Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001986.1

Orthogroup ID

OG0010145

Physical Location & Seq

Genomic Coordinates Reverse (-)

30261 .. 31681

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001986.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atggtgagttgtttccgcagaatggttgctcctcagttgaagaactttgaaggtctaatatcaactgcactagactctgatgaaggatccaacttggaagctgttgccagagcgacctatgatgattctttgtgctgggaggacgtaataggatggttaaaatctattacaaacttgccaattctagtcaagggtatactcactcatgaagatgcaagaaaggctgtggaagttggtgttgccgggattgtggtctctaatcatggagcgcgacaactaaactacactcctgccactatttctgtcctggaagaggtcattcaagctgttggagggaaagttcctgttctttttgatggaggaatacgacgaggaactgatgtcttcaaggcattagccctcggtgcacaagccgtccttgttggaaggcctgttatctatggccttgcagcaaatggagaagacggggtgagaaaggtgatgaagatgttgaaggatgagttagagctcactatggctctctctggctgtcctagtgttaaggatattaccaggagccacgtgagaacagaatgtgaaagactccgctccatgctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

199

Amino Acids

21.49

Weight (kDa)

6.32

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14150 AT3G14150 AT3G14150 AT3G14150 AT3G14150
malus_domestica	MD09G1177900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146491 RchiOBHm_Chr2g0146521
rosa_multiflora	Rmu_sc0001986.1_g000007 Rmu_sc0001986.1_g000010 Rmu_sc0005157.1_g000015
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451300 Rh2BG463800 Rh2BG463900 Rh2BG464000 Rh2BG464100 Rh2CG438100 Rh2CG438300 Rh2DG473200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	588
AccI	GTMKAC	1 cut(s)	196
AccII	CGCG	1 cut(s)	271
AciI	CCGC	2 cut(s)	16, 586
AclWI	GGATC	2 cut(s)	81, 94
AcvI	CACGTG	1 cut(s)	562
AfiI	CCNNNNNNNGG	2 cut(s)	22, 313
AgsI	TTSAA	5 cut(s)	40, 50, 323, 388, 493
AjnI	CCWGG	2 cut(s)	306, 551
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AluBI	AGCT	3 cut(s)	101, 326, 508
AluI	AGCT	3 cut(s)	101, 326, 508
Alw21I	GWGCWC	2 cut(s)	409, 510
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	2 cut(s)	81, 94
AoxI	GGCC	2 cut(s)	428, 442
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	16, 481, 490
BaeGI	GKGCMC	1 cut(s)	409
BamHI	GGATCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	510
BbrPI	CACGTG	1 cut(s)	562
BbsI	GAAGAC	2 cut(s)	376, 468
Bbv12I	GWGCWC	2 cut(s)	409, 510
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	2 cut(s)	147, 350
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	2 cut(s)	308, 553
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	3 cut(s)	71, 185, 534
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	244, 308, 553
BmiI	GGNNCC	2 cut(s)	88, 557
BmrFI	CCNGG	3 cut(s)	244, 308, 553
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	2 cut(s)	376, 468
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	562
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 313
BseBI	CCWGG	2 cut(s)	308, 553
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	2 cut(s)	158, 502
BseLI	CCNNNNNNNGG	2 cut(s)	22, 313
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	1 cut(s)	461
BseYI	CCCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	430, 444
BsiHKAI	GWGCWC	2 cut(s)	409, 510
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	22, 313
BsmAI	GTCTC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	430, 444
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	2 cut(s)	409, 510
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	2 cut(s)	16, 586
BspANI	GGCC	2 cut(s)	430, 444
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	88, 557
BspPI	GGATC	2 cut(s)	81, 94
BspTNI	GGTCTC	1 cut(s)	259
BsrBI	CCGCTC	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	1 cut(s)	86
BssNAI	GTATAC	1 cut(s)	197
Bst1107I	GTATAC	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	308, 553
Bst6I	CTCTTC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	33
BstENI	CCTNNNNNAGG	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	158, 502
BstFNI	CGCG	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 404
BstNI	CCWGG	2 cut(s)	308, 553
BstSCI	CCNGG	3 cut(s)	242, 306, 551
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	461
BstV2I	GAAGAC	2 cut(s)	376, 468
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BstZ17I	GTATAC	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	430, 444
BtsCI	GGATG	2 cut(s)	158, 502
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	271
CviAII	CATG	3 cut(s)	206, 263, 592
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	508
Eco147I	AGGCCT	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	508
Eco72I	CACGTG	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	508
EcoNI	CCTNNNNNAGG	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	306, 551
EcoT38I	GRGCYC	1 cut(s)	510
FaeI	CATG	3 cut(s)	209, 266, 595
FaiI	YATR	7 cut(s)	120, 197, 207, 264, 441, 515, 593
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FatI	CATG	3 cut(s)	205, 262, 591
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	2 cut(s)	165, 509
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	3 cut(s)	71, 185, 534
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	450
GsaI	CCCAGC	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	430, 444
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	3 cut(s)	209, 266, 595
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	3 cut(s)	74, 125, 582
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	3 cut(s)	16, 481, 490
Hpy166II	GTNNAC	2 cut(s)	197, 407
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	2 cut(s)	197, 407
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	4 cut(s)	44, 77, 420, 487
HpyCH4IV	ACGT	2 cut(s)	144, 561
HpyCH4V	TGCA	4 cut(s)	68, 215, 407, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 404
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	2 cut(s)	144, 561
Hsp92II	CATG	3 cut(s)	209, 266, 595
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	4 cut(s)	34, 266, 555, 593
Lsp1109I	GCAGC	1 cut(s)	461
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	3 cut(s)	71, 185, 534
MaeII	ACGT	2 cut(s)	144, 561
MalI	GATC	1 cut(s)	88
MbiI	CCGCTC	1 cut(s)	588
MboI	GATC	1 cut(s)	86
MboII	GAAGA	6 cut(s)	52, 221, 323, 376, 473, 496
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	409, 510
MluCI	AATT	1 cut(s)	180
MlyI	GAGTC	2 cut(s)	68, 576
MmeI	TCCRAC	3 cut(s)	114, 310, 403
MnlI	CCTC	7 cut(s)	42, 133, 307, 326, 353, 365, 410
MseI	TTAA	3 cut(s)	158, 540, 598
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	3 cut(s)	244, 308, 553
MvaI	CCWGG	2 cut(s)	308, 553
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	221, 404
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	3 cut(s)	209, 266, 595
NlaIV	GGNNCC	2 cut(s)	88, 557
PagI	TCATGA	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	2 cut(s)	68, 576
PmaCI	CACGTG	1 cut(s)	562
PmlI	CACGTG	1 cut(s)	562
PpsI	GAGTC	2 cut(s)	68, 576
Ppu21I	YACGTR	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	510
Psp6I	CCWGG	2 cut(s)	306, 551
PspCI	CACGTG	1 cut(s)	562
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	2 cut(s)	306, 551
PspN4I	GGNNCC	2 cut(s)	88, 557
PsuI	RGATCY	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	158, 540, 598
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	2 cut(s)	68, 576
ScrFI	CCNGG	3 cut(s)	244, 308, 553
SduI	GDGCHC	2 cut(s)	409, 510
SetI	ASST	9 cut(s)	55, 103, 119, 147, 318, 328, 480, 510, 564
SfaNI	GCATC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	1 cut(s)	180
SseBI	AGGCCT	1 cut(s)	430
SsiI	CCGC	2 cut(s)	16, 586
SspMI	CTAG	3 cut(s)	71, 185, 534
SstI	GAGCTC	1 cut(s)	510
StuI	AGGCCT	1 cut(s)	430
StyD4I	CCNGG	3 cut(s)	242, 306, 551
TaiI	ACGT	2 cut(s)	147, 564
TasI	AATT	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	3 cut(s)	158, 540, 598
Tru9I	TTAA	3 cut(s)	158, 540, 598
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	96, 222, 497
VneI	GTGCAC	1 cut(s)	405
XagI	CCTNNNNNAGG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	196
XspI	CTAG	3 cut(s)	71, 185, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.