Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004706

Physical Location & Seq

Genomic Coordinates Forward (+)

7744898 .. 7747244

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09620.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTACTATGATTTTCACGCTGGGGGAGCTGAGGACCAGCACACGCTAAAAGAGAACGTTGAAGCATTTCGCAGAATCACGTTGCGGCCTAGAATTCTCGTCGATGTTAGCAGAATAGATATGTCAACCACCGTATTGGGTTACAAAATTTCAGCGCCTATAATGCTTGCTCCTACTTCTATGCATCAGTTAGCTCACCCCGAAGGAGAGGTTGCCACTGCTAGAGCAGCAGCTGCATGTAACACCATAATGATTTTGTCCAGTATATCTAGCTGCACTGTGGAGGAGGTTGCTTCCAGCTGCGATGCTGTTCGGTTCTTTCAACTATATGTTTTCAAGAGGCGAGATATATCAGCTCAGATAGTTCGCAGAGCTGAAGAAAACGGATACAAGGCTATTGTCCTAACGGTTGATGCTCCCAGACCTGGTCGAAGAGAGGCAGACATAAAGAATAAAATGGTAGCACCTCCATTGAGGAATTTCGAAGGCCTTATATCAACCAAAGTAGACTCTGATAAAGGGTCGAACTTGGAAGCTTTTGCCAAAGTGGCCTATGATGCTTCTCTGTGCTGGGAGGACATAAGATGGCTGAAATCTATTACAAACTTGCCAATTCTAATCAAGGGGGTACTCACTCATGAAGATGCAAGAAAGGCTGTGGAAGTAGGTGTTGCTGGGATTGTTGTCTCGAACCATGGAGCCCGCCAACTGGATTATACTCCCTCCACTATTTCTGTCCTGGAAGAGGTGGTTCATGCTGTTGGAGGAAAAGTTCCTATTCTTTTCGATGGAGGAGTCCGCCGAGGAACAGACGTGTTCAAGGCGTTAGCTCTTGGTGCACAAGCTGTCCTTGTGGGAAGGCCTGTTGTCCACGGCCTCGCAGCAGACGGAGAACGGGGAGTGAGGCGGGTGATCGAAATGCTGAAGAACGAGTTTGAGCTCACAATGGCCCTTTCTGGCTGTCCTAGTATTAGGGATATCACCAGGAGCCATGTGAGAACAGAAAGTGATATACTCCATTCAATGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

344

Amino Acids

37.54

Weight (kDa)

7.71

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14130 AT3G14130 AT3G14150 AT3G14150
fragaria_vesca	FvH4_6g35190 FvH4_6g35192
malus_domestica	MD09G1177800.v1.1 MD17G1148900.v1.1
prunus_persica	Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1
pyrus_communis	pycom09g09620 pycom17g14260
rosa_chinensis	RchiOBHm_Chr2g0146451 RchiOBHm_Chr2g0146471 RchiOBHm_Chr2g0146501
rosa_laevigata	RLG00000020202 RLG00000020203
rosa_multiflora	Rmu_co8466583.1_g000001 Rmu_sc0001986.1_g000011 Rmu_sc0024495.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100070 Rroxscaffold_2G00100080
rosa_rugosa	Rorug02G0394600
rosa_samantha	Rh2DG472800 Rh2DG472900
rosa_wichuraiana	Rw2G036840 Rw2G036850 Rw2G036860 Rw2G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	507
AciI	CCGC	4 cut(s)	85, 703, 799, 907
AclI	AACGTT	1 cut(s)	57
AcsI	RAATTY	3 cut(s)	93, 147, 478
AcuI	CTGAAG	2 cut(s)	396, 944
AfaI	GTAC	2 cut(s)	5, 630
AfiI	CCNNNNNNNGG	3 cut(s)	425, 709, 745
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	5 cut(s)	62, 323, 337, 820, 1023
AjiI	CACGTC	1 cut(s)	814
AjnI	CCWGG	3 cut(s)	424, 738, 983
AloI	GAACNNNNNNTCC	2 cut(s)	756, 788
Alw21I	GWGCWC	2 cut(s)	841, 942
Alw26I	GTCTC	1 cut(s)	691
Alw44I	GTGCAC	1 cut(s)	837
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	6 cut(s)	86, 487, 549, 860, 874, 948
ApaLI	GTGCAC	1 cut(s)	837
ApeKI	GCWGC	6 cut(s)	227, 230, 233, 273, 300, 881
ApoI	RAATTY	3 cut(s)	93, 147, 478
Asp700I	GAANNNNTTC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	34, 949
AsuHPI	GGTGA	3 cut(s)	188, 922, 973
AsuII	TTCGAA	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	841
BanII	GRGCYC	2 cut(s)	703, 942
Bbv12I	GWGCWC	2 cut(s)	841, 942
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	6 cut(s)	220, 239, 242, 260, 287, 893
BccI	CCATC	2 cut(s)	579, 782
BceAI	ACGGC	1 cut(s)	889
BciT130I	CCWGG	3 cut(s)	426, 740, 985
BciVI	GTATCC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	691
BfaI	CTAG	4 cut(s)	90, 222, 270, 966
BfoI	RGCGCY	1 cut(s)	158
BfuI	GTATCC	1 cut(s)	380
BglI	GCCNNNNNGGC	1 cut(s)	548
BisI	GCNGC	7 cut(s)	86, 228, 231, 234, 274, 301, 882
BlsI	GCNGC	7 cut(s)	87, 229, 232, 235, 275, 302, 883
Bme1390I	CCNGG	3 cut(s)	426, 740, 985
Bme18I	GGWCC	1 cut(s)	34
BmgBI	CACGTC	1 cut(s)	814
BmgT120I	GGNCC	2 cut(s)	34, 949
BmiI	GGNNCC	2 cut(s)	700, 989
BmrFI	CCNGG	3 cut(s)	426, 740, 985
BmsI	GCATC	5 cut(s)	193, 295, 403, 547, 634
Bpu10I	CCTNAGC	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	483
BsaJI	CCNNGG	3 cut(s)	694, 802, 871
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bsc4I	CCNNNNNNNGG	3 cut(s)	425, 709, 745
Bse1I	ACTGG	2 cut(s)	261, 714
BseBI	CCWGG	3 cut(s)	426, 740, 985
BseDI	CCNNGG	3 cut(s)	694, 802, 871
BseLI	CCNNNNNNNGG	3 cut(s)	425, 709, 745
BseMII	CTCAG	2 cut(s)	21, 371
BseNI	ACTGG	2 cut(s)	261, 714
BseRI	GAGGAG	2 cut(s)	299, 807
BseSI	GKGCMC	1 cut(s)	841
BseXI	GCAGC	6 cut(s)	220, 239, 242, 260, 287, 893
BseYI	CCCAGC	3 cut(s)	20, 570, 674
BsgI	GTGCAG	1 cut(s)	259
BshFI	GGCC	6 cut(s)	88, 489, 551, 862, 876, 950
BsiHKAI	GWGCWC	2 cut(s)	841, 942
BslI	CCNNNNNNNGG	3 cut(s)	425, 709, 745
BsmAI	GTCTC	1 cut(s)	691
BsnI	GGCC	6 cut(s)	88, 489, 551, 862, 876, 950
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	3 cut(s)	703, 841, 942
Bsp143I	GATC	1 cut(s)	912
Bsp19I	CCATGG	1 cut(s)	694
BspACI	CCGC	4 cut(s)	85, 703, 799, 907
BspANI	GGCC	6 cut(s)	88, 489, 551, 862, 876, 950
BspCNI	CTCAG	2 cut(s)	22, 370
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	2 cut(s)	700, 989
BspT104I	TTCGAA	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	261, 714
BssECI	CCNNGG	3 cut(s)	694, 802, 871
BssMI	GATC	1 cut(s)	912
BssT1I	CCWWGG	1 cut(s)	694
Bst2UI	CCWGG	3 cut(s)	426, 740, 985
Bst4CI	ACNGT	3 cut(s)	133, 280, 409
Bst6I	CTCTTC	2 cut(s)	427, 738
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	168, 703
BstDEI	CTNAG	2 cut(s)	30, 357
BstDSI	CCRYGG	2 cut(s)	694, 871
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	1 cut(s)	915
BstMAI	GTCTC	1 cut(s)	691
BstMBI	GATC	1 cut(s)	912
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 163, 227, 233, 548, 557, 653, 836
BstNI	CCWGG	3 cut(s)	426, 740, 985
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	3 cut(s)	424, 738, 983
BstSLI	GKGCMC	1 cut(s)	841
BstV1I	GCAGC	6 cut(s)	220, 239, 242, 260, 287, 893
BstXI	CCANNNNNNTGG	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	6 cut(s)	88, 489, 551, 862, 876, 950
BtgI	CCRYGG	2 cut(s)	694, 871
BtgZI	GCGATG	1 cut(s)	318
BtrI	CACGTC	1 cut(s)	814
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	216, 276
Cac8I	GCNNGC	2 cut(s)	168, 703
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	34, 949
CsiI	ACCWGGT	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	4, 629
CviAII	CATG	5 cut(s)	237, 638, 695, 755, 992
CviQI	GTAC	2 cut(s)	4, 629
DdeI	CTNAG	2 cut(s)	30, 357
DpnI	GATC	1 cut(s)	914
DpnII	GATC	1 cut(s)	912
Eam1104I	CTCTTC	2 cut(s)	427, 738
EarI	CTCTTC	2 cut(s)	427, 738
EciI	GGCGGA	1 cut(s)	788
Ecl136II	GAGCTC	1 cut(s)	940
Eco130I	CCWWGG	1 cut(s)	694
Eco147I	AGGCCT	2 cut(s)	489, 862
Eco24I	GRGCYC	2 cut(s)	703, 942
Eco32I	GATATC	1 cut(s)	979
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	940
Eco57I	CTGAAG	2 cut(s)	396, 944
EcoICRI	GAGCTC	1 cut(s)	940
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoRI	GAATTC	1 cut(s)	93
EcoRII	CCWGG	3 cut(s)	424, 738, 983
EcoRV	GATATC	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	694
EcoT22I	ATGCAT	1 cut(s)	186
EcoT38I	GRGCYC	2 cut(s)	703, 942
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	5 cut(s)	240, 641, 698, 758, 995
FalI	AAGNNNNNCTT	2 cut(s)	834, 866
FatI	CATG	5 cut(s)	236, 637, 694, 754, 991
FauI	CCCGC	2 cut(s)	710, 900
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	7 cut(s)	86, 228, 231, 234, 274, 301, 882
FriOI	GRGCYC	2 cut(s)	703, 942
Fsp4HI	GCNGC	7 cut(s)	86, 228, 231, 234, 274, 301, 882
FspBI	CTAG	4 cut(s)	90, 222, 270, 966
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	7 cut(s)	86, 228, 231, 234, 274, 301, 882
GsaI	CCCAGC	3 cut(s)	24, 574, 678
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	6 cut(s)	88, 489, 551, 862, 876, 950
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	5 cut(s)	240, 641, 698, 758, 995
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	3 cut(s)	75, 509, 795
HphI	GGTGA	3 cut(s)	188, 922, 973
Hpy166II	GTNNAC	4 cut(s)	126, 508, 839, 871
Hpy188I	TCNGA	2 cut(s)	360, 514
Hpy188III	TCNNGA	3 cut(s)	337, 638, 688
Hpy8I	GTNNAC	4 cut(s)	126, 508, 839, 871
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	197, 479, 852
HpyCH4III	ACNGT	3 cut(s)	133, 280, 409
HpyCH4IV	ACGT	3 cut(s)	57, 80, 813
HpyCH4V	TGCA	5 cut(s)	184, 236, 276, 647, 839
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 163, 227, 233, 548, 557, 653, 836
HpyF3I	CTNAG	2 cut(s)	30, 357
HpySE526I	ACGT	3 cut(s)	57, 80, 813
Hsp92II	CATG	5 cut(s)	240, 641, 698, 758, 995
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	912
LmnI	GCTCC	5 cut(s)	26, 175, 421, 698, 987
Lsp1109I	GCAGC	6 cut(s)	220, 239, 242, 260, 287, 893
LweI	GCATC	5 cut(s)	193, 295, 403, 547, 634
MabI	ACCWGGT	1 cut(s)	424
MaeI	CTAG	4 cut(s)	90, 222, 270, 966
MaeII	ACGT	3 cut(s)	57, 80, 813
MaeIII	GTNAC	2 cut(s)	140, 239
MalI	GATC	1 cut(s)	914
MboI	GATC	1 cut(s)	912
MboII	GAAGA	5 cut(s)	389, 444, 653, 755, 937
MhlI	GDGCHC	3 cut(s)	703, 841, 942
MluCI	AATT	4 cut(s)	93, 147, 478, 612
MlyI	GAGTC	2 cut(s)	503, 804
MmeI	TCCRAC	1 cut(s)	742
Mph1103I	ATGCAT	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	66
MslI	CAYNNNNRTG	2 cut(s)	248, 642
MspA1I	CMGCKG	2 cut(s)	233, 300
MspR9I	CCNGG	3 cut(s)	426, 740, 985
MvaI	CCWGG	3 cut(s)	426, 740, 985
MwoI	GCNNNNNNNGC	8 cut(s)	26, 163, 227, 233, 548, 557, 653, 836
NcoI	CCATGG	1 cut(s)	694
NdeII	GATC	1 cut(s)	912
NlaIII	CATG	5 cut(s)	240, 641, 698, 758, 995
NlaIV	GGNNCC	2 cut(s)	700, 989
NmeAIII	GCCGAG	1 cut(s)	827
NsiI	ATGCAT	1 cut(s)	186
NspI	RCATGY	1 cut(s)	240
NspV	TTCGAA	1 cut(s)	483
PagI	TCATGA	1 cut(s)	637
PceI	AGGCCT	2 cut(s)	489, 862
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	75
PflFI	GACNNNGTC	1 cut(s)	426
PfoI	TCCNGGA	1 cut(s)	738
PkrI	GCNGC	7 cut(s)	87, 229, 232, 235, 275, 302, 883
PleI	GAGTC	2 cut(s)	503, 803
PpsI	GAGTC	2 cut(s)	503, 803
Psp124BI	GAGCTC	1 cut(s)	942
Psp1406I	AACGTT	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	424, 738, 983
PspFI	CCCAGC	3 cut(s)	20, 570, 674
PspGI	CCWGG	3 cut(s)	424, 738, 983
PspN4I	GGNNCC	2 cut(s)	700, 989
PspPI	GGNCC	2 cut(s)	34, 949
PstNI	CAGNNNCTG	1 cut(s)	233
PsyI	GACNNNGTC	1 cut(s)	426
PvuII	CAGCTG	2 cut(s)	233, 300
RsaI	GTAC	2 cut(s)	5, 630
RsaNI	GTAC	2 cut(s)	4, 629
RseI	CAYNNNNRTG	2 cut(s)	248, 642
SacI	GAGCTC	1 cut(s)	942
SatI	GCNGC	7 cut(s)	86, 228, 231, 234, 274, 301, 882
Sau3AI	GATC	1 cut(s)	912
Sau96I	GGNCC	2 cut(s)	34, 949
SchI	GAGTC	2 cut(s)	503, 804
ScrFI	CCNGG	3 cut(s)	426, 740, 985
SduI	GDGCHC	3 cut(s)	703, 841, 942
SexAI	ACCWGGT	1 cut(s)	424
SfaNI	GCATC	5 cut(s)	193, 295, 403, 547, 634
SfuI	TTCGAA	1 cut(s)	483
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	248, 642
Sse9I	AATT	4 cut(s)	93, 147, 478, 612
SseBI	AGGCCT	2 cut(s)	489, 862
SsiI	CCGC	4 cut(s)	85, 703, 799, 907
SspMI	CTAG	4 cut(s)	90, 222, 270, 966
SstI	GAGCTC	1 cut(s)	942
StuI	AGGCCT	2 cut(s)	489, 862
StyD4I	CCNGG	3 cut(s)	424, 738, 983
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	3 cut(s)	133, 280, 409
TaiI	ACGT	3 cut(s)	60, 83, 816
TaqI	TCGA	7 cut(s)	102, 430, 483, 524, 689, 786, 915
TasI	AATT	4 cut(s)	93, 147, 478, 612
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	75
TscAI	CASTG	2 cut(s)	223, 283
TseI	GCWGC	6 cut(s)	227, 230, 233, 273, 300, 881
TspDTI	ATGAA	2 cut(s)	654, 743
TspGWI	ACGGA	2 cut(s)	399, 903
TspRI	CASTG	2 cut(s)	223, 283
Tth111I	GACNNNGTC	1 cut(s)	426
VneI	GTGCAC	1 cut(s)	837
VpaK11BI	GGWCC	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	743
XapI	RAATTY	3 cut(s)	93, 147, 478
XceI	RCATGY	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	507
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	4 cut(s)	90, 222, 270, 966
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.