Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005157.1

Orthogroup ID

OG0010145

Physical Location & Seq

Genomic Coordinates Forward (+)

44379 .. 45493

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005157.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggcatctgaacctgtaaatgtcaatgaattccaagaattggctaagcaagtccttccaaaaatgtactatgatttctatactgggggagctgaggaccagttcacgctaaaagagaatgttggaaggcctgttatctatggccttgcagcaaatggagaaaatggggtgagaaaggtcatgaagatgttgaaggatgagttagagctcactatggctctctctggctgtcctagtgttaaggatattaccaggagccacgtgagaacagaatgtggaagactccgctcccagctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004457 GO:0004460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0006082 GO:0006089 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009987 GO:0016491 GO:0016614 GO:0016898 GO:0016999 GO:0017000 GO:0017144 GO:0019752 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032787 GO:0042221 GO:0042742 GO:0042743 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050665 GO:0050896 GO:0051186 GO:0051188 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0071704 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:1901615 GO:1903409 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

99

Amino Acids

11.11

Weight (kDa)

6.57

Isoelectric Point (pI)

57.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14150 AT3G14150 AT3G14150 AT3G14150 AT3G14150
malus_domestica	MD09G1177900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146491 RchiOBHm_Chr2g0146521
rosa_multiflora	Rmu_sc0001986.1_g000007 Rmu_sc0001986.1_g000010 Rmu_sc0005157.1_g000015
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451300 Rh2BG463800 Rh2BG463900 Rh2BG464000 Rh2BG464100 Rh2CG438100 Rh2CG438300 Rh2DG473200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	288
AciI	CCGC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	29
AcvI	CACGTG	1 cut(s)	262
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	251
AluBI	AGCT	3 cut(s)	92, 208, 295
AluI	AGCT	3 cut(s)	92, 208, 295
Alw21I	GWGCWC	1 cut(s)	210
AoxI	GGCC	2 cut(s)	128, 142
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	210
BbrPI	CACGTG	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	253
BfaI	CTAG	1 cut(s)	234
BisI	GCNGC	1 cut(s)	150
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	253
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	88, 100
BseBI	CCWGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	88, 100
BseXI	GCAGC	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	291
BshFI	GGCC	2 cut(s)	130, 144
BsiHKAI	GWGCWC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	40
BsnI	GGCC	2 cut(s)	130, 144
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	130, 144
BspCNI	CTCAG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	88, 100
Bst2UI	CCWGG	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	45, 93
BstF5I	GGATG	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	130, 144
BtsCI	GGATG	1 cut(s)	202
CciI	TCATGA	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	9 cut(s)	44, 92, 130, 144, 208, 218, 228, 258, 295
CviKI_1	RGCY	9 cut(s)	44, 92, 130, 144, 208, 218, 228, 258, 295
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	45, 93
Ecl136II	GAGCTC	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	208
Eco72I	CACGTG	1 cut(s)	262
EcoICRI	GAGCTC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	1 cut(s)	184
FaiI	YATR	5 cut(s)	72, 81, 141, 182, 215
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	1 cut(s)	150
GsaI	CCCAGC	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	130, 144
Hin1II	CATG	1 cut(s)	184
HinfI	GANTC	1 cut(s)	282
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	3 cut(s)	65, 120, 187
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	45, 93
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	184
LmnI	GCTCC	3 cut(s)	89, 255, 293
LpnPI	CCDG	7 cut(s)	27, 69, 113, 144, 210, 238, 265
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	261
MbiI	CCGCTC	1 cut(s)	288
MboII	GAAGA	2 cut(s)	196, 291
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	2 cut(s)	29, 38
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	1 cut(s)	88
MseI	TTAA	2 cut(s)	240, 298
MslI	CAYNNNNRTG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	253
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	130
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	276
PmaCI	CACGTG	1 cut(s)	262
PmlI	CACGTG	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	276
Ppu21I	YACGTR	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	97
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	240, 298
SatI	GCNGC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	6 cut(s)	16, 94, 180, 210, 264, 297
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	29, 38
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	210
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	251
TaiI	ACGT	1 cut(s)	264
TasI	AATT	2 cut(s)	29, 38
TatI	WGTACW	1 cut(s)	66
Tru1I	TTAA	2 cut(s)	240, 298
Tru9I	TTAA	2 cut(s)	240, 298
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	42, 197
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	29
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.