC	5 cut(s)	65, 260, 314, 483, 550
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	5 cut(s)	247, 293, 299, 470, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 296, 467
HpyF3I	CTNAG	3 cut(s)	45, 93, 214
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	1 cut(s)	547
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	177, 323
LmnI	GCTCC	4 cut(s)	89, 238, 618, 656
Lsp1109I	GCAGC	4 cut(s)	277, 283, 305, 524
LweI	GCATC	3 cut(s)	14, 256, 308
MaeI	CTAG	3 cut(s)	153, 285, 597
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	179, 325
MbiI	CCGCTC	2 cut(s)	350, 651
MboI	GATC	2 cut(s)	177, 323
MboII	GAAGA	3 cut(s)	439, 559, 654
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	2 cut(s)	472, 573
MluCI	AATT	2 cut(s)	29, 38
MlyI	GAGTC	1 cut(s)	639
MmeI	TCCRAC	4 cut(s)	327, 351, 373, 466
MnlI	CCTC	7 cut(s)	88, 265, 370, 389, 416, 428, 473
Mph1103I	ATGCAT	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	3 cut(s)	146, 603, 661
MslI	CAYNNNNRTG	2 cut(s)	311, 548
MspA1I	CMGCKG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	616
MvaI	CCWGG	1 cut(s)	616
MwoI	GCNNNNNNNGC	3 cut(s)	290, 296, 467
NdeII	GATC	2 cut(s)	177, 323
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	2 cut(s)	325, 620
NsiI	ATGCAT	1 cut(s)	249
PagI	TCATGA	1 cut(s)	543
PceI	AGGCCT	2 cut(s)	151, 493
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	138, 362
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	292, 295, 298, 514
PleI	GAGTC	1 cut(s)	639
PmaCI	CACGTG	1 cut(s)	625
PmlI	CACGTG	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	639
Ppu21I	YACGTR	1 cut(s)	625
Psp124BI	GAGCTC	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	614
PspCI	CACGTG	1 cut(s)	625
PspFI	CCCAGC	2 cut(s)	372, 654
PspGI	CCWGG	1 cut(s)	614
PspN4I	GGNNCC	2 cut(s)	325, 620
PspPI	GGNCC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	2 cut(s)	311, 548
SacI	GAGCTC	1 cut(s)	573
SaqAI	TTAA	3 cut(s)	146, 603, 661
SatI	GCNGC	4 cut(s)	291, 294, 297, 513
Sau3AI	GATC	2 cut(s)	177, 323
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	639
ScrFI	CCNGG	1 cut(s)	616
SduI	GDGCHC	2 cut(s)	472, 573
SfaNI	GCATC	3 cut(s)	14, 256, 308
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	2 cut(s)	311, 548
Sse9I	AATT	2 cut(s)	29, 38
SseBI	AGGCCT	2 cut(s)	151, 493
SsiI	CCGC	2 cut(s)	350, 649
SspMI	CTAG	3 cut(s)	153, 285, 597
SstI	GAGCTC	1 cut(s)	573
StuI	AGGCCT	2 cut(s)	151, 493
StyD4I	CCNGG	1 cut(s)	614
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	1 cut(s)	180
TasI	AATT	2 cut(s)	29, 38
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	138, 362
Tru1I	TTAA	3 cut(s)	146, 603, 661
Tru9I	TTAA	3 cut(s)	146, 603, 661
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	4 cut(s)	290, 293, 296, 512
TspDTI	ATGAA	3 cut(s)	42, 333, 560
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	468
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	3 cut(s)	153, 285, 597
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.