Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004706

Physical Location & Seq

Genomic Coordinates Reverse (-)

60660166 .. 60662469

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCATCTGAACCTGTAAATGTCAATGAATTCCAAGAATTGGCTAAGCAAGTCCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCAGTTCACGCTAAAAGAGAATGTTGAAGCATTTCACAGAATCACATTAAGGCCTAGAGTTCTGGTAGATGTTAGCAGGATCGATATGTCAACCACTGTATTGGGAGAGGTGGCTACTGCTAGAGCTGCAGCTGCATCCAACACTATAATGATTTTGTCCTACTCTTCTACCTGCACTGTGGAGGAGGTTGCTTCGAGCTGCAATGCTGTTCGGTTCTTTCAATTATATGTTTTCAAGAGACGGGATATATCTGCTCAGATAGTTCAAAGAGCTGAAAAAAATGGGTACAAGGCTATTGTACTAACTGTCGATGCTCCCAGACTTGGTAGAAGAGAGGCAGACATAAAGAACAAAATGATTTCAACTCAATTGAAAAACTTCGAAGGCCTAATATCAACTGAACTAGACTCTGACGTAATAGGATGGTTAAAATCTATTACAAACTTGCCAATTCTAGTCAAGGGTATCCTCACTCATGAAGATGCAAGAAAGGCTGTGGAAGTTGGTGTTGCCGGGATTGTTGTCTCTAATCACGGAGCACGACAACTAGACTACACTCCGGCCACTATTTCTGTCCTGGAAGAGGTGGTTCAAGCTGTTGGAGGGAAAGTTCCTGTTCTTTTTGATGGAGGAATACGGCGAGGAACTGATGTCTTCAAGGCATTGGCCCTCGGTGCACAAGCCGTCCTTGTTGGAAGGCCGGTTATCTATGGCCTTGCAGCAAATGGAGAAAATGGGGTGAGAACGGTCATGAAGATGTTGAAGGATGAGTTAGAGCTCACTATGGCTCTCTCTGGCTGTCCTAGTGTTAAGGATATTACCAGGAGCCACGTGAAAACAGAATGTGAAAGACTCCGCTCCCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

322

Amino Acids

35.26

Weight (kDa)

8.26

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	15 - 69	1.7e-14	FMN-dependent dehydrogenase
FMN_dh	PF01070	68 - 312	9e-93	FMN-dependent dehydrogenase
NMO	PF03060	185 - 301	2e-06	Nitronate monooxygenase
IMPDH	PF00478	223 - 266	1.7e-06	IMP dehydrogenase / GMP reductase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14130 AT3G14130 AT3G14150 AT3G14150
fragaria_vesca	FvH4_6g35190 FvH4_6g35192
malus_domestica	MD09G1177800.v1.1 MD17G1148900.v1.1
prunus_persica	Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1
pyrus_communis	pycom09g09620 pycom17g14260
rosa_chinensis	RchiOBHm_Chr2g0146451 RchiOBHm_Chr2g0146471 RchiOBHm_Chr2g0146501
rosa_laevigata	RLG00000020202 RLG00000020203
rosa_multiflora	Rmu_co8466583.1_g000001 Rmu_sc0001986.1_g000011 Rmu_sc0024495.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100070 Rroxscaffold_2G00100080
rosa_rugosa	Rorug02G0394600
rosa_samantha	Rh2DG472800 Rh2DG472900
rosa_wichuraiana	Rw2G036840 Rw2G036850 Rw2G036860 Rw2G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	957
AciI	CCGC	1 cut(s)	955
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	1 cut(s)	29
AcvI	CACGTG	1 cut(s)	931
AfaI	GTAC	3 cut(s)	68, 386, 399
AfiI	CCNNNNNNNGG	3 cut(s)	40, 422, 682
AgsI	TTSAA	9 cut(s)	125, 320, 334, 365, 462, 472, 692, 757, 862
AjnI	CCWGG	2 cut(s)	675, 920
AloI	GAACNNNNNNTCC	2 cut(s)	693, 725
AluBI	AGCT	8 cut(s)	92, 224, 230, 297, 371, 695, 877, 964
AluI	AGCT	8 cut(s)	92, 224, 230, 297, 371, 695, 877, 964
Alw21I	GWGCWC	3 cut(s)	640, 778, 879
Alw26I	GTCTC	2 cut(s)	331, 628
Alw44I	GTGCAC	1 cut(s)	774
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	6 cut(s)	149, 484, 660, 765, 797, 811
ApaLI	GTGCAC	1 cut(s)	774
ApeKI	GCWGC	5 cut(s)	224, 227, 230, 297, 818
ApoI	RAATTY	1 cut(s)	29
Asp700I	GAANNNNTTC	2 cut(s)	129, 476
AspS9I	GGNCC	2 cut(s)	97, 766
AsuC2I	CCSGG	1 cut(s)	613
AsuHPI	GGTGA	1 cut(s)	850
AsuII	TTCGAA	1 cut(s)	480
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	778
BanII	GRGCYC	1 cut(s)	879
BbrPI	CACGTG	1 cut(s)	931
BbsI	GAAGAC	1 cut(s)	745
Bbv12I	GWGCWC	3 cut(s)	640, 778, 879
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	5 cut(s)	211, 217, 239, 284, 830
BccI	CCATC	2 cut(s)	516, 719
BceAI	ACGGC	2 cut(s)	752, 767
BciT130I	CCWGG	2 cut(s)	677, 922
BciVI	GTATCC	1 cut(s)	575
BcnI	CCSGG	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	331, 628
BfaI	CTAG	6 cut(s)	153, 219, 503, 554, 647, 903
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	575
BisI	GCNGC	5 cut(s)	225, 228, 231, 298, 819
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	5 cut(s)	226, 229, 232, 299, 820
Bme1390I	CCNGG	3 cut(s)	613, 677, 922
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	97, 766
BmiI	GGNNCC	1 cut(s)	926
BmrFI	CCNGG	3 cut(s)	613, 677, 922
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	4 cut(s)	14, 242, 400, 571
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	745
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	613
Bsa29I	ATCGAT	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	931
BsaJI	CCNNGG	1 cut(s)	769
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 422, 682
Bse118I	RCCGGY	1 cut(s)	799
Bse1I	ACTGG	2 cut(s)	88, 100
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	2 cut(s)	677, 922
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	769
BseGI	GGATG	3 cut(s)	233, 527, 871
BseLI	CCNNNNNNNGG	3 cut(s)	40, 422, 682
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	84, 368
BseNI	ACTGG	2 cut(s)	88, 100
BseRI	GAGGAG	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	5 cut(s)	211, 217, 239, 284, 830
BseYI	CCCAGC	1 cut(s)	960
BsgI	GTGCAG	1 cut(s)	256
BshFI	GGCC	6 cut(s)	151, 486, 662, 767, 799, 813
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	3 cut(s)	640, 778, 879
BsiSI	CCGG	3 cut(s)	612, 659, 800
BslI	CCNNNNNNNGG	3 cut(s)	40, 422, 682
BsmAI	GTCTC	2 cut(s)	331, 628
BsmBI	CGTCTC	1 cut(s)	331
BsnI	GGCC	6 cut(s)	151, 486, 662, 767, 799, 813
Bsp119I	TTCGAA	1 cut(s)	480
Bsp1286I	GDGCHC	3 cut(s)	640, 778, 879
Bsp143I	GATC	1 cut(s)	177
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	955
BspANI	GGCC	6 cut(s)	151, 486, 662, 767, 799, 813
BspCNI	CTCAG	2 cut(s)	85, 367
BspDI	ATCGAT	1 cut(s)	180
BspHI	TCATGA	2 cut(s)	574, 849
BspLI	GGNNCC	1 cut(s)	926
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	185
BspT104I	TTCGAA	1 cut(s)	480
BsrBI	CCGCTC	1 cut(s)	957
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	799
BsrI	ACTGG	2 cut(s)	88, 100
BssAI	RCCGGY	1 cut(s)	799
BssECI	CCNNGG	1 cut(s)	769
BssMI	GATC	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	677, 922
Bst4CI	ACNGT	4 cut(s)	196, 277, 406, 847
Bst6I	CTCTTC	3 cut(s)	268, 424, 675
BstBAI	YACGTR	1 cut(s)	931
BstBI	TTCGAA	1 cut(s)	480
BstDEI	CTNAG	3 cut(s)	45, 93, 354
BstENI	CCTNNNNNAGG	1 cut(s)	680
BstF5I	GGATG	3 cut(s)	233, 527, 871
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	331, 628
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 230, 590, 773
BstNI	CCWGG	2 cut(s)	677, 922
BstSCI	CCNGG	3 cut(s)	611, 675, 920
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	778
BstV1I	GCAGC	5 cut(s)	211, 217, 239, 284, 830
BstV2I	GAAGAC	1 cut(s)	745
BstXI	CCANNNNNNTGG	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	180
BsuI	GTATCC	1 cut(s)	575
BsuRI	GGCC	6 cut(s)	151, 486, 662, 767, 799, 813
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	233, 527, 871
BtsIMutI	CAGTG	2 cut(s)	192, 273
BveI	ACCTGC	1 cut(s)	278
CciI	TCATGA	2 cut(s)	574, 849
Cfr10I	RCCGGY	1 cut(s)	799
Cfr13I	GGNCC	2 cut(s)	97, 766
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	67, 385, 398
CviAII	CATG	2 cut(s)	575, 850
CviQI	GTAC	3 cut(s)	67, 385, 398
DdeI	CTNAG	3 cut(s)	45, 93, 354
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	3 cut(s)	268, 424, 675
EarI	CTCTTC	3 cut(s)	268, 424, 675
Ecl136II	GAGCTC	1 cut(s)	877
Eco147I	AGGCCT	2 cut(s)	151, 486
Eco24I	GRGCYC	1 cut(s)	879
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	877
Eco72I	CACGTG	1 cut(s)	931
EcoICRI	GAGCTC	1 cut(s)	877
EcoNI	CCTNNNNNAGG	1 cut(s)	680
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	675, 920
EcoT38I	GRGCYC	1 cut(s)	879
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	2 cut(s)	578, 853
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FatI	CATG	2 cut(s)	574, 849
Fnu4HI	GCNGC	5 cut(s)	225, 228, 231, 298, 819
FokI	GGATG	3 cut(s)	220, 534, 878
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	5 cut(s)	225, 228, 231, 298, 819
FspBI	CTAG	6 cut(s)	153, 219, 503, 554, 647, 903
GluI	GCNGC	5 cut(s)	225, 228, 231, 298, 819
GsaI	CCCAGC	1 cut(s)	964
HaeIII	GGCC	6 cut(s)	151, 486, 662, 767, 799, 813
HapII	CCGG	3 cut(s)	612, 659, 800
Hin1II	CATG	2 cut(s)	578, 853
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	3 cut(s)	138, 506, 951
HpaII	CCGG	3 cut(s)	612, 659, 800
HphI	GGTGA	1 cut(s)	850
Hpy166II	GTNNAC	3 cut(s)	105, 189, 776
Hpy188I	TCNGA	3 cut(s)	10, 357, 511
Hpy188III	TCNNGA	3 cut(s)	334, 575, 850
Hpy8I	GTNNAC	3 cut(s)	105, 189, 776
HpyAV	CCTTC	4 cut(s)	65, 476, 789, 856
HpyCH4III	ACNGT	4 cut(s)	196, 277, 406, 847
HpyCH4IV	ACGT	2 cut(s)	513, 930
HpyCH4V	TGCA	7 cut(s)	227, 233, 273, 300, 584, 776, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 230, 590, 773
HpyF3I	CTNAG	3 cut(s)	45, 93, 354
HpySE526I	ACGT	2 cut(s)	513, 930
Hsp92II	CATG	2 cut(s)	578, 853
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	5 cut(s)	89, 418, 635, 924, 962
Lsp1109I	GCAGC	5 cut(s)	211, 217, 239, 284, 830
LweI	GCATC	4 cut(s)	14, 242, 400, 571
MaeI	CTAG	6 cut(s)	153, 219, 503, 554, 647, 903
MaeII	ACGT	2 cut(s)	513, 930
MalI	GATC	1 cut(s)	179
MbiI	CCGCTC	1 cut(s)	957
MboI	GATC	1 cut(s)	177
MboII	GAAGA	6 cut(s)	255, 441, 590, 692, 745, 865
MfeI	CAATTG	1 cut(s)	467
MhlI	GDGCHC	3 cut(s)	640, 778, 879
MluCI	AATT	5 cut(s)	29, 38, 320, 467, 549
MlyI	GAGTC	2 cut(s)	500, 945
MmeI	TCCRAC	3 cut(s)	261, 679, 772
MroXI	GAANNNNTTC	2 cut(s)	129, 476
MseI	TTAA	4 cut(s)	146, 527, 909, 967
MslI	CAYNNNNRTG	3 cut(s)	245, 579, 854
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	3 cut(s)	612, 659, 800
MspR9I	CCNGG	3 cut(s)	613, 677, 922
MunI	CAATTG	1 cut(s)	467
MvaI	CCWGG	2 cut(s)	677, 922
MwoI	GCNNNNNNNGC	4 cut(s)	224, 230, 590, 773
NciI	CCSGG	1 cut(s)	613
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	578, 853
NlaIV	GGNNCC	1 cut(s)	926
NspV	TTCGAA	1 cut(s)	480
PagI	TCATGA	2 cut(s)	574, 849
PceI	AGGCCT	2 cut(s)	151, 486
PdmI	GAANNNNTTC	2 cut(s)	129, 476
PfeI	GAWTC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	675
PkrI	GCNGC	5 cut(s)	226, 229, 232, 299, 820
PleI	GAGTC	2 cut(s)	500, 945
PmaCI	CACGTG	1 cut(s)	931
PmlI	CACGTG	1 cut(s)	931
PpsI	GAGTC	2 cut(s)	500, 945
Ppu21I	YACGTR	1 cut(s)	931
Psp124BI	GAGCTC	1 cut(s)	879
Psp6I	CCWGG	2 cut(s)	675, 920
PspCI	CACGTG	1 cut(s)	931
PspFI	CCCAGC	1 cut(s)	960
PspGI	CCWGG	2 cut(s)	675, 920
PspN4I	GGNNCC	1 cut(s)	926
PspPI	GGNCC	2 cut(s)	97, 766
PstI	CTGCAG	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	3 cut(s)	68, 386, 399
RsaNI	GTAC	3 cut(s)	67, 385, 398
RseI	CAYNNNNRTG	3 cut(s)	245, 579, 854
SacI	GAGCTC	1 cut(s)	879
SaqAI	TTAA	4 cut(s)	146, 527, 909, 967
SatI	GCNGC	5 cut(s)	225, 228, 231, 298, 819
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	97, 766
SchI	GAGTC	2 cut(s)	500, 945
ScrFI	CCNGG	3 cut(s)	613, 677, 922
SduI	GDGCHC	3 cut(s)	640, 778, 879
SfaNI	GCATC	4 cut(s)	14, 242, 400, 571
SfcI	CTRYAG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	480
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	3 cut(s)	245, 579, 854
Sse9I	AATT	5 cut(s)	29, 38, 320, 467, 549
SseBI	AGGCCT	2 cut(s)	151, 486
SsiI	CCGC	1 cut(s)	955
SspMI	CTAG	6 cut(s)	153, 219, 503, 554, 647, 903
SstI	GAGCTC	1 cut(s)	879
StuI	AGGCCT	2 cut(s)	151, 486
StyD4I	CCNGG	3 cut(s)	611, 675, 920
TaaI	ACNGT	4 cut(s)	196, 277, 406, 847
TaiI	ACGT	2 cut(s)	516, 933
TaqI	TCGA	4 cut(s)	180, 293, 408, 480
TasI	AATT	5 cut(s)	29, 38, 320, 467, 549
TatI	WGTACW	2 cut(s)	66, 397
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	4 cut(s)	146, 527, 909, 967
Tru9I	TTAA	4 cut(s)	146, 527, 909, 967
TscAI	CASTG	2 cut(s)	199, 280
TseI	GCWGC	5 cut(s)	224, 227, 230, 297, 818
TspDTI	ATGAA	3 cut(s)	42, 591, 866
TspGWI	ACGGA	1 cut(s)	648
TspRI	CASTG	2 cut(s)	199, 280
Van91I	CCANNNNNTGG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	774
VpaK11BI	GGWCC	1 cut(s)	97
XagI	CCTNNNNNAGG	1 cut(s)	680
XapI	RAATTY	1 cut(s)	29
XmnI	GAANNNNTTC	2 cut(s)	129, 476
XspI	CTAG	6 cut(s)	153, 219, 503, 554, 647, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.