Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004706

Physical Location & Seq

Genomic Coordinates Reverse (-)

64143960 .. 64154720

Gene Structure 10761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51623

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCATCTGAACCTGTAAATGTCAATGAATTCCAAGAATTGGCTAAGCAAGTCCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCAGTTCACGCTAAAAGAGAATGTTGAAGCATTTCGCAGAATCACATTAAGGCCTAGAGTTCTGGTAGATGTTAGCAGGATCGATATGTCAACCACTGTATTGGGTTACAAAATCTCAGCGCCTATAATGATTGCTCCTACTTCTAGGCATCAGTTAGCACACCCTGAAGGAGAGGTGGCTACTGCTAGAGCTGCAGCTGCATCCAACACTATAATGATTTTGTCCTACTCTTCTACCTGCACTGTGGAGGAGGTTGCTTCGAGCTGCAATGCTGTTCGGTTCTTCCAATTATATGTTTTCAAGAGACGGGATATATCTGATCAGATAGTTCAAAGAGCTGAAAAAAATGGGTACAAGGCTATTGTACTAACTGTCGATGCTCCCAGACTTGGTAGAAGAGAGGCAGACATAAAGAACAAAATGATTTCAACTCAATTGAAAAACTTCGAAGGCCTAATATCAACTGAACTAGACTCTGATGAAGGATCCAACTTGGAAGCTTATGTCAGAGCGGTCTATGATGATTCTTTGTGCTGGGAGGACGTAATAGGATGGTTAAAATCTATTACAAACTTGCCAATTCTAGTCAAGGGTATCCTCACTCATGAAGATGCAAGAAAGGCTGTGGAAGTTGGTGTTGCCGGGATTGTTGTCTCTAATCATGGAGCACGACAACTAGACTACACACCGGCCACTATTTCTGTCCTGGAAGAGATAATGCGGTCAAAGAGCCTCAACAGCATGGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

283

Amino Acids

31.55

Weight (kDa)

5.42

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	15 - 274	1.2e-90	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14130 AT3G14130 AT3G14150 AT3G14150
fragaria_vesca	FvH4_6g35190 FvH4_6g35192
malus_domestica	MD09G1177800.v1.1 MD17G1148900.v1.1
prunus_persica	Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1
pyrus_communis	pycom09g09620 pycom17g14260
rosa_chinensis	RchiOBHm_Chr2g0146451 RchiOBHm_Chr2g0146471 RchiOBHm_Chr2g0146501
rosa_laevigata	RLG00000020202 RLG00000020203
rosa_multiflora	Rmu_co8466583.1_g000001 Rmu_sc0001986.1_g000011 Rmu_sc0024495.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100070 Rroxscaffold_2G00100080
rosa_rugosa	Rorug02G0394600
rosa_samantha	Rh2DG472800 Rh2DG472900
rosa_wichuraiana	Rw2G036840 Rw2G036850 Rw2G036860 Rw2G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	344
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	611
AciI	CCGC	2 cut(s)	611, 820
AclWI	GGATC	3 cut(s)	185, 579, 592
AcoI	YGGCCR	1 cut(s)	789
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	3 cut(s)	68, 452, 465
AfiI	CCNNNNNNNGG	2 cut(s)	40, 488
AgsI	TTSAA	5 cut(s)	125, 400, 431, 528, 538
AjnI	CCWGG	1 cut(s)	804
AluBI	AGCT	6 cut(s)	92, 290, 296, 363, 437, 599
AluI	AGCT	6 cut(s)	92, 290, 296, 363, 437, 599
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	2 cut(s)	397, 757
AlwI	GGATC	3 cut(s)	185, 579, 592
AoxI	GGCC	3 cut(s)	149, 550, 789
ApeKI	GCWGC	4 cut(s)	290, 293, 296, 363
ApoI	RAATTY	1 cut(s)	29
Asp700I	GAANNNNTTC	2 cut(s)	129, 542
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	742
AsuII	TTCGAA	1 cut(s)	546
AvaII	GGWCC	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	769
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	277, 283, 305, 350
BccI	CCATC	1 cut(s)	645
BciT130I	CCWGG	1 cut(s)	806
BciVI	GTATCC	1 cut(s)	704
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	742
BcoDI	GTCTC	2 cut(s)	397, 757
BfaI	CTAG	6 cut(s)	153, 243, 285, 569, 683, 776
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	704
BisI	GCNGC	4 cut(s)	291, 294, 297, 364
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	4 cut(s)	292, 295, 298, 365
Bme1390I	CCNGG	2 cut(s)	742, 806
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	2 cut(s)	742, 806
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	5 cut(s)	14, 256, 308, 466, 700
BmuI	ACTGGG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	742
Bsa29I	ATCGAT	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 488
Bse118I	RCCGGY	1 cut(s)	787
Bse1I	ACTGG	2 cut(s)	88, 100
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	806
BseCI	ATCGAT	1 cut(s)	180
BseGI	GGATG	2 cut(s)	299, 656
BseLI	CCNNNNNNNGG	2 cut(s)	40, 488
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	84, 228
BseNI	ACTGG	2 cut(s)	88, 100
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	277, 283, 305, 350
BseYI	CCCAGC	1 cut(s)	633
BsgI	GTGCAG	1 cut(s)	322
BshFI	GGCC	3 cut(s)	151, 552, 791
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	2 cut(s)	741, 788
BslI	CCNNNNNNNGG	2 cut(s)	40, 488
BsmAI	GTCTC	2 cut(s)	397, 757
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	151, 552, 791
Bsp119I	TTCGAA	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp143I	GATC	3 cut(s)	177, 418, 584
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	2 cut(s)	611, 820
BspANI	GGCC	3 cut(s)	151, 552, 791
BspCNI	CTCAG	2 cut(s)	85, 227
BspDI	ATCGAT	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	1 cut(s)	586
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	3 cut(s)	185, 579, 592
BspT104I	TTCGAA	1 cut(s)	546
BsrBI	CCGCTC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	787
BsrI	ACTGG	2 cut(s)	88, 100
BssAI	RCCGGY	1 cut(s)	787
BssMI	GATC	3 cut(s)	177, 418, 584
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	3 cut(s)	196, 343, 472
Bst6I	CTCTTC	3 cut(s)	334, 490, 804
BstBI	TTCGAA	1 cut(s)	546
BstDEI	CTNAG	3 cut(s)	45, 93, 214
BstF5I	GGATG	2 cut(s)	299, 656
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	180, 421, 587
BstMAI	GTCTC	2 cut(s)	397, 757
BstMBI	GATC	3 cut(s)	177, 418, 584
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 296, 719, 837
BstNI	CCWGG	1 cut(s)	806
BstSCI	CCNGG	2 cut(s)	740, 804
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	4 cut(s)	277, 283, 305, 350
BstX2I	RGATCY	1 cut(s)	584
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	584
Bsu15I	ATCGAT	1 cut(s)	180
BsuI	GTATCC	1 cut(s)	704
BsuRI	GGCC	3 cut(s)	151, 552, 791
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	299, 656
BtsIMutI	CAGTG	2 cut(s)	192, 339
BveI	ACCTGC	1 cut(s)	344
CciI	TCATGA	1 cut(s)	703
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	787
Cfr13I	GGNCC	1 cut(s)	97
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	67, 451, 464
CviAII	CATG	3 cut(s)	704, 761, 841
CviQI	GTAC	3 cut(s)	67, 451, 464
DdeI	CTNAG	3 cut(s)	45, 93, 214
DpnI	GATC	3 cut(s)	179, 420, 586
DpnII	GATC	3 cut(s)	177, 418, 584
EaeI	YGGCCR	1 cut(s)	789
Eam1104I	CTCTTC	3 cut(s)	334, 490, 804
EarI	CTCTTC	3 cut(s)	334, 490, 804
Eco147I	AGGCCT	2 cut(s)	151, 552
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	804
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	3 cut(s)	707, 764, 844
FatI	CATG	3 cut(s)	703, 760, 840
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	4 cut(s)	291, 294, 297, 364
FokI	GGATG	2 cut(s)	286, 663
Fsp4HI	GCNGC	4 cut(s)	291, 294, 297, 364
FspBI	CTAG	6 cut(s)	153, 243, 285, 569, 683, 776
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	4 cut(s)	291, 294, 297, 364
GsaI	CCCAGC	1 cut(s)	637
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	3 cut(s)	151, 552, 791
HapII	CCGG	2 cut(s)	741, 788
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	707, 764, 844
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	3 cut(s)	138, 572, 623
HpaII	CCGG	2 cut(s)	741, 788
Hpy166II	GTNNAC	2 cut(s)	105, 189
Hpy188I	TCNGA	5 cut(s)	10, 418, 423, 577, 608
Hpy188III	TCNNGA	2 cut(s)	400, 704
Hpy8I	GTNNAC	2 cut(s)	105, 189
HpyAV	CCTTC	4 cut(s)	65, 260, 542, 575
HpyCH4III	ACNGT	3 cut(s)	196, 343, 472
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	5 cut(s)	293, 299, 339, 366, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 296, 719, 837
HpyF3I	CTNAG	3 cut(s)	45, 93, 214
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	3 cut(s)	707, 764, 844
HspAI	GCGC	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	177, 418, 584
LmnI	GCTCC	4 cut(s)	89, 238, 484, 764
Lsp1109I	GCAGC	4 cut(s)	277, 283, 305, 350
LweI	GCATC	5 cut(s)	14, 256, 308, 466, 700
MaeI	CTAG	6 cut(s)	153, 243, 285, 569, 683, 776
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	179, 420, 586
MbiI	CCGCTC	1 cut(s)	611
MboI	GATC	3 cut(s)	177, 418, 584
MboII	GAAGA	5 cut(s)	321, 373, 507, 719, 821
MfeI	CAATTG	1 cut(s)	533
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	769
MluCI	AATT	5 cut(s)	29, 38, 386, 533, 678
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	2 cut(s)	327, 612
MnlI	CCTC	9 cut(s)	88, 265, 340, 343, 493, 631, 707, 838, 842
MroXI	GAANNNNTTC	2 cut(s)	129, 542
MseI	TTAA	3 cut(s)	146, 656, 850
MslI	CAYNNNNRTG	2 cut(s)	311, 708
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	2 cut(s)	741, 788
MspR9I	CCNGG	2 cut(s)	742, 806
MunI	CAATTG	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	806
MwoI	GCNNNNNNNGC	4 cut(s)	290, 296, 719, 837
NciI	CCSGG	1 cut(s)	742
NdeII	GATC	3 cut(s)	177, 418, 584
NlaIII	CATG	3 cut(s)	707, 764, 844
NlaIV	GGNNCC	1 cut(s)	586
NspV	TTCGAA	1 cut(s)	546
PagI	TCATGA	1 cut(s)	703
PceI	AGGCCT	2 cut(s)	151, 552
PdmI	GAANNNNTTC	2 cut(s)	129, 542
PfeI	GAWTC	2 cut(s)	138, 623
PflMI	CCANNNNNTGG	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	804
PkrI	GCNGC	4 cut(s)	292, 295, 298, 365
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	804
PspFI	CCCAGC	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	584
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	3 cut(s)	68, 452, 465
RsaNI	GTAC	3 cut(s)	67, 451, 464
RseI	CAYNNNNRTG	2 cut(s)	311, 708
SaqAI	TTAA	3 cut(s)	146, 656, 850
SatI	GCNGC	4 cut(s)	291, 294, 297, 364
Sau3AI	GATC	3 cut(s)	177, 418, 584
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	742, 806
SduI	GDGCHC	1 cut(s)	769
SfaNI	GCATC	5 cut(s)	14, 256, 308, 466, 700
SfcI	CTRYAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	546
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	2 cut(s)	311, 708
Sse9I	AATT	5 cut(s)	29, 38, 386, 533, 678
SseBI	AGGCCT	2 cut(s)	151, 552
SsiI	CCGC	2 cut(s)	611, 820
SspMI	CTAG	6 cut(s)	153, 243, 285, 569, 683, 776
StuI	AGGCCT	2 cut(s)	151, 552
StyD4I	CCNGG	2 cut(s)	740, 804
TaaI	ACNGT	3 cut(s)	196, 343, 472
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	4 cut(s)	180, 359, 474, 546
TasI	AATT	5 cut(s)	29, 38, 386, 533, 678
TatI	WGTACW	2 cut(s)	66, 463
TfiI	GAWTC	2 cut(s)	138, 623
Tru1I	TTAA	3 cut(s)	146, 656, 850
Tru9I	TTAA	3 cut(s)	146, 656, 850
TscAI	CASTG	2 cut(s)	199, 346
TseI	GCWGC	4 cut(s)	290, 293, 296, 363
TspDTI	ATGAA	3 cut(s)	42, 594, 720
TspRI	CASTG	2 cut(s)	199, 346
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	29
XmnI	GAANNNNTTC	2 cut(s)	129, 542
XspI	CTAG	6 cut(s)	153, 243, 285, 569, 683, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.