Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010145

Physical Location & Seq

Genomic Coordinates Reverse (-)

66525988 .. 66545286

Gene Structure 19299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG451300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCAGTTCACGCTAGAAGAGAATGTTGAAGCATTTCGCAGAATCATATTAAGGCCTAGAGTTTTGGTAGATGTTAGCAGGATTGATATGTCAACCACTGTATTGGGTTACAAAATCTCAGCACCGATAATGATTGCTCCTACTTCTATGCATCAGTTAGCACACCCTGAAGGAGAGGTGGCTACTGCTAGAGCTGCAGCTGCATCCAACACTATAATGATTTTGTCCTACTCTTCTACCTGCACTGTGGACGAGGTTGCTTTGAGCTGCAATGCTGTTCGGTTCTTTCAATTATATGTTTTCAAGAGACGAGATATATCGGCTCAGATAGTTCAAAGAGCTGAAAAAAATGGATACAAAGCTATTGTACTAACTGTCGATGCTCCCAGACTTGGTAGAAGAGAGGCAGACATAAAGAACAAAATGATTTCACCTCAGTTGAAAAACTTCGAAGGCCTAATATCAACTGAACTACTAGACTCTGATGAAGGATCCAACTTGGAAGCTGTTGCCAGAGCGACCTATGATGATTCTTTGTGCTGGGAGGTTGGAAGGCCTGTTATCTATGGCCTTGCAGCAAATGGAGAAGATGGGGTGAGAAAGGTCATGAAGATGTTGAAGGATGAGTTAGAGCTCACTATGGCTCTCTCTGGCTGTCCTAGTGTTAAGGATATTACCAGGAGCCACGTGAGAACAGAATGTGATAGACTCCGCTCCATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

252

Amino Acids

28.11

Weight (kDa)

5.75

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	2 - 192	3.7e-55	FMN-dependent dehydrogenase
FMN_dh	PF01070	194 - 242	4.3e-15	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14150 AT3G14150 AT3G14150 AT3G14150 AT3G14150
malus_domestica	MD09G1177900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146491 RchiOBHm_Chr2g0146521
rosa_multiflora	Rmu_sc0001986.1_g000007 Rmu_sc0001986.1_g000010 Rmu_sc0005157.1_g000015
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451300 Rh2BG463800 Rh2BG463900 Rh2BG464000 Rh2BG464100 Rh2CG438100 Rh2CG438300 Rh2DG473200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	747
AciI	CCGC	1 cut(s)	745
AclWI	GGATC	2 cut(s)	519, 532
AcuI	CTGAAG	1 cut(s)	222
AcvI	CACGTG	1 cut(s)	721
AfaI	GTAC	2 cut(s)	5, 402
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	6 cut(s)	62, 323, 337, 368, 475, 652
AjnI	CCWGG	1 cut(s)	710
AluBI	AGCT	8 cut(s)	29, 227, 233, 300, 374, 395, 539, 667
AluI	AGCT	8 cut(s)	29, 227, 233, 300, 374, 395, 539, 667
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	2 cut(s)	519, 532
AoxI	GGCC	4 cut(s)	86, 487, 587, 601
ApeKI	GCWGC	5 cut(s)	227, 230, 233, 300, 608
Asp700I	GAANNNNTTC	2 cut(s)	66, 479
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	456, 640
AsuII	TTCGAA	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	34
BamHI	GGATCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	669
BbrPI	CACGTG	1 cut(s)	721
Bbv12I	GWGCWC	1 cut(s)	669
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	5 cut(s)	214, 220, 242, 287, 620
BccI	CCATC	1 cut(s)	617
BciT130I	CCWGG	1 cut(s)	712
BciVI	GTATCC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	5 cut(s)	47, 90, 222, 509, 693
BfmI	CTRYAG	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	380
BisI	GCNGC	5 cut(s)	228, 231, 234, 301, 609
BlsI	GCNGC	5 cut(s)	229, 232, 235, 302, 610
Bme1390I	CCNGG	1 cut(s)	712
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	526, 716
BmrFI	CCNGG	1 cut(s)	712
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	3 cut(s)	193, 245, 403
BmuI	ACTGGG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	25, 37
Bse3DI	GCAATG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	712
BseGI	GGATG	2 cut(s)	236, 661
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	4 cut(s)	21, 165, 371, 482
BseNI	ACTGG	2 cut(s)	25, 37
BseXI	GCAGC	5 cut(s)	214, 220, 242, 287, 620
BseYI	CCCAGC	1 cut(s)	573
BsgI	GTGCAG	1 cut(s)	259
BshFI	GGCC	4 cut(s)	88, 489, 589, 603
BsiHKAI	GWGCWC	1 cut(s)	669
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	1 cut(s)	334
BsmBI	CGTCTC	1 cut(s)	334
BsnI	GGCC	4 cut(s)	88, 489, 589, 603
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp143I	GATC	1 cut(s)	524
BspACI	CCGC	1 cut(s)	745
BspANI	GGCC	4 cut(s)	88, 489, 589, 603
BspCNI	CTCAG	4 cut(s)	22, 164, 370, 481
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	2 cut(s)	526, 716
BspMAI	CTGCAG	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	2 cut(s)	519, 532
BspT104I	TTCGAA	1 cut(s)	483
BsrBI	CCGCTC	1 cut(s)	747
BsrDI	GCAATG	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	25, 37
BssMI	GATC	1 cut(s)	524
Bst2UI	CCWGG	1 cut(s)	712
Bst4CI	ACNGT	3 cut(s)	133, 280, 409
Bst6I	CTCTTC	3 cut(s)	45, 271, 427
BstBAI	YACGTR	1 cut(s)	721
BstBI	TTCGAA	1 cut(s)	483
BstDEI	CTNAG	4 cut(s)	30, 151, 357, 468
BstF5I	GGATG	2 cut(s)	236, 661
BstKTI	GATC	1 cut(s)	527
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	524
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 233
BstNI	CCWGG	1 cut(s)	712
BstSCI	CCNGG	1 cut(s)	710
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	5 cut(s)	214, 220, 242, 287, 620
BstX2I	RGATCY	1 cut(s)	524
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	524
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	4 cut(s)	88, 489, 589, 603
BtsCI	GGATG	2 cut(s)	236, 661
BtsIMutI	CAGTG	2 cut(s)	129, 276
BveI	ACCTGC	1 cut(s)	281
CciI	TCATGA	1 cut(s)	639
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	4, 401
CviAII	CATG	2 cut(s)	640, 751
CviQI	GTAC	2 cut(s)	4, 401
DdeI	CTNAG	4 cut(s)	30, 151, 357, 468
DpnI	GATC	1 cut(s)	526
DpnII	GATC	1 cut(s)	524
Eam1104I	CTCTTC	3 cut(s)	45, 271, 427
EarI	CTCTTC	3 cut(s)	45, 271, 427
Ecl136II	GAGCTC	1 cut(s)	667
Eco147I	AGGCCT	3 cut(s)	88, 489, 589
Eco24I	GRGCYC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	721
EcoICRI	GAGCTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	710
EcoT22I	ATGCAT	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	669
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	2 cut(s)	643, 754
FatI	CATG	2 cut(s)	639, 750
Fnu4HI	GCNGC	5 cut(s)	228, 231, 234, 301, 609
FokI	GGATG	2 cut(s)	223, 668
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	5 cut(s)	228, 231, 234, 301, 609
FspBI	CTAG	5 cut(s)	47, 90, 222, 509, 693
GluI	GCNGC	5 cut(s)	228, 231, 234, 301, 609
GsaI	CCCAGC	1 cut(s)	577
HaeIII	GGCC	4 cut(s)	88, 489, 589, 603
Hin1II	CATG	2 cut(s)	643, 754
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	4 cut(s)	75, 512, 563, 741
HphI	GGTGA	2 cut(s)	456, 640
Hpy166II	GTNNAC	3 cut(s)	42, 126, 283
Hpy188I	TCNGA	2 cut(s)	360, 517
Hpy188III	TCNNGA	2 cut(s)	337, 640
Hpy8I	GTNNAC	3 cut(s)	42, 126, 283
HpyAV	CCTTC	5 cut(s)	197, 479, 515, 579, 646
HpyCH4III	ACNGT	3 cut(s)	133, 280, 409
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	6 cut(s)	184, 230, 236, 276, 303, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 233
HpyF3I	CTNAG	4 cut(s)	30, 151, 357, 468
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	2 cut(s)	643, 754
Kzo9I	GATC	1 cut(s)	524
LmnI	GCTCC	5 cut(s)	26, 175, 421, 714, 752
Lsp1109I	GCAGC	5 cut(s)	214, 220, 242, 287, 620
LweI	GCATC	3 cut(s)	193, 245, 403
MaeI	CTAG	5 cut(s)	47, 90, 222, 509, 693
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	526
MbiI	CCGCTC	1 cut(s)	747
MboI	GATC	1 cut(s)	524
MboII	GAAGA	5 cut(s)	62, 258, 444, 632, 655
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	669
MluCI	AATT	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	506, 735
MmeI	TCCRAC	3 cut(s)	264, 552, 562
MnlI	CCTC	6 cut(s)	25, 202, 280, 430, 477, 571
Mph1103I	ATGCAT	1 cut(s)	186
MroXI	GAANNNNTTC	2 cut(s)	66, 479
MseI	TTAA	3 cut(s)	83, 699, 757
MslI	CAYNNNNRTG	2 cut(s)	248, 644
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	712
MwoI	GCNNNNNNNGC	2 cut(s)	227, 233
NdeII	GATC	1 cut(s)	524
NlaIII	CATG	2 cut(s)	643, 754
NlaIV	GGNNCC	2 cut(s)	526, 716
NsiI	ATGCAT	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	483
PagI	TCATGA	1 cut(s)	639
PceI	AGGCCT	3 cut(s)	88, 489, 589
PdmI	GAANNNNTTC	2 cut(s)	66, 479
PfeI	GAWTC	2 cut(s)	75, 563
PkrI	GCNGC	5 cut(s)	229, 232, 235, 302, 610
PleI	GAGTC	2 cut(s)	506, 735
PmaCI	CACGTG	1 cut(s)	721
PmlI	CACGTG	1 cut(s)	721
PpsI	GAGTC	2 cut(s)	506, 735
Ppu21I	YACGTR	1 cut(s)	721
Psp124BI	GAGCTC	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	710
PspCI	CACGTG	1 cut(s)	721
PspFI	CCCAGC	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	710
PspN4I	GGNNCC	2 cut(s)	526, 716
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	2 cut(s)	5, 402
RsaNI	GTAC	2 cut(s)	4, 401
RseI	CAYNNNNRTG	2 cut(s)	248, 644
SacI	GAGCTC	1 cut(s)	669
SaqAI	TTAA	3 cut(s)	83, 699, 757
SatI	GCNGC	5 cut(s)	228, 231, 234, 301, 609
Sau3AI	GATC	1 cut(s)	524
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	2 cut(s)	506, 735
ScrFI	CCNGG	1 cut(s)	712
SduI	GDGCHC	1 cut(s)	669
SfaNI	GCATC	3 cut(s)	193, 245, 403
SfcI	CTRYAG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	483
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	248, 644
Sse9I	AATT	1 cut(s)	323
SseBI	AGGCCT	3 cut(s)	88, 489, 589
SsiI	CCGC	1 cut(s)	745
SspMI	CTAG	5 cut(s)	47, 90, 222, 509, 693
SstI	GAGCTC	1 cut(s)	669
StuI	AGGCCT	3 cut(s)	88, 489, 589
StyD4I	CCNGG	1 cut(s)	710
TaaI	ACNGT	3 cut(s)	133, 280, 409
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	2 cut(s)	411, 483
TasI	AATT	1 cut(s)	323
TatI	WGTACW	2 cut(s)	3, 400
TfiI	GAWTC	2 cut(s)	75, 563
Tru1I	TTAA	3 cut(s)	83, 699, 757
Tru9I	TTAA	3 cut(s)	83, 699, 757
TscAI	CASTG	2 cut(s)	136, 283
TseI	GCWGC	5 cut(s)	227, 230, 233, 300, 608
TspDTI	ATGAA	2 cut(s)	534, 656
TspRI	CASTG	2 cut(s)	136, 283
VpaK11BI	GGWCC	1 cut(s)	34
XmnI	GAANNNNTTC	2 cut(s)	66, 479
XspI	CTAG	5 cut(s)	47, 90, 222, 509, 693
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.