Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024495.1

Orthogroup ID

OG0004706

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 925

Gene Structure 925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024495.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 404 bp

aaattaagtttttacctgctctttcaggagaggtggctactgctagagctgcagctgcatccaacactataatgattttgtcctactcttctacctgcactgtggaagaggttgcttcgagctgcaatgctgttcggttctttcaactatatgttttcaagagacgagatatatcggctcagatagttcaaagagctgaaaaaaatggatacaaggctattgtactaactgtcgatgctcccaggcttggtagaagagaggcagacataaagaacaaaatgatttcacctcagttgaaaaacttcgaaggcctaatatcaactgaactagactgtgatgaaggatccaacttggaagcttttgtcagagcggtctatgatgattctttgtgctgggaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

133

Amino Acids

14.73

Weight (kDa)

5.53

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14130 AT3G14130 AT3G14150 AT3G14150
fragaria_vesca	FvH4_6g35190 FvH4_6g35192
malus_domestica	MD09G1177800.v1.1 MD17G1148900.v1.1
prunus_persica	Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1
pyrus_communis	pycom09g09620 pycom17g14260
rosa_chinensis	RchiOBHm_Chr2g0146451 RchiOBHm_Chr2g0146471 RchiOBHm_Chr2g0146501
rosa_laevigata	RLG00000020202 RLG00000020203
rosa_multiflora	Rmu_co8466583.1_g000001 Rmu_sc0001986.1_g000011 Rmu_sc0024495.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100070 Rroxscaffold_2G00100080
rosa_rugosa	Rorug02G0394600
rosa_samantha	Rh2DG472800 Rh2DG472900
rosa_wichuraiana	Rw2G036840 Rw2G036850 Rw2G036860 Rw2G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	24, 103
AccBSI	CCGCTC	1 cut(s)	370
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	2 cut(s)	338, 351
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	4 cut(s)	145, 159, 190, 297
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	5 cut(s)	49, 55, 122, 196, 358
AluI	AGCT	5 cut(s)	49, 55, 122, 196, 358
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	338, 351
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	4 cut(s)	49, 52, 55, 122
Asp700I	GAANNNNTTC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	278
AsuII	TTCGAA	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	343
BbvI	GCAGC	4 cut(s)	36, 42, 64, 109
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	2 cut(s)	44, 328
BfmI	CTRYAG	1 cut(s)	50
BfuAI	ACCTGC	2 cut(s)	24, 103
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	4 cut(s)	50, 53, 56, 123
BlsI	GCNGC	4 cut(s)	51, 54, 57, 124
Bme1390I	CCNGG	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	2 cut(s)	67, 225
Bpu14I	TTCGAA	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	193, 304
BseXI	GCAGC	4 cut(s)	36, 42, 64, 109
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	192, 303
BspLI	GGNNCC	1 cut(s)	345
BspMAI	CTGCAG	1 cut(s)	54
BspMI	ACCTGC	2 cut(s)	24, 103
BspPI	GGATC	2 cut(s)	338, 351
BspT104I	TTCGAA	1 cut(s)	305
BsrBI	CCGCTC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	102, 231, 334
Bst6I	CTCTTC	3 cut(s)	93, 101, 249
BstBI	TTCGAA	1 cut(s)	305
BstDEI	CTNAG	2 cut(s)	179, 290
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 55
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	4 cut(s)	36, 42, 64, 109
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	98
BveI	ACCTGC	2 cut(s)	24, 103
Csp6I	GTAC	1 cut(s)	223
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	2 cut(s)	179, 290
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eam1104I	CTCTTC	3 cut(s)	93, 101, 249
EarI	CTCTTC	3 cut(s)	93, 101, 249
Eco147I	AGGCCT	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	156
FaiI	YATR	7 cut(s)	70, 150, 152, 172, 268, 377, 402
Fnu4HI	GCNGC	4 cut(s)	50, 53, 56, 123
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	4 cut(s)	50, 53, 56, 123
FspBI	CTAG	2 cut(s)	44, 328
GluI	GCNGC	4 cut(s)	50, 53, 56, 123
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	311
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	1 cut(s)	382
HphI	GGTGA	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	182, 367
Hpy188III	TCNNGA	2 cut(s)	26, 159
HpyAV	CCTTC	2 cut(s)	301, 334
HpyCH4III	ACNGT	3 cut(s)	102, 231, 334
HpyCH4V	TGCA	4 cut(s)	52, 58, 98, 125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 55
HpyF3I	CTNAG	2 cut(s)	179, 290
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	6 cut(s)	11, 29, 108, 228, 255, 378
Lsp1109I	GCAGC	4 cut(s)	36, 42, 64, 109
LweI	GCATC	2 cut(s)	67, 225
MaeI	CTAG	2 cut(s)	44, 328
MalI	GATC	1 cut(s)	345
MbiI	CCGCTC	1 cut(s)	370
MboI	GATC	1 cut(s)	343
MboII	GAAGA	3 cut(s)	80, 118, 266
MflI	RGATCY	1 cut(s)	343
MluCI	AATT	1 cut(s)	2
MmeI	TCCRAC	2 cut(s)	86, 371
MnlI	CCTC	5 cut(s)	24, 102, 252, 299, 390
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	70
MspA1I	CMGCKG	1 cut(s)	55
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	49, 55
NdeII	GATC	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	4 cut(s)	51, 54, 57, 124
Psp6I	CCWGG	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	345
PstI	CTGCAG	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	4 cut(s)	50, 53, 56, 123
Sau3AI	GATC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	243
SfaNI	GCATC	2 cut(s)	67, 225
SfcI	CTRYAG	1 cut(s)	50
SfuI	TTCGAA	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	70
Sse9I	AATT	1 cut(s)	2
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	2 cut(s)	44, 328
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	3 cut(s)	102, 231, 334
TaqI	TCGA	3 cut(s)	118, 233, 305
TasI	AATT	1 cut(s)	2
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	4 cut(s)	49, 52, 55, 122
TspDTI	ATGAA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	2 cut(s)	44, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.