Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001986.1

Orthogroup ID

OG0010145

Physical Location & Seq

Genomic Coordinates Reverse (-)

45687 .. 48113

Gene Structure 2427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001986.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgaggagagaaagaaggtggcggggggtagtgcaagataggcagcagcttcgggcaggttacaggcagctgcaaggagcgagtaggcgggctggtgcgtggtcgggttgcaggcgggtgcgcaaaagcagcagcgggtggcggcgtctgggtgcgggggcgctgtgcagaaggcagggcagcgacgcaggagggcgtctgtgcagcgtgggctgctggtgtggtggcggtggcaagcagaaagcttgcgggtttgtggctgcaggggaggaggccgggttcgcaattggggggaggcgaggccgagtgtgctcgggctggtgcaggtgggtgcgcaaagtggcggttctgggcgcgggggcactggggaggaggccggataacgctggtgcgttgcagagggggggttgctgctcggtggcctgggctgctgctgcagatgaaggatccaacttggaagcttttgtcagagcggtctatgatgattctttgtgctgggaggtgcttcaagctgttggagggaaagttcctgttctttttgatggaggaatacgacgaggaactgatgtcttcaaggcattagccctcggtgcacaagccgtccttgttggaaggcctgttatctatggccttgcagcaaatggagaagacggggtgagaaaggtcatgaagatgttgaaggatgagttagagctcactatggctctctctggctgtcctagtgttaaggatattaccaggagccacgtgagaacagaatgtggaagactccgctcccagctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

261

Amino Acids

27.88

Weight (kDa)

10.44

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14150 AT3G14150 AT3G14150 AT3G14150 AT3G14150
malus_domestica	MD09G1177900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146491 RchiOBHm_Chr2g0146521
rosa_multiflora	Rmu_sc0001986.1_g000007 Rmu_sc0001986.1_g000010 Rmu_sc0005157.1_g000015
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451300 Rh2BG463800 Rh2BG463900 Rh2BG464000 Rh2BG464100 Rh2CG438100 Rh2CG438300 Rh2DG473200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	315
Acc16I	TGCGCA	2 cut(s)	122, 335
Acc36I	ACCTGC	2 cut(s)	47, 315
AccBSI	CCGCTC	2 cut(s)	473, 774
AccII	CGCG	1 cut(s)	356
AclWI	GGATC	2 cut(s)	441, 454
AcvI	CACGTG	1 cut(s)	748
AcyI	GRCGYC	2 cut(s)	145, 196
AgsI	TTSAA	3 cut(s)	509, 574, 679
AjnI	CCWGG	2 cut(s)	422, 737
AloI	GAACNNNNNNTCC	4 cut(s)	263, 295, 510, 542
AluBI	AGCT	7 cut(s)	49, 70, 245, 461, 512, 694, 781
AluI	AGCT	7 cut(s)	49, 70, 245, 461, 512, 694, 781
Alw21I	GWGCWC	3 cut(s)	314, 595, 696
Alw44I	GTGCAC	1 cut(s)	591
AlwI	GGATC	2 cut(s)	441, 454
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	6 cut(s)	273, 301, 374, 420, 614, 628
ApaLI	GTGCAC	1 cut(s)	591
AspLEI	GCGC	4 cut(s)	123, 163, 336, 356
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	667
AvaI	CYCGRG	1 cut(s)	313
BaeGI	GKGCMC	2 cut(s)	364, 595
BamHI	GGATCC	1 cut(s)	446
BanII	GRGCYC	1 cut(s)	696
BbrPI	CACGTG	1 cut(s)	748
BbsI	GAAGAC	3 cut(s)	562, 654, 772
Bbv12I	GWGCWC	3 cut(s)	314, 595, 696
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	1 cut(s)	584
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	2 cut(s)	424, 739
BcnI	CCSGG	1 cut(s)	277
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	2 cut(s)	261, 435
BfoI	RGCGCY	1 cut(s)	164
BfuAI	ACCTGC	2 cut(s)	47, 315
Bme1390I	CCNGG	3 cut(s)	277, 424, 739
BmeT110I	CYCGRG	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	448, 743
BmrFI	CCNGG	3 cut(s)	277, 424, 739
BmrI	ACTGGG	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	3 cut(s)	562, 654, 772
BpuMI	CCSGG	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	748
BsaHI	GRCGYC	2 cut(s)	145, 196
BsaJI	CCNNGG	2 cut(s)	423, 586
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 510, 540
Bse1I	ACTGG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	424, 739
BseDI	CCNNGG	2 cut(s)	423, 586
BseGI	GGATG	1 cut(s)	688
BseNI	ACTGG	1 cut(s)	369
BseRI	GAGGAG	3 cut(s)	19, 284, 385
BseSI	GKGCMC	2 cut(s)	364, 595
BseYI	CCCAGC	2 cut(s)	495, 777
BsgI	GTGCAG	3 cut(s)	187, 223, 343
Bsh1236I	CGCG	1 cut(s)	356
BshFI	GGCC	6 cut(s)	275, 303, 376, 422, 616, 630
BsiHKAI	GWGCWC	3 cut(s)	314, 595, 696
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	276, 377
BsnI	GGCC	6 cut(s)	275, 303, 376, 422, 616, 630
BsoBI	CYCGRG	1 cut(s)	313
Bsp1286I	GDGCHC	4 cut(s)	314, 364, 595, 696
Bsp143I	GATC	1 cut(s)	446
BspANI	GGCC	6 cut(s)	275, 303, 376, 422, 616, 630
BspFNI	CGCG	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	2 cut(s)	448, 743
BspMAI	CTGCAG	2 cut(s)	265, 439
BspMI	ACCTGC	2 cut(s)	47, 315
BspPI	GGATC	2 cut(s)	441, 454
BsrBI	CCGCTC	2 cut(s)	473, 774
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	2 cut(s)	423, 586
BssMI	GATC	1 cut(s)	446
BssNI	GRCGYC	2 cut(s)	145, 196
Bst2UI	CCWGG	2 cut(s)	424, 739
BstACI	GRCGYC	2 cut(s)	145, 196
BstBAI	YACGTR	1 cut(s)	748
BstC8I	GCNNGC	4 cut(s)	90, 113, 236, 247
BstF5I	GGATG	1 cut(s)	688
BstFNI	CGCG	1 cut(s)	356
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	4 cut(s)	123, 163, 336, 356
BstKTI	GATC	1 cut(s)	449
BstMBI	GATC	1 cut(s)	446
BstMWI	GCNNNNNNNGC	9 cut(s)	40, 129, 210, 213, 281, 309, 428, 434, 590
BstNI	CCWGG	2 cut(s)	424, 739
BstSCI	CCNGG	3 cut(s)	275, 422, 737
BstSFI	CTRYAG	2 cut(s)	261, 435
BstSLI	GKGCMC	2 cut(s)	364, 595
BstUI	CGCG	1 cut(s)	356
BstV2I	GAAGAC	3 cut(s)	562, 654, 772
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	6 cut(s)	275, 303, 376, 422, 616, 630
BtsCI	GGATG	1 cut(s)	688
BtsIMutI	CAGTG	1 cut(s)	362
BveI	ACCTGC	2 cut(s)	47, 315
Cac8I	GCNNGC	4 cut(s)	90, 113, 236, 247
CciI	TCATGA	1 cut(s)	666
CfoI	GCGC	4 cut(s)	123, 163, 336, 356
CseI	GACGC	3 cut(s)	134, 185, 194
CviAII	CATG	1 cut(s)	667
DpnI	GATC	1 cut(s)	448
DpnII	GATC	1 cut(s)	446
Ecl136II	GAGCTC	1 cut(s)	694
Eco147I	AGGCCT	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	696
Eco53kI	GAGCTC	1 cut(s)	694
Eco72I	CACGTG	1 cut(s)	748
Eco88I	CYCGRG	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	694
EcoRII	CCWGG	2 cut(s)	422, 737
EcoT38I	GRGCYC	1 cut(s)	696
FaeI	CATG	1 cut(s)	670
FaiI	YATR	4 cut(s)	480, 627, 668, 701
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FatI	CATG	1 cut(s)	666
FauI	CCCGC	7 cut(s)	15, 81, 108, 128, 148, 242, 349
FokI	GGATG	1 cut(s)	695
FriOI	GRGCYC	1 cut(s)	696
FspBI	CTAG	1 cut(s)	720
FspI	TGCGCA	2 cut(s)	122, 335
GlaI	GCGC	4 cut(s)	122, 162, 335, 355
GsaI	CCCAGC	2 cut(s)	499, 781
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	6 cut(s)	275, 303, 376, 422, 616, 630
HapII	CCGG	2 cut(s)	276, 377
HgaI	GACGC	3 cut(s)	134, 185, 194
HhaI	GCGC	4 cut(s)	123, 163, 336, 356
Hin1I	GRCGYC	2 cut(s)	145, 196
Hin1II	CATG	1 cut(s)	670
Hin6I	GCGC	4 cut(s)	121, 161, 334, 354
HinP1I	GCGC	4 cut(s)	121, 161, 334, 354
HindIII	AAGCTT	2 cut(s)	243, 459
HinfI	GANTC	2 cut(s)	485, 768
HpaII	CCGG	2 cut(s)	276, 377
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	1 cut(s)	470
Hpy188III	TCNNGA	1 cut(s)	667
Hpy8I	GTNNAC	1 cut(s)	593
Hpy99I	CGWCG	2 cut(s)	188, 558
HpyAV	CCTTC	5 cut(s)	9, 165, 437, 606, 673
HpyCH4IV	ACGT	1 cut(s)	747
HpyF10VI	GCNNNNNNNGC	9 cut(s)	40, 129, 210, 213, 281, 309, 428, 434, 590
HpySE526I	ACGT	1 cut(s)	747
Hsp92I	GRCGYC	2 cut(s)	145, 196
Hsp92II	CATG	1 cut(s)	670
HspAI	GCGC	4 cut(s)	121, 161, 334, 354
Kzo9I	GATC	1 cut(s)	446
LmnI	GCTCC	3 cut(s)	77, 741, 779
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	448
MbiI	CCGCTC	2 cut(s)	473, 774
MboI	GATC	1 cut(s)	446
MboII	GAAGA	4 cut(s)	562, 659, 682, 777
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	446
MhlI	GDGCHC	4 cut(s)	314, 364, 595, 696
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	762
MmeI	TCCRAC	3 cut(s)	474, 496, 589
MseI	TTAA	2 cut(s)	726, 784
MslI	CAYNNNNRTG	1 cut(s)	671
MspA1I	CMGCKG	2 cut(s)	70, 135
MspI	CCGG	2 cut(s)	276, 377
MspR9I	CCNGG	3 cut(s)	277, 424, 739
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	424, 739
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	9 cut(s)	40, 129, 210, 213, 281, 309, 428, 434, 590
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	446
NlaIII	CATG	1 cut(s)	670
NlaIV	GGNNCC	2 cut(s)	448, 743
NmeAIII	GCCGAG	1 cut(s)	329
NsbI	TGCGCA	2 cut(s)	122, 335
PagI	TCATGA	1 cut(s)	666
PaqCI	CACCTGC	1 cut(s)	315
PceI	AGGCCT	1 cut(s)	616
PfeI	GAWTC	1 cut(s)	485
PleI	GAGTC	1 cut(s)	762
PmaCI	CACGTG	1 cut(s)	748
PmlI	CACGTG	1 cut(s)	748
PpsI	GAGTC	1 cut(s)	762
Ppu21I	YACGTR	1 cut(s)	748
Psp124BI	GAGCTC	1 cut(s)	696
Psp6I	CCWGG	2 cut(s)	422, 737
PspCI	CACGTG	1 cut(s)	748
PspFI	CCCAGC	2 cut(s)	495, 777
PspGI	CCWGG	2 cut(s)	422, 737
PspN4I	GGNNCC	2 cut(s)	448, 743
PstI	CTGCAG	2 cut(s)	265, 439
PsuI	RGATCY	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	726, 784
Sau3AI	GATC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	3 cut(s)	277, 424, 739
SduI	GDGCHC	4 cut(s)	314, 364, 595, 696
SfcI	CTRYAG	2 cut(s)	261, 435
SmiMI	CAYNNNNRTG	1 cut(s)	671
Sse9I	AATT	1 cut(s)	285
SseBI	AGGCCT	1 cut(s)	616
SspMI	CTAG	1 cut(s)	720
SstI	GAGCTC	1 cut(s)	696
StuI	AGGCCT	1 cut(s)	616
StyD4I	CCNGG	3 cut(s)	275, 422, 737
TaiI	ACGT	1 cut(s)	750
TasI	AATT	1 cut(s)	285
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	2 cut(s)	726, 784
Tru9I	TTAA	2 cut(s)	726, 784
TscAI	CASTG	1 cut(s)	369
TspDTI	ATGAA	2 cut(s)	456, 683
TspRI	CASTG	1 cut(s)	369
VneI	GTGCAC	1 cut(s)	591
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.