Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010145

Physical Location & Seq

Genomic Coordinates Reverse (-)

59499776 .. 59501192

Gene Structure 1417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG438100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGTGAGTTGTTTCCACAGAATGGTTGCTCCTCAGTTGAAGAACTTTGAAGGTCTAATATCAACTGCACTAGACTCTGATGAAGGATCCAACTTGGAAGCTGTTGCCAGAGCGACCTATGATGATTCTTTGTGCTGGGAGGTTGGAAGGCCTGTTATCTATGGCCTTGCAGCAAATGGAGAAGATGGGGTGAGAAAGGTCATGAAGATGTTGAAGGATGAGTTAGAGCTCACTATGGCTCTCTCTGGCTGTCCTAGTGTTAAGGATATTACCAGGAGCCACGTGAGAACAGAATGTGATAGACTCCGCTCCATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

106

Amino Acids

11.75

Weight (kDa)

5.32

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	48 - 96	6.6e-16	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14150 AT3G14150 AT3G14150 AT3G14150 AT3G14150
malus_domestica	MD09G1177900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146491 RchiOBHm_Chr2g0146521
rosa_multiflora	Rmu_sc0001986.1_g000007 Rmu_sc0001986.1_g000010 Rmu_sc0005157.1_g000015
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451300 Rh2BG463800 Rh2BG463900 Rh2BG464000 Rh2BG464100 Rh2CG438100 Rh2CG438300 Rh2DG473200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccBSI	CCGCTC	1 cut(s)	309
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	2 cut(s)	81, 94
AcvI	CACGTG	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	40, 50, 214
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	2 cut(s)	101, 229
AluI	AGCT	2 cut(s)	101, 229
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	81, 94
AoxI	GGCC	2 cut(s)	149, 163
ApeKI	GCWGC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	16, 202
BamHI	GGATCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	231
BbrPI	CACGTG	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	274
BfaI	CTAG	2 cut(s)	71, 255
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	88, 278
BmrFI	CCNGG	1 cut(s)	274
BsaAI	YACGTR	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	182
BseYI	CCCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	151, 165
BsiHKAI	GWGCWC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	2 cut(s)	151, 165
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	307
BspANI	GGCC	2 cut(s)	151, 165
BspCNI	CTCAG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	88, 278
BspPI	GGATC	2 cut(s)	81, 94
BsrBI	CCGCTC	1 cut(s)	309
BssMI	GATC	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	274
BstBAI	YACGTR	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	151, 165
BtsCI	GGATG	1 cut(s)	223
CciI	TCATGA	1 cut(s)	201
CviAII	CATG	2 cut(s)	202, 313
CviJI	RGCY	7 cut(s)	101, 151, 165, 229, 239, 249, 279
CviKI_1	RGCY	7 cut(s)	101, 151, 165, 229, 239, 249, 279
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	229
Eco147I	AGGCCT	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco72I	CACGTG	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	2 cut(s)	205, 316
FaiI	YATR	5 cut(s)	120, 162, 203, 236, 314
FatI	CATG	2 cut(s)	201, 312
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	71, 255
GluI	GCNGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	151, 165
Hin1II	CATG	2 cut(s)	205, 316
HinfI	GANTC	3 cut(s)	74, 125, 303
HphI	GGTGA	2 cut(s)	16, 202
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	202
HpyAV	CCTTC	4 cut(s)	44, 77, 141, 208
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	68, 170
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	205, 316
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	3 cut(s)	34, 276, 314
LpnPI	CCDG	6 cut(s)	121, 121, 165, 231, 259, 286
Lsp1109I	GCAGC	1 cut(s)	182
MaeI	CTAG	2 cut(s)	71, 255
MaeII	ACGT	1 cut(s)	282
MalI	GATC	1 cut(s)	88
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	1 cut(s)	86
MboII	GAAGA	3 cut(s)	52, 194, 217
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	68, 297
MmeI	TCCRAC	2 cut(s)	114, 124
MnlI	CCTC	2 cut(s)	42, 133
MseI	TTAA	2 cut(s)	261, 319
MslI	CAYNNNNRTG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	2 cut(s)	205, 316
NlaIV	GGNNCC	2 cut(s)	88, 278
PagI	TCATGA	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	2 cut(s)	68, 297
PmaCI	CACGTG	1 cut(s)	283
PmlI	CACGTG	1 cut(s)	283
PpsI	GAGTC	2 cut(s)	68, 297
Ppu21I	YACGTR	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	272
PspCI	CACGTG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	88, 278
PsuI	RGATCY	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	261, 319
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	2 cut(s)	68, 297
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	7 cut(s)	55, 103, 119, 144, 201, 231, 285
SmiMI	CAYNNNNRTG	1 cut(s)	206
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	1 cut(s)	307
SspMI	CTAG	2 cut(s)	71, 255
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	272
TaiI	ACGT	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	261, 319
Tru9I	TTAA	2 cut(s)	261, 319
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	96, 218
Van91I	CCANNNNNTGG	1 cut(s)	22
XspI	CTAG	2 cut(s)	71, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.