Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004706

Physical Location & Seq

Genomic Coordinates Forward (+)

21935880 .. 21939183

Gene Structure 3304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCATCTGAACCTGTAAATGTCAATGAATTCCAAGAATTGGCTAAGCAAGTCCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCAGTTCACGCTAAAAGAGAATGTTGAAGCATTTCGCAGAATCATATTAAGGCCTAGAGTTCTAGTAGATGTTAGCAGGATCGATATGTCAACCACTGTATTGGGTTACAAAATCTCAGCGCCGATAATGATTGCTCCTACTTCTATGCATCAGTTAGCACACCCTGAAGGAGAGGTGGCTACTGCTAGAGCTGCAGCTGCATCCAACACTATAATGATTTTGTCCTACTCTTCTACCTGCACTGTGGAGGAGGTTGCGTCGAGCTGCAATACTGTTCGGTTCTTTCAATTATATGTTTTCAAGAGACGAGATATATCGGCTCAGATAGTTCAAAGAGCTGAAAAAAATGGATACAAGGCTATTGTACTAACTGTCGATGCTCCCAGACTTGGTAGAAGAGAGGCAGATATAAAGAACAAAATGATTTCACCTCAGTTGAAAAACTTCGAAGGCCTAATATCAACTGAACTACTAGACTCTGATGAAGGATCCAACTTGGAAGCTTTTGTCAGAGCGTCCTATGATGATTCTTTGTGCTGGGAGGACGTAATAGGATGGTTAAAATCTATTACAAACTTGCCAATTCTAGTCAAGGGTATACTCACTCATGAAGATGCAAGAAAGGCTGTGGAAGTTGGTGTTGCCGGGATTGTTGTCTCTAATCACGGAGCACGACAACTAGACTATACTCCGGCCACCATTTCTGTCCTGGAAGAGGTGGTTCAAGCTGTTGGAGGGAAAGTTCCTGTTCTTTTTGATGGAGGAATACGGCGAGGAACTGATGTCTTCAAGGCATTAGCCCTCGGTGCACAAGCCGTCCTTGTAAAGATCTCCATGCCACTACTGTTTGAATCATCTAGCTTTATCAATCTTTTTATACATTTTTTTTTCCTGCGAGAATTGTCATGCAAATGTGTTAGTGTAGGTTGGAAGGCCTGTTATCTATGGCCTTGCAGCAAATGGAGAAGATGGGGTGAGAAAGGTCATGAAGATGTTGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

367

Amino Acids

40.82

Weight (kDa)

6.35

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	15 - 308	3.4e-112	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14130 AT3G14130 AT3G14150 AT3G14150
fragaria_vesca	FvH4_6g35190 FvH4_6g35192
malus_domestica	MD09G1177800.v1.1 MD17G1148900.v1.1
prunus_persica	Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1
pyrus_communis	pycom09g09620 pycom17g14260
rosa_chinensis	RchiOBHm_Chr2g0146451 RchiOBHm_Chr2g0146471 RchiOBHm_Chr2g0146501
rosa_laevigata	RLG00000020202 RLG00000020203
rosa_multiflora	Rmu_co8466583.1_g000001 Rmu_sc0001986.1_g000011 Rmu_sc0024495.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100070 Rroxscaffold_2G00100080
rosa_rugosa	Rorug02G0394600
rosa_samantha	Rh2DG472800 Rh2DG472900
rosa_wichuraiana	Rw2G036840 Rw2G036850 Rw2G036860 Rw2G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	344
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	697
AclWI	GGATC	3 cut(s)	185, 582, 595
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	2 cut(s)	68, 465
AfiI	CCNNNNNNNGG	3 cut(s)	40, 488, 814
AgsI	TTSAA	9 cut(s)	125, 386, 400, 431, 538, 824, 889, 950, 1097
AjnI	CCWGG	1 cut(s)	807
AloI	GAACNNNNNNTCC	2 cut(s)	825, 857
AluBI	AGCT	8 cut(s)	92, 290, 296, 363, 437, 602, 827, 960
AluI	AGCT	8 cut(s)	92, 290, 296, 363, 437, 602, 827, 960
Alw21I	GWGCWC	2 cut(s)	772, 910
Alw26I	GTCTC	2 cut(s)	397, 760
Alw44I	GTGCAC	1 cut(s)	906
AlwI	GGATC	3 cut(s)	185, 582, 595
AoxI	GGCC	5 cut(s)	149, 550, 792, 1032, 1046
ApaLI	GTGCAC	1 cut(s)	906
ApeKI	GCWGC	5 cut(s)	290, 293, 296, 363, 1053
ApoI	RAATTY	1 cut(s)	29
Asp700I	GAANNNNTTC	2 cut(s)	129, 542
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	745
AsuHPI	GGTGA	2 cut(s)	519, 1085
AsuII	TTCGAA	1 cut(s)	546
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	910
BamHI	GGATCC	1 cut(s)	587
BbsI	GAAGAC	1 cut(s)	877
Bbv12I	GWGCWC	2 cut(s)	772, 910
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	5 cut(s)	277, 283, 305, 350, 1065
BccI	CCATC	3 cut(s)	648, 851, 1062
BceAI	ACGGC	2 cut(s)	884, 899
BciT130I	CCWGG	1 cut(s)	809
BciVI	GTATCC	1 cut(s)	443
BcnI	CCSGG	1 cut(s)	745
BcoDI	GTCTC	2 cut(s)	397, 760
BfaI	CTAG	7 cut(s)	153, 161, 285, 572, 686, 779, 957
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	443
BglII	AGATCT	1 cut(s)	927
BisI	GCNGC	5 cut(s)	291, 294, 297, 364, 1054
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	5 cut(s)	292, 295, 298, 365, 1055
Bme1390I	CCNGG	2 cut(s)	745, 809
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	2 cut(s)	745, 809
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	5 cut(s)	14, 256, 308, 466, 703
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	877
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	745
Bsa29I	ATCGAT	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	901
BsaXI	ACNNNNNCTCC	4 cut(s)	341, 371, 825, 855
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 488, 814
Bse1I	ACTGG	2 cut(s)	88, 100
BseBI	CCWGG	1 cut(s)	809
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	901
BseGI	GGATG	2 cut(s)	299, 659
BseLI	CCNNNNNNNGG	3 cut(s)	40, 488, 814
BseMII	CTCAG	4 cut(s)	84, 228, 434, 545
BseNI	ACTGG	2 cut(s)	88, 100
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	910
BseXI	GCAGC	5 cut(s)	277, 283, 305, 350, 1065
BseYI	CCCAGC	1 cut(s)	636
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	5 cut(s)	151, 552, 794, 1034, 1048
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	772, 910
BsiSI	CCGG	2 cut(s)	744, 791
BslI	CCNNNNNNNGG	3 cut(s)	40, 488, 814
BsmAI	GTCTC	2 cut(s)	397, 760
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	5 cut(s)	151, 552, 794, 1034, 1048
Bsp119I	TTCGAA	1 cut(s)	546
Bsp1286I	GDGCHC	2 cut(s)	772, 910
Bsp143I	GATC	3 cut(s)	177, 587, 927
Bsp1720I	GCTNAGC	1 cut(s)	45
BspANI	GGCC	5 cut(s)	151, 552, 794, 1034, 1048
BspCNI	CTCAG	4 cut(s)	85, 227, 433, 544
BspDI	ATCGAT	1 cut(s)	180
BspHI	TCATGA	2 cut(s)	706, 1084
BspLI	GGNNCC	1 cut(s)	589
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	3 cut(s)	185, 582, 595
BspT104I	TTCGAA	1 cut(s)	546
BsrI	ACTGG	2 cut(s)	88, 100
BssECI	CCNNGG	1 cut(s)	901
BssMI	GATC	3 cut(s)	177, 587, 927
BssNAI	GTATAC	1 cut(s)	698
Bst1107I	GTATAC	1 cut(s)	698
Bst2UI	CCWGG	1 cut(s)	809
Bst4CI	ACNGT	5 cut(s)	196, 343, 373, 472, 945
Bst6I	CTCTTC	3 cut(s)	334, 490, 807
BstBI	TTCGAA	1 cut(s)	546
BstDEI	CTNAG	5 cut(s)	45, 93, 214, 420, 531
BstENI	CCTNNNNNAGG	1 cut(s)	812
BstF5I	GGATG	2 cut(s)	299, 659
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	180, 590, 930
BstMAI	GTCTC	2 cut(s)	397, 760
BstMBI	GATC	3 cut(s)	177, 587, 927
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 296, 722, 905
BstNI	CCWGG	1 cut(s)	809
BstSCI	CCNGG	2 cut(s)	743, 807
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	910
BstV1I	GCAGC	5 cut(s)	277, 283, 305, 350, 1065
BstV2I	GAAGAC	1 cut(s)	877
BstX2I	RGATCY	2 cut(s)	587, 927
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	2 cut(s)	587, 927
BstZ17I	GTATAC	1 cut(s)	698
Bsu15I	ATCGAT	1 cut(s)	180
BsuI	GTATCC	1 cut(s)	443
BsuRI	GGCC	5 cut(s)	151, 552, 794, 1034, 1048
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	299, 659
BtsIMutI	CAGTG	2 cut(s)	192, 339
BveI	ACCTGC	1 cut(s)	344
CciI	TCATGA	2 cut(s)	706, 1084
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	2 cut(s)	345, 603
Csp6I	GTAC	2 cut(s)	67, 464
CviAII	CATG	4 cut(s)	707, 934, 1005, 1085
CviQI	GTAC	2 cut(s)	67, 464
DdeI	CTNAG	5 cut(s)	45, 93, 214, 420, 531
DpnI	GATC	3 cut(s)	179, 589, 929
DpnII	GATC	3 cut(s)	177, 587, 927
EaeI	YGGCCR	1 cut(s)	792
Eam1104I	CTCTTC	3 cut(s)	334, 490, 807
EarI	CTCTTC	3 cut(s)	334, 490, 807
Eco147I	AGGCCT	3 cut(s)	151, 552, 1034
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	285
EcoNI	CCTNNNNNAGG	1 cut(s)	812
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	807
EcoT22I	ATGCAT	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	4 cut(s)	710, 937, 1008, 1088
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FatI	CATG	4 cut(s)	706, 933, 1004, 1084
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	5 cut(s)	291, 294, 297, 364, 1054
FokI	GGATG	2 cut(s)	286, 666
Fsp4HI	GCNGC	5 cut(s)	291, 294, 297, 364, 1054
FspBI	CTAG	7 cut(s)	153, 161, 285, 572, 686, 779, 957
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	5 cut(s)	291, 294, 297, 364, 1054
GsaI	CCCAGC	1 cut(s)	640
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	5 cut(s)	151, 552, 794, 1034, 1048
HapII	CCGG	2 cut(s)	744, 791
HgaI	GACGC	2 cut(s)	345, 603
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	710, 937, 1008, 1088
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	4 cut(s)	138, 575, 626, 950
HpaII	CCGG	2 cut(s)	744, 791
HphI	GGTGA	2 cut(s)	519, 1085
Hpy166II	GTNNAC	4 cut(s)	105, 189, 698, 908
Hpy188I	TCNGA	4 cut(s)	10, 423, 580, 611
Hpy188III	TCNNGA	3 cut(s)	400, 707, 1085
Hpy8I	GTNNAC	4 cut(s)	105, 189, 698, 908
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	6 cut(s)	65, 260, 542, 578, 1024, 1091
HpyCH4III	ACNGT	5 cut(s)	196, 343, 373, 472, 945
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	9 cut(s)	247, 293, 299, 339, 366, 716, 908, 1008, 1053
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 296, 722, 905
HpyF3I	CTNAG	5 cut(s)	45, 93, 214, 420, 531
HpySE526I	ACGT	1 cut(s)	645
Hsp92II	CATG	4 cut(s)	710, 937, 1008, 1088
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	3 cut(s)	177, 587, 927
LmnI	GCTCC	4 cut(s)	89, 238, 484, 767
Lsp1109I	GCAGC	5 cut(s)	277, 283, 305, 350, 1065
LweI	GCATC	5 cut(s)	14, 256, 308, 466, 703
MaeI	CTAG	7 cut(s)	153, 161, 285, 572, 686, 779, 957
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	179, 589, 929
MboI	GATC	3 cut(s)	177, 587, 927
MboII	GAAGA	7 cut(s)	321, 507, 722, 824, 877, 1077, 1100
MflI	RGATCY	2 cut(s)	587, 927
MhlI	GDGCHC	2 cut(s)	772, 910
MluCI	AATT	5 cut(s)	29, 38, 386, 681, 998
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	4 cut(s)	327, 615, 811, 1007
Mph1103I	ATGCAT	1 cut(s)	249
MroXI	GAANNNNTTC	2 cut(s)	129, 542
MseI	TTAA	2 cut(s)	146, 659
MslI	CAYNNNNRTG	4 cut(s)	311, 711, 1009, 1089
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	2 cut(s)	744, 791
MspR9I	CCNGG	2 cut(s)	745, 809
MvaI	CCWGG	1 cut(s)	809
MwoI	GCNNNNNNNGC	4 cut(s)	290, 296, 722, 905
NciI	CCSGG	1 cut(s)	745
NdeII	GATC	3 cut(s)	177, 587, 927
NlaIII	CATG	4 cut(s)	710, 937, 1008, 1088
NlaIV	GGNNCC	1 cut(s)	589
NsiI	ATGCAT	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	546
PagI	TCATGA	2 cut(s)	706, 1084
PceI	AGGCCT	3 cut(s)	151, 552, 1034
PdmI	GAANNNNTTC	2 cut(s)	129, 542
PfeI	GAWTC	3 cut(s)	138, 626, 950
PflMI	CCANNNNNTGG	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	5 cut(s)	292, 295, 298, 365, 1055
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	807
PspFI	CCCAGC	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	807
PspN4I	GGNNCC	1 cut(s)	589
PspPI	GGNCC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	587, 927
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	2 cut(s)	68, 465
RsaNI	GTAC	2 cut(s)	67, 464
RseI	CAYNNNNRTG	4 cut(s)	311, 711, 1009, 1089
SaqAI	TTAA	2 cut(s)	146, 659
SatI	GCNGC	5 cut(s)	291, 294, 297, 364, 1054
Sau3AI	GATC	3 cut(s)	177, 587, 927
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	2 cut(s)	745, 809
SduI	GDGCHC	2 cut(s)	772, 910
SfaNI	GCATC	5 cut(s)	14, 256, 308, 466, 703
SfcI	CTRYAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	546
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	4 cut(s)	311, 711, 1009, 1089
Sse9I	AATT	5 cut(s)	29, 38, 386, 681, 998
SseBI	AGGCCT	3 cut(s)	151, 552, 1034
SspMI	CTAG	7 cut(s)	153, 161, 285, 572, 686, 779, 957
StuI	AGGCCT	3 cut(s)	151, 552, 1034
StyD4I	CCNGG	2 cut(s)	743, 807
TaaI	ACNGT	5 cut(s)	196, 343, 373, 472, 945
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	4 cut(s)	180, 359, 474, 546
TasI	AATT	5 cut(s)	29, 38, 386, 681, 998
TatI	WGTACW	2 cut(s)	66, 463
TfiI	GAWTC	3 cut(s)	138, 626, 950
Tru1I	TTAA	2 cut(s)	146, 659
Tru9I	TTAA	2 cut(s)	146, 659
TscAI	CASTG	2 cut(s)	199, 346
TseI	GCWGC	5 cut(s)	290, 293, 296, 363, 1053
TspDTI	ATGAA	4 cut(s)	42, 597, 723, 1101
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	2 cut(s)	199, 346
Van91I	CCANNNNNTGG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	906
VpaK11BI	GGWCC	1 cut(s)	97
XagI	CCTNNNNNAGG	1 cut(s)	812
XapI	RAATTY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	697
XmnI	GAANNNNTTC	2 cut(s)	129, 542
XspI	CTAG	7 cut(s)	153, 161, 285, 572, 686, 779, 957
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.