Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004706

Physical Location & Seq

Genomic Coordinates Reverse (-)

60674480 .. 60690784

Gene Structure 16305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCATCTGAACCTGTAAATGTCAATGAATTCCAAGAATTGGATAAGCAAGTCCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCGGTTCACGCTAAAAGAGAATGTTGAATCATTTCGCAGAATTATATTAAGGCCTAGAGTTCTGGCAAATGTTAGCTGGATCGATATGTCAACCACTGTATTGGGTTACAAAATCTCAGCGCCTATAATGATTGCTCCTACTTCTAGGCATCAGTTAGCACACCCTGAAGGTCTAATTTGTCTCACAACATTCAAAAATGGGTACACGGCTATTGTCCTAACTGTCGATGTTCCCAGACTTGGTAGAAGAGAGGCAGACATAAAGAACAAGAAAGTATCTTCCCATTTTGTTTTAATGACTGCACCTCAGTTAAAAAACTTCGAAGGCCTAATATCAACTGAACTAGACTCTGATGAAGGATCCAACTTGGAAGCTTTTGTCAGAGCGTCCTATGATGATTCTTTTGTTAGATCAAAAGACGTAATAGAATGGTTAAAATATATTACAAACTTGCCAATTCTAGTCAAGGGTATACTCAGTGATGAAGATGCAAGAAAAGATGTGGAAGTTGGTGTTGCCGGGATTGTTGTCTCTAATCACGGAGCACGACAACTAGACTACACTCCGGCCACTATTTCTGTCCTGGAAGAGGTGGTTCAAGCTGTTGGAAGGAAAGTTCCTGTTCTTTTTTATGGAGGAATACGGCGAGGAACTGATGTCTTCAAGGCATTAGCCCTCGGTGCACAAGCCGTCCTTGTTAGAAGACCTGTTATCTATGGCCTTGCAGCAAATGGAGAAGATGGGGTGAGAAAGGTCATGAAGATGTTGAAGGATGAGTTAGAGCTCAATATGGCTCTCTCTGGCTGTCCTAGTGTTAAGGGTATTACCAGGAGCCACGTGAGAACAGAATGTGATAGACTCCGCTCCCATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

324

Amino Acids

36.07

Weight (kDa)

8.3

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	16 - 93	1.8e-21	FMN-dependent dehydrogenase
FMN_dh	PF01070	98 - 314	1.9e-72	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14130 AT3G14130 AT3G14150 AT3G14150
fragaria_vesca	FvH4_6g35190 FvH4_6g35192
malus_domestica	MD09G1177800.v1.1 MD17G1148900.v1.1
prunus_persica	Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1
pyrus_communis	pycom09g09620 pycom17g14260
rosa_chinensis	RchiOBHm_Chr2g0146451 RchiOBHm_Chr2g0146471 RchiOBHm_Chr2g0146501
rosa_laevigata	RLG00000020202 RLG00000020203
rosa_multiflora	Rmu_co8466583.1_g000001 Rmu_sc0001986.1_g000011 Rmu_sc0024495.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100070 Rroxscaffold_2G00100080
rosa_rugosa	Rorug02G0394600
rosa_samantha	Rh2DG472800 Rh2DG472900
rosa_wichuraiana	Rw2G036840 Rw2G036850 Rw2G036860 Rw2G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	963
AccI	GTMKAC	1 cut(s)	571
AciI	CCGC	1 cut(s)	961
AclWI	GGATC	3 cut(s)	185, 453, 466
AcoI	YGGCCR	1 cut(s)	666
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	937
AfaI	GTAC	2 cut(s)	68, 302
AfiI	CCNNNNNNNGG	3 cut(s)	40, 338, 688
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	5 cut(s)	125, 292, 698, 763, 868
AjnI	CCWGG	2 cut(s)	681, 926
AloI	GAACNNNNNNTCC	2 cut(s)	699, 731
AluBI	AGCT	5 cut(s)	92, 174, 473, 701, 883
AluI	AGCT	5 cut(s)	92, 174, 473, 701, 883
Alw21I	GWGCWC	3 cut(s)	646, 784, 885
Alw26I	GTCTC	2 cut(s)	284, 634
Alw44I	GTGCAC	1 cut(s)	780
AlwI	GGATC	3 cut(s)	185, 453, 466
AoxI	GGCC	4 cut(s)	149, 424, 666, 817
ApaLI	GTGCAC	1 cut(s)	780
ApeKI	GCWGC	1 cut(s)	824
ApoI	RAATTY	1 cut(s)	29
AsiGI	ACCGGT	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	1 cut(s)	856
AsuII	TTCGAA	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	784
BamHI	GGATCC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	885
BbrPI	CACGTG	1 cut(s)	937
BbsI	GAAGAC	2 cut(s)	751, 808
Bbv12I	GWGCWC	3 cut(s)	646, 784, 885
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	836
BccI	CCATC	1 cut(s)	833
BceAI	ACGGC	3 cut(s)	321, 758, 773
BciT130I	CCWGG	2 cut(s)	683, 928
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	2 cut(s)	284, 634
BfaI	CTAG	6 cut(s)	153, 243, 443, 560, 653, 909
BfoI	RGCGCY	1 cut(s)	221
BisI	GCNGC	1 cut(s)	825
BlsI	GCNGC	1 cut(s)	826
Bme1390I	CCNGG	3 cut(s)	619, 683, 928
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	460, 932
BmrFI	CCNGG	3 cut(s)	619, 683, 928
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	3 cut(s)	14, 256, 577
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	2 cut(s)	751, 808
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	619
Bsa29I	ATCGAT	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	937
BsaJI	CCNNGG	1 cut(s)	775
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 338, 688
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	683, 928
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	775
BseGI	GGATG	1 cut(s)	877
BseLI	CCNNNNNNNGG	3 cut(s)	40, 338, 688
BseMII	CTCAG	4 cut(s)	84, 228, 419, 589
BseNI	ACTGG	1 cut(s)	88
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	1 cut(s)	836
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	4 cut(s)	151, 426, 668, 819
BshTI	ACCGGT	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	3 cut(s)	646, 784, 885
BsiSI	CCGG	3 cut(s)	100, 618, 665
BslI	CCNNNNNNNGG	3 cut(s)	40, 338, 688
BsmAI	GTCTC	2 cut(s)	284, 634
BsnI	GGCC	4 cut(s)	151, 426, 668, 819
Bsp119I	TTCGAA	1 cut(s)	420
Bsp1286I	GDGCHC	3 cut(s)	646, 784, 885
Bsp143I	GATC	3 cut(s)	177, 458, 509
BspACI	CCGC	1 cut(s)	961
BspANI	GGCC	4 cut(s)	151, 426, 668, 819
BspCNI	CTCAG	4 cut(s)	85, 227, 418, 588
BspDI	ATCGAT	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	2 cut(s)	460, 932
BspPI	GGATC	3 cut(s)	185, 453, 466
BspT104I	TTCGAA	1 cut(s)	420
BsrBI	CCGCTC	1 cut(s)	963
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	775
BssMI	GATC	3 cut(s)	177, 458, 509
BssNAI	GTATAC	1 cut(s)	572
Bst1107I	GTATAC	1 cut(s)	572
Bst2UI	CCWGG	2 cut(s)	683, 928
Bst4CI	ACNGT	2 cut(s)	196, 322
Bst6I	CTCTTC	2 cut(s)	340, 681
BstBAI	YACGTR	1 cut(s)	937
BstBI	TTCGAA	1 cut(s)	420
BstDEI	CTNAG	4 cut(s)	93, 214, 405, 575
BstENI	CCTNNNNNAGG	1 cut(s)	686
BstF5I	GGATG	1 cut(s)	877
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	180, 461, 512
BstMAI	GTCTC	2 cut(s)	284, 634
BstMBI	GATC	3 cut(s)	177, 458, 509
BstMWI	GCNNNNNNNGC	1 cut(s)	779
BstNI	CCWGG	2 cut(s)	683, 928
BstSCI	CCNGG	3 cut(s)	617, 681, 926
BstSLI	GKGCMC	1 cut(s)	784
BstV1I	GCAGC	1 cut(s)	836
BstV2I	GAAGAC	2 cut(s)	751, 808
BstX2I	RGATCY	1 cut(s)	458
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	458
BstZ17I	GTATAC	1 cut(s)	572
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	4 cut(s)	151, 426, 668, 819
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	877
BtsIMutI	CAGTG	2 cut(s)	192, 583
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	67, 301
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	1 cut(s)	856
CviQI	GTAC	2 cut(s)	67, 301
DdeI	CTNAG	4 cut(s)	93, 214, 405, 575
DpnI	GATC	3 cut(s)	179, 460, 511
DpnII	GATC	3 cut(s)	177, 458, 509
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	2 cut(s)	340, 681
EarI	CTCTTC	2 cut(s)	340, 681
Ecl136II	GAGCTC	1 cut(s)	883
Eco147I	AGGCCT	2 cut(s)	151, 426
Eco24I	GRGCYC	1 cut(s)	885
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	937
EcoICRI	GAGCTC	1 cut(s)	883
EcoNI	CCTNNNNNAGG	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	681, 926
EcoT38I	GRGCYC	1 cut(s)	885
FaeI	CATG	1 cut(s)	859
FalI	AAGNNNNNCTT	2 cut(s)	777, 809
FatI	CATG	1 cut(s)	855
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	825
FokI	GGATG	1 cut(s)	884
FriOI	GRGCYC	1 cut(s)	885
Fsp4HI	GCNGC	1 cut(s)	825
FspBI	CTAG	6 cut(s)	153, 243, 443, 560, 653, 909
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	825
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	4 cut(s)	151, 426, 668, 819
HapII	CCGG	3 cut(s)	100, 618, 665
HgaI	GACGC	1 cut(s)	474
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	859
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	4 cut(s)	125, 446, 497, 957
HpaII	CCGG	3 cut(s)	100, 618, 665
HphI	GGTGA	1 cut(s)	856
Hpy166II	GTNNAC	5 cut(s)	105, 189, 303, 572, 782
Hpy188I	TCNGA	3 cut(s)	10, 451, 482
Hpy188III	TCNNGA	1 cut(s)	856
Hpy8I	GTNNAC	5 cut(s)	105, 189, 303, 572, 782
HpyAV	CCTTC	6 cut(s)	65, 260, 416, 449, 702, 862
HpyCH4III	ACNGT	2 cut(s)	196, 322
HpyCH4IV	ACGT	2 cut(s)	519, 936
HpyCH4V	TGCA	4 cut(s)	401, 590, 782, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	779
HpyF3I	CTNAG	4 cut(s)	93, 214, 405, 575
HpySE526I	ACGT	2 cut(s)	519, 936
Hsp92II	CATG	1 cut(s)	859
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	3 cut(s)	177, 458, 509
LmnI	GCTCC	5 cut(s)	89, 238, 641, 930, 968
Lsp1109I	GCAGC	1 cut(s)	836
LweI	GCATC	3 cut(s)	14, 256, 577
MaeI	CTAG	6 cut(s)	153, 243, 443, 560, 653, 909
MaeII	ACGT	2 cut(s)	519, 936
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	179, 460, 511
MbiI	CCGCTC	1 cut(s)	963
MboI	GATC	3 cut(s)	177, 458, 509
MboII	GAAGA	8 cut(s)	357, 369, 596, 698, 751, 813, 848, 871
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	3 cut(s)	646, 784, 885
MluCI	AATT	5 cut(s)	29, 38, 138, 273, 555
MlyI	GAGTC	2 cut(s)	440, 951
MmeI	TCCRAC	2 cut(s)	486, 685
MnlI	CCTC	7 cut(s)	88, 343, 414, 682, 728, 740, 785
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	6 cut(s)	146, 392, 410, 533, 915, 973
MslI	CAYNNNNRTG	1 cut(s)	860
MspI	CCGG	3 cut(s)	100, 618, 665
MspR9I	CCNGG	3 cut(s)	619, 683, 928
MvaI	CCWGG	2 cut(s)	683, 928
MwoI	GCNNNNNNNGC	1 cut(s)	779
NciI	CCSGG	1 cut(s)	619
NdeII	GATC	3 cut(s)	177, 458, 509
NlaIII	CATG	1 cut(s)	859
NlaIV	GGNNCC	2 cut(s)	460, 932
NspV	TTCGAA	1 cut(s)	420
PagI	TCATGA	1 cut(s)	855
PceI	AGGCCT	2 cut(s)	151, 426
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	125, 497
PflMI	CCANNNNNTGG	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	681
PinAI	ACCGGT	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	826
PleI	GAGTC	2 cut(s)	440, 951
PmaCI	CACGTG	1 cut(s)	937
PmlI	CACGTG	1 cut(s)	937
PpsI	GAGTC	2 cut(s)	440, 951
Ppu21I	YACGTR	1 cut(s)	937
Psp124BI	GAGCTC	1 cut(s)	885
Psp6I	CCWGG	2 cut(s)	681, 926
PspCI	CACGTG	1 cut(s)	937
PspGI	CCWGG	2 cut(s)	681, 926
PspN4I	GGNNCC	2 cut(s)	460, 932
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	458
RsaI	GTAC	2 cut(s)	68, 302
RsaNI	GTAC	2 cut(s)	67, 301
RseI	CAYNNNNRTG	1 cut(s)	860
SacI	GAGCTC	1 cut(s)	885
SaqAI	TTAA	6 cut(s)	146, 392, 410, 533, 915, 973
SatI	GCNGC	1 cut(s)	825
Sau3AI	GATC	3 cut(s)	177, 458, 509
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	2 cut(s)	440, 951
ScrFI	CCNGG	3 cut(s)	619, 683, 928
SduI	GDGCHC	3 cut(s)	646, 784, 885
SfaNI	GCATC	3 cut(s)	14, 256, 577
SfuI	TTCGAA	1 cut(s)	420
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	860
Sse9I	AATT	5 cut(s)	29, 38, 138, 273, 555
SseBI	AGGCCT	2 cut(s)	151, 426
SsiI	CCGC	1 cut(s)	961
SspMI	CTAG	6 cut(s)	153, 243, 443, 560, 653, 909
SstI	GAGCTC	1 cut(s)	885
StuI	AGGCCT	2 cut(s)	151, 426
StyD4I	CCNGG	3 cut(s)	617, 681, 926
TaaI	ACNGT	2 cut(s)	196, 322
TaiI	ACGT	2 cut(s)	522, 939
TaqI	TCGA	3 cut(s)	180, 324, 420
TasI	AATT	5 cut(s)	29, 38, 138, 273, 555
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	125, 497
Tru1I	TTAA	6 cut(s)	146, 392, 410, 533, 915, 973
Tru9I	TTAA	6 cut(s)	146, 392, 410, 533, 915, 973
TscAI	CASTG	2 cut(s)	199, 583
TseI	GCWGC	1 cut(s)	824
TspDTI	ATGAA	4 cut(s)	42, 468, 597, 872
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	2 cut(s)	199, 583
Van91I	CCANNNNNTGG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	780
VpaK11BI	GGWCC	1 cut(s)	97
XagI	CCTNNNNNAGG	1 cut(s)	686
XapI	RAATTY	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	571
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	6 cut(s)	153, 243, 443, 560, 653, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.