Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004706

Physical Location & Seq

Genomic Coordinates Reverse (-)

4685646 .. 4688309

Gene Structure 2664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14130.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGATCAAATCGTTAACGTGGATGAGTTTCAAGAGCTGGCCAAACAGGCCCTCCCTAAGATGTACTATGATTTCTACAATGGAGGAGCAGAGGATCAACACACTCTCAATGAAAATGTCCAAGCTTTCCGTAGAATCATGTTTAGGCCTAGGGTTCTTGTTGATGTGAGCAACATAGATATGTCTACAAGTATGTTGGGTTACCCAATCTCAGCTCCCATCATGATTGCTCCAACAGCAATGCATAAGTTGGCTCATCCTAAAGGAGAAATCGCCACAGCGAAAGCTGCAGCTGCGTGTAACACTATCATGATAGTATCATTCATGTCTACTTGCACTATTGAGGAGGTTGCTTCCAGTTGTAACGCTGTTCGGTTTCTTCAAATATATGTGTACAAGAGACGTGATGTAACAGCTCAGATTGTGAAAAGAGCTGAAAAAGCTGGATTCAAGGCTATAGTTCTAACTGTTGATGTTCCCAGACTTGGTAGAAGGGAAGCAGATATAAAGAACAAAATGATATCCCCACAGCTGAAGAATTTTGAAGGCTTAGTTTCAACCGAAGTCCGACCTAATGAAGGTTCAGGGGTTGAAGCCTTTGCCTCTAGTGCATTTGATGCTTCGTTAAGCTGGAAGGATATCGAATGGTTAAGATCTATTACAAAGTTGCCAATTCTGGTCAAAGGGTTACTCACACGTGAAGACGCTCTTAAGGCTGTTGAAGCCGGTGTAGATGGAATAGTGGTATCCAACCACGGGGCTCGCCAGCTCGACTATTCCCCGGCTACGATAACTGTTTTAGAAGAGGTTGTTCATGCTGTGAAAGGTAGGATTCCGGTTTTGCTTGATGGAGGAGTAAGACGAGGAACAGATGTTTTCAAAGCGCTGGCGCTCGGAGCACAAGCTGTTCTTATAGGGAGGCCTATAGTCTATGGGCTTGCAGCTAAGGGTGAAGATGGAGTGAAAAAAGTGATTGATATGCTGAAAAATGAGTTTGAGATTACTATGGCCCTTTCTGGCTGTCCAACCATTGATGACGTAACCAGAAACCATGTTAGGACAGAGAATGAGAGAATTAAATCTATGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

363

Amino Acids

39.88

Weight (kDa)

8.23

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	2 - 309	8.5e-126	FMN-dependent dehydrogenase
IMPDH	PF00478	186 - 264	1.1e-06	IMP dehydrogenase / GMP reductase domain
NMO	PF03060	189 - 296	5e-07	Nitronate monooxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14130 AT3G14130 AT3G14150 AT3G14150
fragaria_vesca	FvH4_6g35190 FvH4_6g35192
malus_domestica	MD09G1177800.v1.1 MD17G1148900.v1.1
prunus_persica	Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1
pyrus_communis	pycom09g09620 pycom17g14260
rosa_chinensis	RchiOBHm_Chr2g0146451 RchiOBHm_Chr2g0146471 RchiOBHm_Chr2g0146501
rosa_laevigata	RLG00000020202 RLG00000020203
rosa_multiflora	Rmu_co8466583.1_g000001 Rmu_sc0001986.1_g000011 Rmu_sc0024495.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100070 Rroxscaffold_2G00100080
rosa_rugosa	Rorug02G0394600
rosa_samantha	Rh2DG472800 Rh2DG472900
rosa_wichuraiana	Rw2G036840 Rw2G036850 Rw2G036860 Rw2G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	185, 329
AclWI	GGATC	2 cut(s)	12, 102
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	554
AcvI	CACGTG	1 cut(s)	698
AfaI	GTAC	2 cut(s)	65, 395
AfeI	AGCGCT	1 cut(s)	885
AfiI	CCNNNNNNNGG	3 cut(s)	485, 578, 756
AflII	CTTAAG	1 cut(s)	710
AflIII	ACRYGT	1 cut(s)	695
AgsI	TTSAA	8 cut(s)	32, 383, 451, 545, 558, 593, 722, 880
AjiI	CACGTC	1 cut(s)	404
Alw21I	GWGCWC	1 cut(s)	901
Alw26I	GTCTC	1 cut(s)	394
AlwI	GGATC	2 cut(s)	12, 102
Aor51HI	AGCGCT	1 cut(s)	885
AoxI	GGCC	5 cut(s)	39, 48, 146, 920, 1008
ApeKI	GCWGC	4 cut(s)	287, 290, 293, 941
ApoI	RAATTY	1 cut(s)	538
AspA2I	CCTAGG	1 cut(s)	149
AspLEI	GCGC	2 cut(s)	886, 892
AspS9I	GGNCC	2 cut(s)	49, 1009
AsuC2I	CCSGG	1 cut(s)	782
AsuHPI	GGTGA	1 cut(s)	962
AvrII	CCTAGG	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	763
BbrPI	CACGTG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	901
BbvI	GCAGC	4 cut(s)	274, 280, 302, 953
BccI	CCATC	4 cut(s)	227, 728, 842, 950
BciVI	GTATCC	1 cut(s)	757
BcnI	CCSGG	1 cut(s)	782
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	2 cut(s)	150, 606
BfmI	CTRYAG	3 cut(s)	288, 456, 924
BfoI	RGCGCY	2 cut(s)	887, 893
BfrI	CTTAAG	1 cut(s)	710
BfuI	GTATCC	1 cut(s)	757
BglI	GCCNNNNNGGC	1 cut(s)	47
BglII	AGATCT	1 cut(s)	653
BisI	GCNGC	4 cut(s)	288, 291, 294, 942
BlnI	CCTAGG	1 cut(s)	149
BlsI	GCNGC	4 cut(s)	289, 292, 295, 943
Bme1390I	CCNGG	1 cut(s)	782
BmgBI	CACGTC	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	49, 1009
BmrFI	CCNGG	1 cut(s)	782
BmsI	GCATC	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	708
Bpu10I	CCTNAGC	1 cut(s)	945
BpuMI	CCSGG	1 cut(s)	782
BsaAI	YACGTR	1 cut(s)	698
BsaJI	CCNNGG	3 cut(s)	149, 754, 780
BsaWI	WCCGGW	1 cut(s)	835
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	3 cut(s)	485, 578, 756
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	246
BseDI	CCNNGG	3 cut(s)	149, 754, 780
BseGI	GGATG	2 cut(s)	28, 256
BseLI	CCNNNNNNNGG	3 cut(s)	485, 578, 756
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	225, 431
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	3 cut(s)	99, 359, 867
BseXI	GCAGC	4 cut(s)	274, 280, 302, 953
BshFI	GGCC	5 cut(s)	41, 50, 148, 922, 1010
BsiHKAI	GWGCWC	1 cut(s)	901
BsiSI	CCGG	3 cut(s)	726, 782, 836
BslI	CCNNNNNNNGG	3 cut(s)	485, 578, 756
BsmAI	GTCTC	1 cut(s)	394
BsmBI	CGTCTC	1 cut(s)	394
BsnI	GGCC	5 cut(s)	41, 50, 148, 922, 1010
Bsp1286I	GDGCHC	2 cut(s)	763, 901
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	4, 94, 653
BspANI	GGCC	5 cut(s)	41, 50, 148, 922, 1010
BspCNI	CTCAG	2 cut(s)	224, 430
BspHI	TCATGA	2 cut(s)	222, 309
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	2 cut(s)	12, 102
BspTI	CTTAAG	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	725
BsrGI	TGTACA	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	725
BssECI	CCNNGG	3 cut(s)	149, 754, 780
BssMI	GATC	3 cut(s)	4, 94, 653
BssT1I	CCWWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	469, 796
Bst6I	CTCTTC	1 cut(s)	798
BstAFI	CTTAAG	1 cut(s)	710
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstAUI	TGTACA	1 cut(s)	393
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	5 cut(s)	39, 763, 767, 888, 939
BstDEI	CTNAG	5 cut(s)	57, 211, 417, 550, 945
BstDSI	CCRYGG	1 cut(s)	754
BstEII	GGTNACC	1 cut(s)	200
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	2 cut(s)	28, 256
BstH2I	RGCGCY	2 cut(s)	887, 893
BstHHI	GCGC	2 cut(s)	886, 892
BstKTI	GATC	3 cut(s)	7, 97, 656
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	3 cut(s)	4, 94, 653
BstPI	GGTNACC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	780
BstSFI	CTRYAG	3 cut(s)	288, 456, 924
BstV1I	GCAGC	4 cut(s)	274, 280, 302, 953
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	1 cut(s)	653
BstYI	RGATCY	1 cut(s)	653
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	5 cut(s)	41, 50, 148, 922, 1010
BtgI	CCRYGG	1 cut(s)	754
BtrI	CACGTC	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	28, 256
Cac8I	GCNNGC	5 cut(s)	39, 763, 767, 888, 939
CciI	TCATGA	2 cut(s)	222, 309
CfoI	GCGC	2 cut(s)	886, 892
Cfr10I	RCCGGY	1 cut(s)	725
Cfr13I	GGNCC	2 cut(s)	49, 1009
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	2 cut(s)	64, 394
CviAII	CATG	6 cut(s)	139, 223, 310, 325, 815, 1052
CviQI	GTAC	2 cut(s)	64, 394
DdeI	CTNAG	5 cut(s)	57, 211, 417, 550, 945
DpnI	GATC	3 cut(s)	6, 96, 655
DpnII	GATC	3 cut(s)	4, 94, 653
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Eco130I	CCWWGG	1 cut(s)	149
Eco147I	AGGCCT	2 cut(s)	148, 922
Eco24I	GRGCYC	1 cut(s)	763
Eco32I	GATATC	2 cut(s)	522, 640
Eco47III	AGCGCT	1 cut(s)	885
Eco57I	CTGAAG	1 cut(s)	554
Eco72I	CACGTG	1 cut(s)	698
Eco91I	GGTNACC	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	200
EcoRV	GATATC	2 cut(s)	522, 640
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	763
ErhI	CCWWGG	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	6 cut(s)	142, 226, 313, 328, 818, 1055
FalI	AAGNNNNNCTT	4 cut(s)	693, 725, 894, 926
FatI	CATG	6 cut(s)	138, 222, 309, 324, 814, 1051
FblI	GTMKAC	2 cut(s)	185, 329
Fnu4HI	GCNGC	4 cut(s)	288, 291, 294, 942
FokI	GGATG	2 cut(s)	35, 243
FriOI	GRGCYC	1 cut(s)	763
Fsp4HI	GCNGC	4 cut(s)	288, 291, 294, 942
FspBI	CTAG	2 cut(s)	150, 606
GlaI	GCGC	2 cut(s)	885, 891
GluI	GCNGC	4 cut(s)	288, 291, 294, 942
HaeII	RGCGCY	2 cut(s)	887, 893
HaeIII	GGCC	5 cut(s)	41, 50, 148, 922, 1010
HapII	CCGG	3 cut(s)	726, 782, 836
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	2 cut(s)	886, 892
Hin1II	CATG	6 cut(s)	142, 226, 313, 328, 818, 1055
Hin6I	GCGC	2 cut(s)	884, 890
HinP1I	GCGC	2 cut(s)	884, 890
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	3 cut(s)	135, 447, 832
HpaI	GTTAAC	1 cut(s)	16
HpaII	CCGG	3 cut(s)	726, 782, 836
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	4 cut(s)	16, 186, 330, 394
Hpy188I	TCNGA	4 cut(s)	420, 569, 896, 1091
Hpy188III	TCNNGA	3 cut(s)	32, 223, 310
Hpy8I	GTNNAC	4 cut(s)	16, 186, 330, 394
HpyAV	CCTTC	4 cut(s)	486, 539, 572, 628
HpyCH4III	ACNGT	2 cut(s)	469, 796
HpyCH4IV	ACGT	4 cut(s)	18, 403, 697, 1038
HpyCH4V	TGCA	5 cut(s)	244, 290, 336, 611, 941
HpyF3I	CTNAG	5 cut(s)	57, 211, 417, 550, 945
HpySE526I	ACGT	4 cut(s)	18, 403, 697, 1038
Hsp92II	CATG	6 cut(s)	142, 226, 313, 328, 818, 1055
HspAI	GCGC	2 cut(s)	884, 890
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	4, 94, 653
LmnI	GCTCC	4 cut(s)	86, 220, 235, 896
Lsp1109I	GCAGC	4 cut(s)	274, 280, 302, 953
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	2 cut(s)	150, 606
MaeII	ACGT	4 cut(s)	18, 403, 697, 1038
MaeIII	GTNAC	6 cut(s)	200, 299, 362, 409, 687, 1039
MalI	GATC	3 cut(s)	6, 96, 655
MboI	GATC	3 cut(s)	4, 94, 653
MboII	GAAGA	5 cut(s)	371, 547, 713, 815, 965
MflI	RGATCY	1 cut(s)	653
MhlI	GDGCHC	2 cut(s)	763, 901
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	3 cut(s)	538, 672, 1074
MluNI	TGGCCA	1 cut(s)	41
MmeI	TCCRAC	4 cut(s)	257, 592, 774, 1049
Mox20I	TGGCCA	1 cut(s)	41
Mph1103I	ATGCAT	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	5 cut(s)	15, 626, 650, 711, 1077
MslI	CAYNNNNRTG	2 cut(s)	179, 308
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	2 cut(s)	293, 532
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	3 cut(s)	726, 782, 836
MspR9I	CCNGG	1 cut(s)	782
NciI	CCSGG	1 cut(s)	782
NdeII	GATC	3 cut(s)	4, 94, 653
NlaIII	CATG	6 cut(s)	142, 226, 313, 328, 818, 1055
NsiI	ATGCAT	1 cut(s)	246
PagI	TCATGA	2 cut(s)	222, 309
PceI	AGGCCT	2 cut(s)	148, 922
PfeI	GAWTC	3 cut(s)	135, 447, 832
PkrI	GCNGC	4 cut(s)	289, 292, 295, 943
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
Ppu21I	YACGTR	1 cut(s)	698
PspCI	CACGTG	1 cut(s)	698
PspEI	GGTNACC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	49, 1009
PstI	CTGCAG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	653
PvuII	CAGCTG	2 cut(s)	293, 532
RsaI	GTAC	2 cut(s)	65, 395
RsaNI	GTAC	2 cut(s)	64, 394
RseI	CAYNNNNRTG	2 cut(s)	179, 308
SaqAI	TTAA	5 cut(s)	15, 626, 650, 711, 1077
SatI	GCNGC	4 cut(s)	288, 291, 294, 942
Sau3AI	GATC	3 cut(s)	4, 94, 653
Sau96I	GGNCC	2 cut(s)	49, 1009
ScrFI	CCNGG	1 cut(s)	782
SduI	GDGCHC	2 cut(s)	763, 901
SfaNI	GCATC	1 cut(s)	607
SfcI	CTRYAG	3 cut(s)	288, 456, 924
SfiI	GGCCNNNNNGGCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	2 cut(s)	179, 308
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	3 cut(s)	538, 672, 1074
SseBI	AGGCCT	2 cut(s)	148, 922
SspMI	CTAG	2 cut(s)	150, 606
StuI	AGGCCT	2 cut(s)	148, 922
StyD4I	CCNGG	1 cut(s)	780
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	469, 796
TaiI	ACGT	4 cut(s)	21, 406, 700, 1041
TaqI	TCGA	2 cut(s)	642, 771
TasI	AATT	3 cut(s)	538, 672, 1074
TatI	WGTACW	2 cut(s)	63, 393
TfiI	GAWTC	3 cut(s)	135, 447, 832
Tru1I	TTAA	5 cut(s)	15, 626, 650, 711, 1077
Tru9I	TTAA	5 cut(s)	15, 626, 650, 711, 1077
TseI	GCWGC	4 cut(s)	287, 290, 293, 941
TspDTI	ATGAA	4 cut(s)	126, 313, 591, 803
TspGWI	ACGGA	1 cut(s)	119
Vha464I	CTTAAG	1 cut(s)	710
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	1 cut(s)	538
XmaJI	CCTAGG	1 cut(s)	149
XmiI	GTMKAC	2 cut(s)	185, 329
XspI	CTAG	2 cut(s)	150, 606
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.