RLG00000020203

(S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
62412158 .. 62420867
8710 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020203

Sequence Viewer

Length: 1101 bp
ATGGCATCTGAACCTGTAAATGTCAATGAATTCCAAGAATTGGCTAAGCAAGTCCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCAGTTCACGCTAAAAGAGAATGTTGAAGCATTTCGCAGAATCATATTAAGGCCTAGAGTTCTGGTAGATGTTAGCAGGATTGATATGTCGACCACTGTATTGGGTTACAAAATCTCAGCGCCGATAATGATTGCTCCTACTTCTATGCATCAGTTAGCACACCCTGAAGGAGAGGTGGCTACTGCTAGAGCTGCAGCTGCATCCAACACTATAATGATTTTGTCCTACTCTTCTACCTGCACTGTGGAGGAGGTTGCTTTGAGCTGCAATGCTGTTCGGTTCTTTCAATTATATGTTTTCAAGAGACGAGATATATCGGCTCAGATAGTTCAAAGAGCTGAAAAAAATGGATACAAGGCTATTGTGCTAACTGTCGATGCTGCCAGACTTGGTAGAAGAGAGGCAGACATAAAGAACAAAATGATTTCACCTCAGTTGAAAAACTTCGAAGGCCTAATATCAACTGAACTACTAGACTCTGATGAAGGATCCAACTTGGAAGCTTTCGTCAGAGCATCCTATGATGATTCTTTGTGCTGGGAGGACGTAATAGGATGGTTAAAATCTATTACAAACTTGCCAATTCTAATCAAGGGTATACTCACCCATGAAGATGCAAGAAAGGCTGTGGAAGTTGGTGTTGCCGGGATTGTTGTCTCTAATCACGGAGCACGACAACTAGACTATACTCCGGCCACCATTTCTGTCCTGGAAGAGGTGGTTCAAGCTGTTGGAGGGAAAGTTCCTGTTCTTTTTGATGGAGGAATACGGCGAGGAACTGATGTCTTCAAGGCATTAGCCCTCGGTGCACAAGCCGTCCTTGTGGGAAGGCCTGTTATCTATGGCCTTGCAGCAAATGGAGAAGATGGGGTGAGAAAGGTCATGAAGATGTTGAAGGATGAGTTAGAGCTCACTATGGCTCTCTCTGGCTGTCCTAGTGTTAAGGATATTACCAGGAGCCACGTGAGAACAGAATGTGAAAGACTCCGCTCCCAGCTTTAA

Protein Analysis

367

Amino Acids

40.24

Weight (kDa)

6.28

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 15 - 356 2.4e-134 FMN-dependent dehydrogenase
NMO PF03060 229 - 345 3.1e-07 Nitronate monooxygenase
IMPDH PF00478 268 - 310 2e-06 IMP dehydrogenase / GMP reductase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 344
AccB7I CCANNNNNTGG 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 1089
AccI GTMKAC 2 cut(s) 188, 697
AciI CCGC 1 cut(s) 1087
AclWI GGATC 2 cut(s) 582, 595
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 285
AcvI CACGTG 1 cut(s) 1063
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 40, 814
AgsI TTSAA 8 cut(s) 125, 386, 400, 431, 538, 824, 889, 994
AjnI CCWGG 2 cut(s) 807, 1052
AloI GAACNNNNNNTCC 2 cut(s) 825, 857
AluBI AGCT 9 cut(s) 92, 290, 296, 363, 437, 602, 827, 1009, 1096
AluI AGCT 9 cut(s) 92, 290, 296, 363, 437, 602, 827, 1009, 1096
Alw21I GWGCWC 3 cut(s) 772, 910, 1011
Alw26I GTCTC 2 cut(s) 397, 760
Alw44I GTGCAC 1 cut(s) 906
AlwI GGATC 2 cut(s) 582, 595
AoxI GGCC 5 cut(s) 149, 550, 792, 929, 943
ApaLI GTGCAC 1 cut(s) 906
ApeKI GCWGC 6 cut(s) 290, 293, 296, 363, 479, 950
ApoI RAATTY 1 cut(s) 29
Asp700I GAANNNNTTC 2 cut(s) 129, 542
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 745
AsuHPI GGTGA 3 cut(s) 519, 694, 982
AsuII TTCGAA 1 cut(s) 546
AvaII GGWCC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 910
BamHI GGATCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 1011
BbrPI CACGTG 1 cut(s) 1063
BbsI GAAGAC 1 cut(s) 877
Bbv12I GWGCWC 3 cut(s) 772, 910, 1011
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 6 cut(s) 277, 283, 305, 350, 466, 962
BccI CCATC 3 cut(s) 648, 851, 959
BceAI ACGGC 2 cut(s) 884, 899
BciT130I CCWGG 2 cut(s) 809, 1054
BciVI GTATCC 1 cut(s) 443
BcnI CCSGG 1 cut(s) 745
BcoDI GTCTC 2 cut(s) 397, 760
BfaI CTAG 5 cut(s) 153, 285, 572, 779, 1035
BfmI CTRYAG 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 344
BfuI GTATCC 1 cut(s) 443
BisI GCNGC 6 cut(s) 291, 294, 297, 364, 480, 951
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 6 cut(s) 292, 295, 298, 365, 481, 952
Bme1390I CCNGG 3 cut(s) 745, 809, 1054
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 589, 1058
BmrFI CCNGG 3 cut(s) 745, 809, 1054
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 6 cut(s) 14, 256, 308, 466, 623, 703
BmuI ACTGGG 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 877
Bpu10I CCTNAGC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 546
BpuMI CCSGG 1 cut(s) 745
BsaAI YACGTR 1 cut(s) 1063
BsaJI CCNNGG 1 cut(s) 901
BsaXI ACNNNNNCTCC 2 cut(s) 825, 855
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 814
Bse1I ACTGG 2 cut(s) 88, 100
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 2 cut(s) 809, 1054
BseDI CCNNGG 1 cut(s) 901
BseGI GGATG 4 cut(s) 299, 614, 659, 1003
BseLI CCNNNNNNNGG 2 cut(s) 40, 814
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 4 cut(s) 84, 228, 434, 545
BseNI ACTGG 2 cut(s) 88, 100
BseRI GAGGAG 1 cut(s) 362
BseSI GKGCMC 1 cut(s) 910
BseXI GCAGC 6 cut(s) 277, 283, 305, 350, 466, 962
BseYI CCCAGC 2 cut(s) 636, 1092
BsgI GTGCAG 1 cut(s) 322
BshFI GGCC 5 cut(s) 151, 552, 794, 931, 945
BsiHKAI GWGCWC 3 cut(s) 772, 910, 1011
BsiSI CCGG 2 cut(s) 744, 791
BslI CCNNNNNNNGG 2 cut(s) 40, 814
BsmAI GTCTC 2 cut(s) 397, 760
BsmBI CGTCTC 1 cut(s) 397
BsnI GGCC 5 cut(s) 151, 552, 794, 931, 945
Bsp119I TTCGAA 1 cut(s) 546
Bsp1286I GDGCHC 3 cut(s) 772, 910, 1011
Bsp143I GATC 1 cut(s) 587
Bsp1720I GCTNAGC 1 cut(s) 45
BspACI CCGC 1 cut(s) 1087
BspANI GGCC 5 cut(s) 151, 552, 794, 931, 945
BspCNI CTCAG 4 cut(s) 85, 227, 433, 544
BspHI TCATGA 1 cut(s) 981
BspLI GGNNCC 2 cut(s) 589, 1058
BspMAI CTGCAG 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 344
BspPI GGATC 2 cut(s) 582, 595
BspT104I TTCGAA 1 cut(s) 546
BsrBI CCGCTC 1 cut(s) 1089
BsrDI GCAATG 1 cut(s) 373
BsrI ACTGG 2 cut(s) 88, 100
BssECI CCNNGG 1 cut(s) 901
BssMI GATC 1 cut(s) 587
BssNAI GTATAC 1 cut(s) 698
Bst1107I GTATAC 1 cut(s) 698
Bst2UI CCWGG 2 cut(s) 809, 1054
Bst4CI ACNGT 3 cut(s) 196, 343, 472
Bst6I CTCTTC 3 cut(s) 334, 490, 807
BstBAI YACGTR 1 cut(s) 1063
BstBI TTCGAA 1 cut(s) 546
BstDEI CTNAG 5 cut(s) 45, 93, 214, 420, 531
BstENI CCTNNNNNAGG 1 cut(s) 812
BstF5I GGATG 4 cut(s) 299, 614, 659, 1003
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 1 cut(s) 590
BstMAI GTCTC 2 cut(s) 397, 760
BstMBI GATC 1 cut(s) 587
BstMWI GCNNNNNNNGC 4 cut(s) 290, 296, 722, 905
BstNI CCWGG 2 cut(s) 809, 1054
BstSCI CCNGG 3 cut(s) 743, 807, 1052
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 910
BstV1I GCAGC 6 cut(s) 277, 283, 305, 350, 466, 962
BstV2I GAAGAC 1 cut(s) 877
BstX2I RGATCY 1 cut(s) 587
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 587
BstZ17I GTATAC 1 cut(s) 698
BsuI GTATCC 1 cut(s) 443
BsuRI GGCC 5 cut(s) 151, 552, 794, 931, 945
BtsCI GGATG 4 cut(s) 299, 614, 659, 1003
BtsIMutI CAGTG 2 cut(s) 192, 339
BveI ACCTGC 1 cut(s) 344
CciI TCATGA 1 cut(s) 981
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 67
CviAII CATG 2 cut(s) 707, 982
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 5 cut(s) 45, 93, 214, 420, 531
DpnI GATC 1 cut(s) 589
DpnII GATC 1 cut(s) 587
EaeI YGGCCR 1 cut(s) 792
Eam1104I CTCTTC 3 cut(s) 334, 490, 807
EarI CTCTTC 3 cut(s) 334, 490, 807
Ecl136II GAGCTC 1 cut(s) 1009
Eco147I AGGCCT 3 cut(s) 151, 552, 931
Eco24I GRGCYC 1 cut(s) 1011
Eco47I GGWCC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 1009
Eco57I CTGAAG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 1063
EcoICRI GAGCTC 1 cut(s) 1009
EcoNI CCTNNNNNAGG 1 cut(s) 812
EcoRI GAATTC 1 cut(s) 29
EcoRII CCWGG 2 cut(s) 807, 1052
EcoT22I ATGCAT 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 1011
Esp3I CGTCTC 1 cut(s) 397
FaeI CATG 2 cut(s) 710, 985
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FatI CATG 2 cut(s) 706, 981
FblI GTMKAC 2 cut(s) 188, 697
Fnu4HI GCNGC 6 cut(s) 291, 294, 297, 364, 480, 951
FokI GGATG 4 cut(s) 286, 601, 666, 1010
FriOI GRGCYC 1 cut(s) 1011
Fsp4HI GCNGC 6 cut(s) 291, 294, 297, 364, 480, 951
FspBI CTAG 5 cut(s) 153, 285, 572, 779, 1035
GlaI GCGC 1 cut(s) 219
GluI GCNGC 6 cut(s) 291, 294, 297, 364, 480, 951
GsaI CCCAGC 2 cut(s) 640, 1096
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 5 cut(s) 151, 552, 794, 931, 945
HapII CCGG 2 cut(s) 744, 791
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 710, 985
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 600
HinfI GANTC 4 cut(s) 138, 575, 626, 1083
HpaII CCGG 2 cut(s) 744, 791
HphI GGTGA 3 cut(s) 519, 694, 982
Hpy166II GTNNAC 4 cut(s) 105, 189, 698, 908
Hpy188I TCNGA 4 cut(s) 10, 423, 580, 611
Hpy188III TCNNGA 2 cut(s) 400, 982
Hpy8I GTNNAC 4 cut(s) 105, 189, 698, 908
HpyAV CCTTC 6 cut(s) 65, 260, 542, 578, 921, 988
HpyCH4III ACNGT 3 cut(s) 196, 343, 472
HpyCH4IV ACGT 2 cut(s) 645, 1062
HpyCH4V TGCA 8 cut(s) 247, 293, 299, 339, 366, 716, 908, 950
HpyF10VI GCNNNNNNNGC 4 cut(s) 290, 296, 722, 905
HpyF3I CTNAG 5 cut(s) 45, 93, 214, 420, 531
HpySE526I ACGT 2 cut(s) 645, 1062
Hsp92II CATG 2 cut(s) 710, 985
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 1 cut(s) 587
LmnI GCTCC 5 cut(s) 89, 238, 767, 1056, 1094
Lsp1109I GCAGC 6 cut(s) 277, 283, 305, 350, 466, 962
LweI GCATC 6 cut(s) 14, 256, 308, 466, 623, 703
MaeI CTAG 5 cut(s) 153, 285, 572, 779, 1035
MaeII ACGT 2 cut(s) 645, 1062
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 589
MbiI CCGCTC 1 cut(s) 1089
MboI GATC 1 cut(s) 587
MboII GAAGA 7 cut(s) 321, 507, 722, 824, 877, 974, 997
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 3 cut(s) 772, 910, 1011
MluCI AATT 4 cut(s) 29, 38, 386, 681
MlyI GAGTC 2 cut(s) 569, 1077
MmeI TCCRAC 3 cut(s) 327, 615, 811
Mph1103I ATGCAT 1 cut(s) 249
MroXI GAANNNNTTC 2 cut(s) 129, 542
MseI TTAA 4 cut(s) 146, 659, 1041, 1099
MslI CAYNNNNRTG 3 cut(s) 311, 711, 986
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 2 cut(s) 744, 791
MspR9I CCNGG 3 cut(s) 745, 809, 1054
MvaI CCWGG 2 cut(s) 809, 1054
MwoI GCNNNNNNNGC 4 cut(s) 290, 296, 722, 905
NciI CCSGG 1 cut(s) 745
NdeII GATC 1 cut(s) 587
NlaIII CATG 2 cut(s) 710, 985
NlaIV GGNNCC 2 cut(s) 589, 1058
NsiI ATGCAT 1 cut(s) 249
NspV TTCGAA 1 cut(s) 546
PagI TCATGA 1 cut(s) 981
PceI AGGCCT 3 cut(s) 151, 552, 931
PdmI GAANNNNTTC 2 cut(s) 129, 542
PfeI GAWTC 2 cut(s) 138, 626
PflMI CCANNNNNTGG 1 cut(s) 40
PfoI TCCNGGA 1 cut(s) 807
PkrI GCNGC 6 cut(s) 292, 295, 298, 365, 481, 952
PleI GAGTC 2 cut(s) 569, 1077
PmaCI CACGTG 1 cut(s) 1063
PmlI CACGTG 1 cut(s) 1063
PpsI GAGTC 2 cut(s) 569, 1077
Ppu21I YACGTR 1 cut(s) 1063
Psp124BI GAGCTC 1 cut(s) 1011
Psp6I CCWGG 2 cut(s) 807, 1052
PspCI CACGTG 1 cut(s) 1063
PspFI CCCAGC 2 cut(s) 636, 1092
PspGI CCWGG 2 cut(s) 807, 1052
PspN4I GGNNCC 2 cut(s) 589, 1058
PspPI GGNCC 1 cut(s) 97
PstI CTGCAG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 587
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 3 cut(s) 311, 711, 986
SacI GAGCTC 1 cut(s) 1011
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 4 cut(s) 146, 659, 1041, 1099
SatI GCNGC 6 cut(s) 291, 294, 297, 364, 480, 951
Sau3AI GATC 1 cut(s) 587
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 2 cut(s) 569, 1077
ScrFI CCNGG 3 cut(s) 745, 809, 1054
SduI GDGCHC 3 cut(s) 772, 910, 1011
SfaNI GCATC 6 cut(s) 14, 256, 308, 466, 623, 703
SfcI CTRYAG 1 cut(s) 291
SfuI TTCGAA 1 cut(s) 546
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 3 cut(s) 311, 711, 986
Sse9I AATT 4 cut(s) 29, 38, 386, 681
SseBI AGGCCT 3 cut(s) 151, 552, 931
SsiI CCGC 1 cut(s) 1087
SspMI CTAG 5 cut(s) 153, 285, 572, 779, 1035
SstI GAGCTC 1 cut(s) 1011
StuI AGGCCT 3 cut(s) 151, 552, 931
StyD4I CCNGG 3 cut(s) 743, 807, 1052
TaaI ACNGT 3 cut(s) 196, 343, 472
TaiI ACGT 2 cut(s) 648, 1065
TaqI TCGA 3 cut(s) 188, 474, 546
TasI AATT 4 cut(s) 29, 38, 386, 681
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 2 cut(s) 138, 626
Tru1I TTAA 4 cut(s) 146, 659, 1041, 1099
Tru9I TTAA 4 cut(s) 146, 659, 1041, 1099
TscAI CASTG 2 cut(s) 199, 346
TseI GCWGC 6 cut(s) 290, 293, 296, 363, 479, 950
TspDTI ATGAA 4 cut(s) 42, 597, 723, 998
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 2 cut(s) 199, 346
Van91I CCANNNNNTGG 1 cut(s) 40
VneI GTGCAC 1 cut(s) 906
VpaK11BI GGWCC 1 cut(s) 97
XagI CCTNNNNNAGG 1 cut(s) 812
XapI RAATTY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 805
XmiI GTMKAC 2 cut(s) 188, 697
XmnI GAANNNNTTC 2 cut(s) 129, 542
XspI CTAG 5 cut(s) 153, 285, 572, 779, 1035
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.