Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004706

Physical Location & Seq

Genomic Coordinates Forward (+)

50492512 .. 50504013

Gene Structure 11502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0394600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGGGAACTCTCCAACCAAACCCTAATCCTCCTCCCATTGACGATGATGAACCGGATCACGACCCGCCTTATTTTCCCGCCATTTCCGAAATCCCAATCCCGCTCTCAGATTTAAAGCCTCCGCCTTCGCCTCTTCAGTGCGCTCAAACCCTAGCTTCCGGTGCCGGAATTCCCTCCCGCAATCCCGATACTTCTACTGAGAACGGCGACTCGACCAAACCGGTTGCTAATGGCTTCGCCGCCAACACTCACTTCGGCGCCGACCGGGACTTCTCCGGCCGAGAGGAGGAGGCCTCCAGCAGCCGCCGCCGCCGGAGCCGGTGGGACCCCCAGCCGGAGGCGGAAAGCCAGAGCGGCGTCGGCGCGCGGAGGAGGAAGTCGCGGTGGGCCGATGAGGAGGAGCCGAAGCCGGTGATTCAGCTGCCGGGGTTCATGGGAGGTATTGAATTCGATCCTGAAATTCAAGCTTTGAATAGTAGGCATCTTGAGATTAGTAGGATGTTGTCTTCCGGTTTGCCTTTAGATGATCGCCCGGAAGGGGATAGGTCTCCGTCGCCGGAGCCGGTGTATGATAACTTTGGAATTAGGATTAATACAAGAGAGTTTCGTGCGCGTGAGAGGTTGAACAAAGAGAGGCAGGAAATTATTACTCAGATTATTAAGAGGAACCCTACATTTAAGCCTCCGGCGGATTACAGGCCGCCCAAGCTTCACAAGAAGCTGTACATACCCGTGAAAGAGTACCCTGGTTATAGTTTTATGGGACTTATCATTGGCCCGAGGGGGAATACCCAGAAGAGGATGGAGAAGGAGACTGGTGCTAAGATTGTCATTAGGGGTAGAGGGTCGGTGAAAGAGGGTAGGTCGCAACAGAAGAGGGATTCGAAGCCTGACCCGTCTGAAAATGAGGACTTGCATGTTTTGGTTGAGGCCGACACGCAGGAGGCTGTTGATGCCGCAGCTGGGATGGTAGAGAAGCTGTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAGCAGCTTAAGGAACTCGCATTGTTGAATGGGACTATTAGGGAAGAGGAGTTTTGTAGGTTATGTGGTGAGCCGGGGCACCATCAGAATGCCTGTCCCTCACGAACTTCAACGTTTAAGAGCGATGTTCTTTGTAAGATATGTGGTGATGGTGGGCATCCAACTATTGATTGTCCAGTGAAGGGTACGAATGGGAAGAAAATGGATGATGAGTACCGGAACTTTTTGGCTGAGTTAGGTGGGACAATGCCTGAATCAGCAACTAAGCAGACTGCTACTTTGGCTCTTGGCGCAGGCAGTTCAGTAAGCAGTCCTCCTTGGGTTAGCAATGCTGGGAATGCTAGCAGTACAGCACATCCAGGATTGGGCTCAACTGGATTGAAGCCTAGCAGGGAATATGATGACACAAATTTGTACATTGGGCACTTGCCACCTACTCTTGATGATGATGGTTTGATCGGGTTGTTTTCACGTTTCGGTAATATTGTGATGTGCAAAGTTATTAAGGACCGGGCTACTGGATTGAGTAAAGGTTATGGATTTGTGAAGTACGCTGATGTTCGGATGGCTAATAGTGCAATTGCAAGCATGAATGGTTTTTCCCTCGAGGGTCGAACCATTGCTGTCAGAGTTGCTGGCAAGTCTCAACAACCTGTTGTGTCTCCTGGACCACCAGCTTCGGCAATGTCACCATACCCGGTCTCAAGCCAGCCTGTTGGTGCTTATCCATCCCAGCAATTTACCCCAGGTGGCCCTCTTTGGACTGTACCATCTACTAGCTATGCAGGAACTCCAGTTCCTTGGGGACCCCCTGTTCCTCATCCGTATTCTCCTTATGCTTCTCCACCTCCCCCTCCTCCAGGTTCAACCATGTATCCTCCTCCCACGCCGGGTCTACCTATGGCTGCTTACAGTGCACAATACCCTCCTCCTCCTGGTGCATCACCTCAGCCAGTGACGTTAAGTGAAGCACAACAGAGTTTTCCTCGTCCAGGGGTTCAATCTGAAAGATATACCCAATCTGCACCAACTAATATATACACAATGCCAACAAATGGCCAACATGCTTATCCTACATCTGCATATGGTTACCCATCTTACTACAATGCAGTTCCACCACCTCCTGCCCCCAGACCTGTACCTGGTTCAACTGCAGACCAATCCCAGAGCATTGGTAATGTGCCATGGGCCACAAGTACTCCTGTTCTTCCTCCTACTTCTTCTGCAGATAAAGCAACTCACGGTGCAGATGCAGATTATGAGAAAGTTCATGGCGGAGATGAAATGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

770

Amino Acids

83.09

Weight (kDa)

6.07

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	125 - 233	3.9e-25	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	247 - 329	9.7e-24	KHDC4/BBP-like, KH-domain type I
RRM_1	PF00076	478 - 547	2e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14130 AT3G14130 AT3G14150 AT3G14150
fragaria_vesca	FvH4_6g35190 FvH4_6g35192
malus_domestica	MD09G1177800.v1.1 MD17G1148900.v1.1
prunus_persica	Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1
pyrus_communis	pycom09g09620 pycom17g14260
rosa_chinensis	RchiOBHm_Chr2g0146451 RchiOBHm_Chr2g0146471 RchiOBHm_Chr2g0146501
rosa_laevigata	RLG00000020202 RLG00000020203
rosa_multiflora	Rmu_co8466583.1_g000001 Rmu_sc0001986.1_g000011 Rmu_sc0024495.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100070 Rroxscaffold_2G00100080
rosa_rugosa	Rorug02G0394600
rosa_samantha	Rh2DG472800 Rh2DG472900
rosa_wichuraiana	Rw2G036840 Rw2G036850 Rw2G036860 Rw2G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1625
AccB1I	GGYRCC	3 cut(s)	161, 257, 1098
AccB7I	CCANNNNNTGG	1 cut(s)	2075
AccBSI	CCGCTC	2 cut(s)	103, 354
AccI	GTMKAC	1 cut(s)	1915
AccII	CGCG	4 cut(s)	365, 367, 382, 613
AclI	AACGTT	1 cut(s)	1133
AclWI	GGATC	2 cut(s)	63, 446
AcoI	YGGCCR	2 cut(s)	277, 2077
AcsI	RAATTY	4 cut(s)	168, 446, 459, 1429
AcuI	CTGAAG	1 cut(s)	119
AcyI	GRCGYC	2 cut(s)	258, 357
AflII	CTTAAG	1 cut(s)	1028
AgeI	ACCGGT	1 cut(s)	220
AjnI	CCWGG	8 cut(s)	745, 1378, 1684, 1765, 1879, 1954, 2011, 2161
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AloI	GAACNNNNNNTCC	6 cut(s)	1800, 1801, 1818, 1832, 1833, 1850
Alw21I	GWGCWC	1 cut(s)	1939
Alw26I	GTCTC	5 cut(s)	552, 806, 1668, 1686, 1726
Alw44I	GTGCAC	1 cut(s)	1935
AlwI	GGATC	2 cut(s)	63, 446
Ama87I	CYCGRG	2 cut(s)	778, 1625
AoxI	GGCC	9 cut(s)	277, 291, 387, 698, 775, 930, 1771, 2077, 2208
ApaLI	GTGCAC	1 cut(s)	1935
ApeKI	GCWGC	7 cut(s)	300, 421, 959, 985, 1021, 1024, 1925
ApoI	RAATTY	4 cut(s)	168, 446, 459, 1429
ArsI	GACNNNNNNTTYG	2 cut(s)	1282, 1314
AseI	ATTAAT	1 cut(s)	591
AsiGI	ACCGGT	1 cut(s)	220
AspLEI	GCGC	6 cut(s)	143, 260, 365, 367, 613, 1313
AspS9I	GGNCC	8 cut(s)	325, 387, 776, 1528, 1688, 1772, 1826, 2208
AsuC2I	CCSGG	7 cut(s)	266, 426, 533, 1095, 1532, 1718, 1911
AsuHPI	GGTGA	6 cut(s)	424, 862, 1100, 1178, 1701, 1956
AsuII	TTCGAA	1 cut(s)	884
AsuNHI	GCTAGC	1 cut(s)	1361
AvaI	CYCGRG	2 cut(s)	778, 1625
AvaII	GGWCC	4 cut(s)	325, 1528, 1688, 1826
BaeGI	GKGCMC	3 cut(s)	1101, 1446, 1939
BalI	TGGCCA	1 cut(s)	2079
BanI	GGYRCC	3 cut(s)	161, 257, 1098
BanII	GRGCYC	1 cut(s)	1391
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	1939
BbvCI	CCTCAGC	1 cut(s)	1968
BbvI	GCAGC	7 cut(s)	312, 408, 971, 997, 1033, 1036, 1912
BccI	CCATC	9 cut(s)	796, 961, 1110, 1163, 1463, 1579, 1756, 1798, 2122
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	8 cut(s)	747, 1380, 1686, 1767, 1881, 1956, 2013, 2163
BciVI	GTATCC	1 cut(s)	1905
BcnI	CCSGG	7 cut(s)	266, 426, 533, 1095, 1532, 1718, 1911
BcoDI	GTCTC	5 cut(s)	552, 806, 1668, 1686, 1726
BfaI	CTAG	4 cut(s)	152, 1362, 1407, 1797
BfmI	CTRYAG	2 cut(s)	2172, 2244
BfoI	RGCGCY	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	1028
BfuI	GTATCC	1 cut(s)	1905
BglI	GCCNNNNNGGC	1 cut(s)	354
BmcAI	AGTACT	1 cut(s)	2218
Bme18I	GGWCC	4 cut(s)	325, 1528, 1688, 1826
BmeT110I	CYCGRG	2 cut(s)	778, 1625
BmgT120I	GGNCC	8 cut(s)	325, 387, 776, 1528, 1688, 1772, 1826, 2208
BmsI	GCATC	5 cut(s)	490, 943, 1186, 1970, 2260
BmtI	GCTAGC	1 cut(s)	1365
BpiI	GAAGAC	1 cut(s)	498
BplI	GAGNNNNNCTC	4 cut(s)	278, 310, 1990, 2022
BpmI	CTGGAG	3 cut(s)	280, 1797, 1863
Bpu10I	CCTNAGC	1 cut(s)	1968
Bpu14I	TTCGAA	1 cut(s)	884
BpuEI	CTTGAG	2 cut(s)	506, 1708
BpuMI	CCSGG	7 cut(s)	266, 426, 533, 1095, 1532, 1718, 1911
BsaHI	GRCGYC	2 cut(s)	258, 357
BsaI	GGTCTC	2 cut(s)	552, 1726
BsaJI	CCNNGG	9 cut(s)	425, 745, 779, 1094, 1337, 1765, 1820, 2012, 2204
BsaWI	WCCGGW	5 cut(s)	52, 158, 220, 509, 1236
BsaXI	ACNNNNNCTCC	4 cut(s)	551, 581, 2203, 2233
Bse118I	RCCGGY	4 cut(s)	220, 318, 409, 562
Bse1I	ACTGG	6 cut(s)	820, 1196, 1399, 1543, 1814, 1973
Bse3DI	GCAATG	3 cut(s)	1354, 1638, 1710
BseBI	CCWGG	8 cut(s)	747, 1380, 1686, 1767, 1881, 1956, 2013, 2163
BseDI	CCNNGG	9 cut(s)	425, 745, 779, 1094, 1337, 1765, 1820, 2012, 2204
BseMI	GCAATG	3 cut(s)	1354, 1638, 1710
BseMII	CTCAG	5 cut(s)	120, 189, 665, 1242, 1982
BseNI	ACTGG	6 cut(s)	820, 1196, 1399, 1543, 1814, 1973
BsePI	GCGCGC	1 cut(s)	363
BseSI	GKGCMC	3 cut(s)	1101, 1446, 1939
BseX3I	CGGCCG	1 cut(s)	277
BseXI	GCAGC	7 cut(s)	312, 408, 971, 997, 1033, 1036, 1912
BseYI	CCCAGC	4 cut(s)	330, 962, 1352, 1752
BsgI	GTGCAG	2 cut(s)	2028, 2286
Bsh1236I	CGCG	4 cut(s)	365, 367, 382, 613
Bsh1285I	CGRYCG	2 cut(s)	265, 280
BshFI	GGCC	9 cut(s)	279, 293, 389, 700, 777, 932, 1773, 2079, 2210
BshNI	GGYRCC	3 cut(s)	161, 257, 1098
BshTI	ACCGGT	1 cut(s)	220
BsiEI	CGRYCG	2 cut(s)	265, 280
BsiHKAI	GWGCWC	1 cut(s)	1939
BsiHKCI	CYCGRG	2 cut(s)	778, 1625
BslFI	GGGAC	7 cut(s)	281, 338, 777, 1066, 1101, 1276, 1839
BsmAI	GTCTC	5 cut(s)	552, 806, 1668, 1686, 1726
BsmFI	GGGAC	7 cut(s)	281, 338, 777, 1066, 1101, 1276, 1839
BsmI	GAATGC	2 cut(s)	1114, 1363
BsnI	GGCC	9 cut(s)	279, 293, 389, 700, 777, 932, 1773, 2079, 2210
Bso31I	GGTCTC	2 cut(s)	552, 1726
BsoBI	CYCGRG	2 cut(s)	778, 1625
Bsp119I	TTCGAA	1 cut(s)	884
Bsp1286I	GDGCHC	4 cut(s)	1101, 1391, 1446, 1939
Bsp1407I	TGTACA	2 cut(s)	723, 1434
Bsp143I	GATC	4 cut(s)	55, 451, 526, 1476
Bsp19I	CCATGG	1 cut(s)	2204
BspANI	GGCC	9 cut(s)	279, 293, 389, 700, 777, 932, 1773, 2079, 2210
BspCNI	CTCAG	5 cut(s)	119, 190, 664, 1243, 1981
BspFNI	CGCG	4 cut(s)	365, 367, 382, 613
BspMAI	CTGCAG	2 cut(s)	2176, 2248
BspOI	GCTAGC	1 cut(s)	1365
BspPI	GGATC	2 cut(s)	63, 446
BspT104I	TTCGAA	1 cut(s)	884
BspT107I	GGYRCC	3 cut(s)	161, 257, 1098
BspTI	CTTAAG	1 cut(s)	1028
BspTNI	GGTCTC	2 cut(s)	552, 1726
BsrBI	CCGCTC	2 cut(s)	103, 354
BsrDI	GCAATG	3 cut(s)	1354, 1638, 1710
BsrFI	RCCGGY	4 cut(s)	220, 318, 409, 562
BsrGI	TGTACA	2 cut(s)	723, 1434
BsrI	ACTGG	6 cut(s)	820, 1196, 1399, 1543, 1814, 1973
BssAI	RCCGGY	4 cut(s)	220, 318, 409, 562
BssECI	CCNNGG	9 cut(s)	425, 745, 779, 1094, 1337, 1765, 1820, 2012, 2204
BssHII	GCGCGC	1 cut(s)	363
BssMI	GATC	4 cut(s)	55, 451, 526, 1476
BssNI	GRCGYC	2 cut(s)	258, 357
BssT1I	CCWWGG	3 cut(s)	1337, 1820, 2204
Bst2UI	CCWGG	8 cut(s)	747, 1380, 1686, 1767, 1881, 1956, 2013, 2163
Bst4CI	ACNGT	3 cut(s)	1786, 1934, 2264
Bst6I	CTCTTC	4 cut(s)	138, 791, 869, 1059
BstACI	GRCGYC	2 cut(s)	258, 357
BstAFI	CTTAAG	1 cut(s)	1028
BstAUI	TGTACA	2 cut(s)	723, 1434
BstBI	TTCGAA	1 cut(s)	884
BstC8I	GCNNGC	6 cut(s)	365, 1315, 1363, 1606, 1657, 1730
BstDEI	CTNAG	7 cut(s)	106, 198, 651, 822, 1251, 1284, 1968
BstDSI	CCRYGG	1 cut(s)	2204
BstEII	GGTNACC	1 cut(s)	2108
BstENI	CCTNNNNNAGG	2 cut(s)	1878, 2010
BstFNI	CGCG	4 cut(s)	365, 367, 382, 613
BstH2I	RGCGCY	1 cut(s)	261
BstHHI	GCGC	6 cut(s)	143, 260, 365, 367, 613, 1313
BstKTI	GATC	4 cut(s)	58, 454, 529, 1479
BstMAI	GTCTC	5 cut(s)	552, 806, 1668, 1686, 1726
BstMBI	GATC	4 cut(s)	55, 451, 526, 1476
BstMCI	CGRYCG	2 cut(s)	265, 280
BstNI	CCWGG	8 cut(s)	747, 1380, 1686, 1767, 1881, 1956, 2013, 2163
BstNSI	RCATGY	2 cut(s)	920, 2087
BstPI	GGTNACC	1 cut(s)	2108
BstSFI	CTRYAG	2 cut(s)	2172, 2244
BstSLI	GKGCMC	3 cut(s)	1101, 1446, 1939
BstUI	CGCG	4 cut(s)	365, 367, 382, 613
BstV1I	GCAGC	7 cut(s)	312, 408, 971, 997, 1033, 1036, 1912
BstV2I	GAAGAC	1 cut(s)	498
BstXI	CCANNNNNNTGG	3 cut(s)	1736, 1821, 2192
BstZI	CGGCCG	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	1905
BsuRI	GGCC	9 cut(s)	279, 293, 389, 700, 777, 932, 1773, 2079, 2210
BtgI	CCRYGG	1 cut(s)	2204
BtgZI	GCGATG	1 cut(s)	1158
BtsIMutI	CAGTG	4 cut(s)	143, 1203, 1939, 1980
Cac8I	GCNNGC	6 cut(s)	365, 1315, 1363, 1606, 1657, 1730
CfoI	GCGC	6 cut(s)	143, 260, 365, 367, 613, 1313
Cfr10I	RCCGGY	4 cut(s)	220, 318, 409, 562
Cfr13I	GGNCC	8 cut(s)	325, 387, 776, 1528, 1688, 1772, 1826, 2208
CseI	GACGC	1 cut(s)	346
CsiI	ACCWGGT	1 cut(s)	2161
CspAI	ACCGGT	1 cut(s)	220
CviAII	CATG	7 cut(s)	433, 917, 1609, 1891, 2084, 2205, 2291
DdeI	CTNAG	7 cut(s)	106, 198, 651, 822, 1251, 1284, 1968
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	4 cut(s)	57, 453, 528, 1478
DpnII	GATC	4 cut(s)	55, 451, 526, 1476
DraI	TTTAAA	1 cut(s)	114
EaeI	YGGCCR	2 cut(s)	277, 2077
EagI	CGGCCG	1 cut(s)	277
Eam1104I	CTCTTC	4 cut(s)	138, 791, 869, 1059
EarI	CTCTTC	4 cut(s)	138, 791, 869, 1059
EciI	GGCGGA	4 cut(s)	111, 356, 704, 2310
EclXI	CGGCCG	1 cut(s)	277
Eco130I	CCWWGG	3 cut(s)	1337, 1820, 2204
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	1391
Eco31I	GGTCTC	2 cut(s)	552, 1726
Eco47I	GGWCC	4 cut(s)	325, 1528, 1688, 1826
Eco52I	CGGCCG	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	119
Eco88I	CYCGRG	2 cut(s)	778, 1625
Eco91I	GGTNACC	1 cut(s)	2108
EcoNI	CCTNNNNNAGG	2 cut(s)	1878, 2010
EcoO109I	RGGNCCY	2 cut(s)	325, 1826
EcoO65I	GGTNACC	1 cut(s)	2108
EcoRI	GAATTC	2 cut(s)	168, 446
EcoRII	CCWGG	8 cut(s)	745, 1378, 1684, 1765, 1879, 1954, 2011, 2161
EcoT14I	CCWWGG	3 cut(s)	1337, 1820, 2204
EcoT38I	GRGCYC	1 cut(s)	1391
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
ErhI	CCWWGG	3 cut(s)	1337, 1820, 2204
FaeI	CATG	7 cut(s)	436, 920, 1612, 1894, 2087, 2208, 2294
FaqI	GGGAC	7 cut(s)	281, 338, 777, 1066, 1101, 1276, 1839
FatI	CATG	7 cut(s)	432, 916, 1608, 1890, 2083, 2204, 2290
FauI	CCCGC	4 cut(s)	72, 85, 108, 185
FauNDI	CATATG	1 cut(s)	2104
FblI	GTMKAC	1 cut(s)	1915
FriOI	GRGCYC	1 cut(s)	1391
FspBI	CTAG	4 cut(s)	152, 1362, 1407, 1797
GlaI	GCGC	6 cut(s)	142, 259, 364, 366, 612, 1312
GsaI	CCCAGC	4 cut(s)	334, 966, 1356, 1756
GsuI	CTGGAG	3 cut(s)	280, 1797, 1863
HaeII	RGCGCY	1 cut(s)	261
HaeIII	GGCC	9 cut(s)	279, 293, 389, 700, 777, 932, 1773, 2079, 2210
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	6 cut(s)	143, 260, 365, 367, 613, 1313
Hin1I	GRCGYC	2 cut(s)	258, 357
Hin1II	CATG	7 cut(s)	436, 920, 1612, 1894, 2087, 2208, 2294
Hin6I	GCGC	6 cut(s)	141, 258, 363, 365, 611, 1311
HinP1I	GCGC	6 cut(s)	141, 258, 363, 365, 611, 1311
HindIII	AAGCTT	2 cut(s)	465, 707
HinfI	GANTC	4 cut(s)	209, 415, 881, 1274
HphI	GGTGA	6 cut(s)	424, 862, 1100, 1178, 1701, 1956
Hpy166II	GTNNAC	2 cut(s)	1916, 1937
Hpy188I	TCNGA	8 cut(s)	88, 109, 654, 901, 1107, 1584, 1649, 2026
Hpy188III	TCNNGA	6 cut(s)	59, 185, 455, 485, 1122, 1460
Hpy8I	GTNNAC	2 cut(s)	1916, 1937
Hpy99I	CGWCG	2 cut(s)	362, 556
HpyAV	CCTTC	4 cut(s)	135, 530, 802, 1195
HpyCH4III	ACNGT	3 cut(s)	1786, 1934, 2264
HpyCH4IV	ACGT	3 cut(s)	1133, 1492, 1979
HpyF3I	CTNAG	7 cut(s)	106, 198, 651, 822, 1251, 1284, 1968
HpySE526I	ACGT	3 cut(s)	1133, 1492, 1979
Hsp92I	GRCGYC	2 cut(s)	258, 357
Hsp92II	CATG	7 cut(s)	436, 920, 1612, 1894, 2087, 2208, 2294
HspAI	GCGC	6 cut(s)	141, 258, 363, 365, 611, 1311
KasI	GGCGCC	1 cut(s)	257
KflI	GGGWCCC	2 cut(s)	325, 1826
Kzo9I	GATC	4 cut(s)	55, 451, 526, 1476
LmnI	GCTCC	3 cut(s)	315, 400, 559
Lsp1109I	GCAGC	7 cut(s)	312, 408, 971, 997, 1033, 1036, 1912
LweI	GCATC	5 cut(s)	490, 943, 1186, 1970, 2260
MabI	ACCWGGT	1 cut(s)	2161
MaeI	CTAG	4 cut(s)	152, 1362, 1407, 1797
MaeII	ACGT	3 cut(s)	1133, 1492, 1979
MaeIII	GTNAC	3 cut(s)	1707, 1975, 2108
MalI	GATC	4 cut(s)	57, 453, 528, 1478
MbiI	CCGCTC	2 cut(s)	103, 354
MboI	GATC	4 cut(s)	55, 451, 526, 1476
MboII	GAAGA	8 cut(s)	125, 498, 808, 886, 1076, 1228, 2219, 2232
MfeI	CAATTG	1 cut(s)	1599
MhlI	GDGCHC	4 cut(s)	1101, 1391, 1446, 1939
MlsI	TGGCCA	1 cut(s)	2079
MluCI	AATT	8 cut(s)	168, 446, 459, 582, 642, 1429, 1599, 1757
MluNI	TGGCCA	1 cut(s)	2079
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	2 cut(s)	37, 1205
Mox20I	TGGCCA	1 cut(s)	2079
MscI	TGGCCA	1 cut(s)	2079
MseI	TTAA	8 cut(s)	113, 591, 660, 678, 1029, 1137, 1524, 1982
MslI	CAYNNNNRTG	2 cut(s)	731, 1107
Msp20I	TGGCCA	1 cut(s)	2079
MspA1I	CMGCKG	2 cut(s)	421, 962
MspCI	CTTAAG	1 cut(s)	1028
MunI	CAATTG	1 cut(s)	1599
Mva1269I	GAATGC	2 cut(s)	1114, 1363
MvaI	CCWGG	8 cut(s)	747, 1380, 1686, 1767, 1881, 1956, 2013, 2163
MvnI	CGCG	4 cut(s)	365, 367, 382, 613
NarI	GGCGCC	1 cut(s)	258
NciI	CCSGG	7 cut(s)	266, 426, 533, 1095, 1532, 1718, 1911
NcoI	CCATGG	1 cut(s)	2204
NdeI	CATATG	1 cut(s)	2104
NdeII	GATC	4 cut(s)	55, 451, 526, 1476
NheI	GCTAGC	1 cut(s)	1361
NlaIII	CATG	7 cut(s)	436, 920, 1612, 1894, 2087, 2208, 2294
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	2 cut(s)	1707, 1975
NspI	RCATGY	2 cut(s)	920, 2087
NspV	TTCGAA	1 cut(s)	884
PaeR7I	CTCGAG	1 cut(s)	1625
PauI	GCGCGC	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	293
PctI	GAATGC	2 cut(s)	1114, 1363
PfeI	GAWTC	3 cut(s)	415, 881, 1274
PflMI	CCANNNNNTGG	1 cut(s)	2075
PfoI	TCCNGGA	2 cut(s)	1378, 1684
PinAI	ACCGGT	1 cut(s)	220
PleI	GAGTC	1 cut(s)	203
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	203
PpuMI	RGGWCCY	2 cut(s)	325, 1826
PshBI	ATTAAT	1 cut(s)	591
Psp1406I	AACGTT	1 cut(s)	1133
Psp5II	RGGWCCY	2 cut(s)	325, 1826
Psp6I	CCWGG	8 cut(s)	745, 1378, 1684, 1765, 1879, 1954, 2011, 2161
PspEI	GGTNACC	1 cut(s)	2108
PspFI	CCCAGC	4 cut(s)	330, 962, 1352, 1752
PspGI	CCWGG	8 cut(s)	745, 1378, 1684, 1765, 1879, 1954, 2011, 2161
PspPI	GGNCC	8 cut(s)	325, 387, 776, 1528, 1688, 1772, 1826, 2208
PspPPI	RGGWCCY	2 cut(s)	325, 1826
PspXI	VCTCGAGB	1 cut(s)	1625
PstI	CTGCAG	2 cut(s)	2176, 2248
PteI	GCGCGC	1 cut(s)	363
PvuII	CAGCTG	2 cut(s)	421, 962
RseI	CAYNNNNRTG	2 cut(s)	731, 1107
SaqAI	TTAA	8 cut(s)	113, 591, 660, 678, 1029, 1137, 1524, 1982
Sau3AI	GATC	4 cut(s)	55, 451, 526, 1476
Sau96I	GGNCC	8 cut(s)	325, 387, 776, 1528, 1688, 1772, 1826, 2208
ScaI	AGTACT	1 cut(s)	2218
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	4 cut(s)	1101, 1391, 1446, 1939
SexAI	ACCWGGT	1 cut(s)	2161
SfaNI	GCATC	5 cut(s)	490, 943, 1186, 1970, 2260
SfcI	CTRYAG	2 cut(s)	2172, 2244
SfoI	GGCGCC	1 cut(s)	259
Sfr274I	CTCGAG	1 cut(s)	1625
SfuI	TTCGAA	1 cut(s)	884
SinI	GGWCC	4 cut(s)	325, 1528, 1688, 1826
SlaI	CTCGAG	1 cut(s)	1625
SmiMI	CAYNNNNRTG	2 cut(s)	731, 1107
SmlI	CTYRAG	4 cut(s)	485, 1028, 1625, 1723
SmoI	CTYRAG	4 cut(s)	485, 1028, 1625, 1723
Sse9I	AATT	8 cut(s)	168, 446, 459, 582, 642, 1429, 1599, 1757
SseBI	AGGCCT	1 cut(s)	293
SspDI	GGCGCC	1 cut(s)	257
SspI	AATATT	1 cut(s)	1504
SspMI	CTAG	4 cut(s)	152, 1362, 1407, 1797
StuI	AGGCCT	1 cut(s)	293
StyI	CCWWGG	3 cut(s)	1337, 1820, 2204
TaaI	ACNGT	3 cut(s)	1786, 1934, 2264
TaiI	ACGT	3 cut(s)	1136, 1495, 1982
TaqI	TCGA	5 cut(s)	212, 450, 884, 1626, 1633
TasI	AATT	8 cut(s)	168, 446, 459, 582, 642, 1429, 1599, 1757
TatI	WGTACW	4 cut(s)	723, 1367, 1434, 2216
TauI	GCSGC	7 cut(s)	242, 306, 309, 312, 357, 703, 959
TfiI	GAWTC	3 cut(s)	415, 881, 1274
Tru1I	TTAA	8 cut(s)	113, 591, 660, 678, 1029, 1137, 1524, 1982
Tru9I	TTAA	8 cut(s)	113, 591, 660, 678, 1029, 1137, 1524, 1982
TscAI	CASTG	4 cut(s)	143, 1203, 1939, 1980
TseFI	GTSAC	2 cut(s)	1707, 1975
TseI	GCWGC	7 cut(s)	300, 421, 959, 985, 1021, 1024, 1925
Tsp45I	GTSAC	2 cut(s)	1707, 1975
TspDTI	ATGAA	4 cut(s)	63, 421, 1625, 2279
TspGWI	ACGGA	2 cut(s)	540, 1833
TspRI	CASTG	4 cut(s)	143, 1203, 1939, 1980
Van91I	CCANNNNNTGG	1 cut(s)	2075
Vha464I	CTTAAG	1 cut(s)	1028
VneI	GTGCAC	1 cut(s)	1935
VpaK11BI	GGWCC	4 cut(s)	325, 1528, 1688, 1826
VspI	ATTAAT	1 cut(s)	591
XagI	CCTNNNNNAGG	2 cut(s)	1878, 2010
XapI	RAATTY	4 cut(s)	168, 446, 459, 1429
XceI	RCATGY	2 cut(s)	920, 2087
XhoI	CTCGAG	1 cut(s)	1625
XmiI	GTMKAC	1 cut(s)	1915
XspI	CTAG	4 cut(s)	152, 1362, 1407, 1797
ZrmI	AGTACT	1 cut(s)	2218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.