RLG00000020202

(S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
62400990 .. 62403422
2433 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020202

Sequence Viewer

Length: 1098 bp
ATGGCATCTGAACCTGTCAATGTGAATGAATTCCAAGAATTGGCTAGGCAAGTACTTCCAAAAATGTACTATGATTACTATAGTGGGGGAGCTGAGGACCAATTCACGCTAAAAGAGAATGTTGAAGCATTTCGCAAAATCACGTTAAGGCCTAGAGTTCTTGTAGATGTTAGCAGAATCGATATGTCAACCACTATATTGGGTTACAAAATCTCAGCACCTATAATGATTGCTCCTAGTGCTATGCATCAGTTAGCACACCCTGAAGGAGAGGTCGCTACTGCTAGAGCAGCAGCTGCATCCAATACCATAATGATTTTGTCCTATAATTCCACCTGCACGGTGGAGGAGGTTGCTTCGAGCTGCAATGATATTCGGTTCTTTCAATTATATATTCACAAGCGACGAGATATATCAGCTCAGATGGTTCAAAGAGCTGAAAAAAATGGATACAAGGCTGTTGTCCTGACTGTTGATGTTCCCAGGCTTGGTAGGAGAGAGGCAGACATAAAGAACAAAATGGTTGCTCCTCAGTTGAAGAACTTTGAAGGTCTAATATCAACTGCACTAGACTCTGATGAAGGATCCAACTTGGAAGCTGTTGCCAGAGCGACCTACGATGATTCTTTGTGCTGGGAGGACGTAATAGGATGGTTAAAATCTATTACAAACTTGCCAATTCTAGTCAAGGGTATACTCACTCATGAAGATGCAAGAAAGGCCGTGGAAGTTGGTGTTGCCGGAATTGTGGTCTCTAATCATGGAGCGCGACAACTAAACTACACTCCTGCCACTATTTCTGTCCTGGAAGAGGTCATTCAAGCTGTTGGAGGGAAAGTTCCTGTTCTTTTTGATGGAGGAATACGACGAGGAACTGATGTCTACAAGGCATTAGCCCTCGGGGCACAAGCCGTCCTTGTTGGAAGGCCTGTTATCTATGGCCTTGCAGCAAATGGTGAAGATGGGGTGAGAAGGGTCATGAAGATGTTGAAGGATGAGTTAGAGCTCACTATGGCTCTCTCTGGCTGTCCTCGTGTTAAGGATATTACCAGGAGCCACGTGAGAACAGAATGTGATAGACTCCGCTCCATGCTTTAA

Protein Analysis

366

Amino Acids

40.17

Weight (kDa)

7.02

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 15 - 355 3.9e-134 FMN-dependent dehydrogenase
NMO PF03060 232 - 344 7.3e-07 Nitronate monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 344
AccB7I CCANNNNNTGG 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 1086
AccI GTMKAC 2 cut(s) 694, 882
AccII CGCG 1 cut(s) 769
AciI CCGC 1 cut(s) 1084
AclWI GGATC 2 cut(s) 579, 592
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 285
AcvI CACGTG 1 cut(s) 1060
AfaI GTAC 2 cut(s) 54, 68
AfiI CCNNNNNNNGG 3 cut(s) 40, 488, 811
AgsI TTSAA 7 cut(s) 125, 386, 431, 538, 548, 821, 991
AjnI CCWGG 3 cut(s) 482, 804, 1049
AloI GAACNNNNNNTCC 2 cut(s) 822, 854
AluBI AGCT 8 cut(s) 92, 296, 363, 419, 437, 599, 824, 1006
AluI AGCT 8 cut(s) 92, 296, 363, 419, 437, 599, 824, 1006
Alw21I GWGCWC 1 cut(s) 1008
Alw26I GTCTC 1 cut(s) 757
AlwI GGATC 2 cut(s) 579, 592
AlwNI CAGNNNCTG 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 899
AoxI GGCC 4 cut(s) 149, 720, 926, 940
ApeKI GCWGC 5 cut(s) 290, 293, 296, 363, 947
ApoI RAATTY 1 cut(s) 29
Asp700I GAANNNNTTC 2 cut(s) 29, 129
AspLEI GCGC 1 cut(s) 769
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 968, 979
AvaI CYCGRG 1 cut(s) 899
AvaII GGWCC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 907
BamHI GGATCC 1 cut(s) 584
BanII GRGCYC 1 cut(s) 1008
BauI CACGAG 1 cut(s) 1032
BbrPI CACGTG 1 cut(s) 1060
Bbv12I GWGCWC 1 cut(s) 1008
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 5 cut(s) 283, 302, 305, 350, 959
BccI CCATC 4 cut(s) 418, 645, 848, 956
BceAI ACGGC 2 cut(s) 707, 896
BciT130I CCWGG 3 cut(s) 484, 806, 1051
BciVI GTATCC 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 757
BfaI CTAG 6 cut(s) 45, 153, 237, 285, 569, 683
BfmI CTRYAG 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 344
BfuI GTATCC 1 cut(s) 443
BglI GCCNNNNNGGC 1 cut(s) 902
BisI GCNGC 5 cut(s) 291, 294, 297, 364, 948
BlsI GCNGC 5 cut(s) 292, 295, 298, 365, 949
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 3 cut(s) 484, 806, 1051
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 899
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 586, 1055
BmrFI CCNGG 3 cut(s) 484, 806, 1051
BmsI GCATC 4 cut(s) 14, 256, 308, 700
Bpu10I CCTNAGC 1 cut(s) 93
Bsa29I ATCGAT 1 cut(s) 180
BsaAI YACGTR 1 cut(s) 1060
BsaI GGTCTC 1 cut(s) 757
BsaJI CCNNGG 3 cut(s) 482, 723, 898
BsaXI ACNNNNNCTCC 2 cut(s) 822, 852
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 488, 811
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 3 cut(s) 484, 806, 1051
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 3 cut(s) 482, 723, 898
BseGI GGATG 3 cut(s) 299, 656, 1000
BseLI CCNNNNNNNGG 3 cut(s) 40, 488, 811
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 4 cut(s) 84, 228, 434, 545
BseRI GAGGAG 2 cut(s) 362, 519
BseSI GKGCMC 1 cut(s) 907
BseXI GCAGC 5 cut(s) 283, 302, 305, 350, 959
BseYI CCCAGC 1 cut(s) 633
BsgI GTGCAG 2 cut(s) 322, 549
Bsh1236I CGCG 1 cut(s) 769
BshFI GGCC 4 cut(s) 151, 722, 928, 942
BshVI ATCGAT 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 1008
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 1 cut(s) 741
BslI CCNNNNNNNGG 3 cut(s) 40, 488, 811
BsmAI GTCTC 1 cut(s) 757
BsnI GGCC 4 cut(s) 151, 722, 928, 942
Bso31I GGTCTC 1 cut(s) 757
BsoBI CYCGRG 1 cut(s) 899
Bsp1286I GDGCHC 2 cut(s) 907, 1008
Bsp143I GATC 1 cut(s) 584
BspACI CCGC 1 cut(s) 1084
BspANI GGCC 4 cut(s) 151, 722, 928, 942
BspCNI CTCAG 4 cut(s) 85, 227, 433, 544
BspDI ATCGAT 1 cut(s) 180
BspFNI CGCG 1 cut(s) 769
BspHI TCATGA 2 cut(s) 703, 978
BspLI GGNNCC 2 cut(s) 586, 1055
BspMI ACCTGC 1 cut(s) 344
BspPI GGATC 2 cut(s) 579, 592
BspTNI GGTCTC 1 cut(s) 757
BsrBI CCGCTC 1 cut(s) 1086
BsrDI GCAATG 1 cut(s) 373
BssECI CCNNGG 3 cut(s) 482, 723, 898
BssMI GATC 1 cut(s) 584
BssNAI GTATAC 1 cut(s) 695
BssSI CACGAG 1 cut(s) 1032
Bst1107I GTATAC 1 cut(s) 695
Bst2BI CACGAG 1 cut(s) 1032
Bst2UI CCWGG 3 cut(s) 484, 806, 1051
Bst4CI ACNGT 2 cut(s) 343, 472
Bst6I CTCTTC 1 cut(s) 804
BstAPI GCANNNNNTGC 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 1060
BstDEI CTNAG 4 cut(s) 93, 214, 420, 531
BstDSI CCRYGG 1 cut(s) 723
BstENI CCTNNNNNAGG 1 cut(s) 809
BstF5I GGATG 3 cut(s) 299, 656, 1000
BstFNI CGCG 1 cut(s) 769
BstHHI GCGC 1 cut(s) 769
BstKTI GATC 1 cut(s) 587
BstMAI GTCTC 1 cut(s) 757
BstMBI GATC 1 cut(s) 584
BstMWI GCNNNNNNNGC 5 cut(s) 239, 290, 296, 719, 902
BstNI CCWGG 3 cut(s) 484, 806, 1051
BstSCI CCNGG 3 cut(s) 482, 804, 1049
BstSFI CTRYAG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 907
BstUI CGCG 1 cut(s) 769
BstV1I GCAGC 5 cut(s) 283, 302, 305, 350, 959
BstX2I RGATCY 1 cut(s) 584
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 584
BstZ17I GTATAC 1 cut(s) 695
Bsu15I ATCGAT 1 cut(s) 180
BsuI GTATCC 1 cut(s) 443
BsuRI GGCC 4 cut(s) 151, 722, 928, 942
BsuTUI ATCGAT 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 723
BtsCI GGATG 3 cut(s) 299, 656, 1000
BveI ACCTGC 1 cut(s) 344
CaiI CAGNNNCTG 1 cut(s) 296
CciI TCATGA 2 cut(s) 703, 978
CfoI GCGC 1 cut(s) 769
Cfr13I GGNCC 1 cut(s) 97
ClaI ATCGAT 1 cut(s) 180
Csp6I GTAC 2 cut(s) 53, 67
CviAII CATG 4 cut(s) 704, 761, 979, 1090
CviQI GTAC 2 cut(s) 53, 67
DdeI CTNAG 4 cut(s) 93, 214, 420, 531
DpnI GATC 1 cut(s) 586
DpnII GATC 1 cut(s) 584
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
Ecl136II GAGCTC 1 cut(s) 1006
Eco147I AGGCCT 2 cut(s) 151, 928
Eco24I GRGCYC 1 cut(s) 1008
Eco31I GGTCTC 1 cut(s) 757
Eco47I GGWCC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 1006
Eco57I CTGAAG 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 1060
Eco88I CYCGRG 1 cut(s) 899
EcoICRI GAGCTC 1 cut(s) 1006
EcoNI CCTNNNNNAGG 1 cut(s) 809
EcoRI GAATTC 1 cut(s) 29
EcoRII CCWGG 3 cut(s) 482, 804, 1049
EcoT22I ATGCAT 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 1008
FaeI CATG 4 cut(s) 707, 764, 982, 1093
FalI AAGNNNNNCTT 2 cut(s) 900, 932
FatI CATG 4 cut(s) 703, 760, 978, 1089
FblI GTMKAC 2 cut(s) 694, 882
Fnu4HI GCNGC 5 cut(s) 291, 294, 297, 364, 948
FokI GGATG 3 cut(s) 286, 663, 1007
FriOI GRGCYC 1 cut(s) 1008
Fsp4HI GCNGC 5 cut(s) 291, 294, 297, 364, 948
FspBI CTAG 6 cut(s) 45, 153, 237, 285, 569, 683
GlaI GCGC 1 cut(s) 768
GluI GCNGC 5 cut(s) 291, 294, 297, 364, 948
GsaI CCCAGC 1 cut(s) 637
HaeIII GGCC 4 cut(s) 151, 722, 928, 942
HapII CCGG 1 cut(s) 741
HhaI GCGC 1 cut(s) 769
Hin1II CATG 4 cut(s) 707, 764, 982, 1093
Hin6I GCGC 1 cut(s) 767
HinP1I GCGC 1 cut(s) 767
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 4 cut(s) 177, 572, 623, 1080
HpaII CCGG 1 cut(s) 741
HphI GGTGA 2 cut(s) 968, 979
Hpy166II GTNNAC 3 cut(s) 189, 695, 883
Hpy188I TCNGA 3 cut(s) 10, 423, 577
Hpy188III TCNNGA 3 cut(s) 466, 704, 979
Hpy8I GTNNAC 3 cut(s) 189, 695, 883
Hpy99I CGWCG 2 cut(s) 408, 870
HpyAV CCTTC 6 cut(s) 260, 542, 575, 918, 966, 985
HpyCH4III ACNGT 2 cut(s) 343, 472
HpyCH4IV ACGT 3 cut(s) 143, 642, 1059
HpyCH4V TGCA 7 cut(s) 247, 299, 339, 366, 566, 713, 947
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 290, 296, 719, 902
HpyF3I CTNAG 4 cut(s) 93, 214, 420, 531
HpySE526I ACGT 3 cut(s) 143, 642, 1059
Hsp92II CATG 4 cut(s) 707, 764, 982, 1093
HspAI GCGC 1 cut(s) 767
Kzo9I GATC 1 cut(s) 584
LmnI GCTCC 6 cut(s) 89, 238, 532, 764, 1053, 1091
Lsp1109I GCAGC 5 cut(s) 283, 302, 305, 350, 959
LweI GCATC 4 cut(s) 14, 256, 308, 700
MaeI CTAG 6 cut(s) 45, 153, 237, 285, 569, 683
MaeII ACGT 3 cut(s) 143, 642, 1059
MaeIII GTNAC 1 cut(s) 203
MalI GATC 1 cut(s) 586
MbiI CCGCTC 1 cut(s) 1086
MboI GATC 1 cut(s) 584
MboII GAAGA 5 cut(s) 550, 719, 821, 971, 994
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 2 cut(s) 907, 1008
MluCI AATT 7 cut(s) 29, 38, 101, 328, 386, 678, 744
MlyI GAGTC 2 cut(s) 566, 1074
MmeI TCCRAC 3 cut(s) 612, 808, 901
Mph1103I ATGCAT 1 cut(s) 249
MroXI GAANNNNTTC 2 cut(s) 29, 129
MseI TTAA 4 cut(s) 146, 656, 1038, 1096
MslI CAYNNNNRTG 2 cut(s) 708, 983
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 741
MspR9I CCNGG 3 cut(s) 484, 806, 1051
MvaI CCWGG 3 cut(s) 484, 806, 1051
MvnI CGCG 1 cut(s) 769
MwoI GCNNNNNNNGC 5 cut(s) 239, 290, 296, 719, 902
NdeII GATC 1 cut(s) 584
NlaIII CATG 4 cut(s) 707, 764, 982, 1093
NlaIV GGNNCC 2 cut(s) 586, 1055
NsiI ATGCAT 1 cut(s) 249
PagI TCATGA 2 cut(s) 703, 978
PaqCI CACCTGC 1 cut(s) 344
PceI AGGCCT 2 cut(s) 151, 928
PdmI GAANNNNTTC 2 cut(s) 29, 129
PfeI GAWTC 2 cut(s) 177, 623
PflMI CCANNNNNTGG 1 cut(s) 40
PfoI TCCNGGA 1 cut(s) 804
PkrI GCNGC 5 cut(s) 292, 295, 298, 365, 949
PleI GAGTC 2 cut(s) 566, 1074
PmaCI CACGTG 1 cut(s) 1060
PmlI CACGTG 1 cut(s) 1060
PpsI GAGTC 2 cut(s) 566, 1074
Ppu21I YACGTR 1 cut(s) 1060
Psp124BI GAGCTC 1 cut(s) 1008
Psp6I CCWGG 3 cut(s) 482, 804, 1049
PspCI CACGTG 1 cut(s) 1060
PspFI CCCAGC 1 cut(s) 633
PspGI CCWGG 3 cut(s) 482, 804, 1049
PspN4I GGNNCC 2 cut(s) 586, 1055
PspPI GGNCC 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 2 cut(s) 54, 68
RsaNI GTAC 2 cut(s) 53, 67
RseI CAYNNNNRTG 2 cut(s) 708, 983
SacI GAGCTC 1 cut(s) 1008
SaqAI TTAA 4 cut(s) 146, 656, 1038, 1096
SatI GCNGC 5 cut(s) 291, 294, 297, 364, 948
Sau3AI GATC 1 cut(s) 584
Sau96I GGNCC 1 cut(s) 97
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 2 cut(s) 566, 1074
ScrFI CCNGG 3 cut(s) 484, 806, 1051
SduI GDGCHC 2 cut(s) 907, 1008
SfaNI GCATC 4 cut(s) 14, 256, 308, 700
SfcI CTRYAG 1 cut(s) 79
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 708, 983
Sse9I AATT 7 cut(s) 29, 38, 101, 328, 386, 678, 744
SseBI AGGCCT 2 cut(s) 151, 928
SsiI CCGC 1 cut(s) 1084
SspMI CTAG 6 cut(s) 45, 153, 237, 285, 569, 683
SstI GAGCTC 1 cut(s) 1008
StuI AGGCCT 2 cut(s) 151, 928
StyD4I CCNGG 3 cut(s) 482, 804, 1049
TaaI ACNGT 2 cut(s) 343, 472
TaiI ACGT 3 cut(s) 146, 645, 1062
TaqI TCGA 2 cut(s) 180, 359
TasI AATT 7 cut(s) 29, 38, 101, 328, 386, 678, 744
TatI WGTACW 2 cut(s) 52, 66
TfiI GAWTC 2 cut(s) 177, 623
Tru1I TTAA 4 cut(s) 146, 656, 1038, 1096
Tru9I TTAA 4 cut(s) 146, 656, 1038, 1096
TseI GCWGC 5 cut(s) 290, 293, 296, 363, 947
TspDTI ATGAA 4 cut(s) 42, 594, 720, 995
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 97
XagI CCTNNNNNAGG 1 cut(s) 809
XapI RAATTY 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XmiI GTMKAC 2 cut(s) 694, 882
XmnI GAANNNNTTC 2 cut(s) 29, 129
XspI CTAG 6 cut(s) 45, 153, 237, 285, 569, 683
ZrmI AGTACT 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.