Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8466583.1

Orthogroup ID

OG0004706

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1584

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8466583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 706 bp

atggcatctgaacctgtcaatgtgaatgaattccaagaattggctaggcaagtacttccaaaaatgtactatgattactatagtgggggagctgaggaccaattcacgctaaaagagaatgttgaagcatttcgcaaattcacgttaaggcctagagttcttgtagatgtgagcagaatcaatatgtcaaccactatattgggttacaaagtctcagcacctataatgattgctcctagtgctatgcatcagttagcacaccctgaaggagaggtcgctactgctagagcagcagctgcatccaataccataatgattttgtcctacaattctacctgcacggtggaggaggttgcttcgagctgcaatgctattcggttctttcaattatatattcacaagagacgagatatatcggctcagatggttcaaagagctgaaaaaaatggatacaaggctattgtcctgactgttgatgttcccaggcttggtaggagagaggcagacataaagaacaaaatggttgctcctcagttgaagaactttgaaggtctaatatcaactgcactagactctgatgaaggatccaacttggaagctgttgccagagcgacctatgatgattctttgtgctgggaggacgtaataggatggttaaaatctattacaaacttgccaattctagtcaagggtatactcactcatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

235

Amino Acids

26.22

Weight (kDa)

6.44

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14130 AT3G14130 AT3G14150 AT3G14150
fragaria_vesca	FvH4_6g35190 FvH4_6g35192
malus_domestica	MD09G1177800.v1.1 MD17G1148900.v1.1
prunus_persica	Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1 Prupe.3G037200_v2.0.a1
pyrus_communis	pycom09g09620 pycom17g14260
rosa_chinensis	RchiOBHm_Chr2g0146451 RchiOBHm_Chr2g0146471 RchiOBHm_Chr2g0146501
rosa_laevigata	RLG00000020202 RLG00000020203
rosa_multiflora	Rmu_co8466583.1_g000001 Rmu_sc0001986.1_g000011 Rmu_sc0024495.1_g000001
rosa_roxburghii	Rroxscaffold_2G00100070 Rroxscaffold_2G00100080
rosa_rugosa	Rorug02G0394600
rosa_samantha	Rh2DG472800 Rh2DG472900
rosa_wichuraiana	Rw2G036840 Rw2G036850 Rw2G036860 Rw2G036870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	344
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	694
AclWI	GGATC	2 cut(s)	579, 592
AcsI	RAATTY	2 cut(s)	29, 137
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	2 cut(s)	54, 68
AfiI	CCNNNNNNNGG	2 cut(s)	40, 488
AgsI	TTSAA	5 cut(s)	125, 386, 431, 538, 548
AjnI	CCWGG	1 cut(s)	482
AluBI	AGCT	5 cut(s)	92, 296, 363, 437, 599
AluI	AGCT	5 cut(s)	92, 296, 363, 437, 599
Alw26I	GTCTC	2 cut(s)	217, 397
AlwI	GGATC	2 cut(s)	579, 592
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	290, 293, 296, 363
ApoI	RAATTY	2 cut(s)	29, 137
Asp700I	GAANNNNTTC	2 cut(s)	29, 129
AspS9I	GGNCC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	584
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	4 cut(s)	283, 302, 305, 350
BccI	CCATC	2 cut(s)	418, 645
BciT130I	CCWGG	1 cut(s)	484
BciVI	GTATCC	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	217, 397
BfaI	CTAG	6 cut(s)	45, 153, 237, 285, 569, 683
BfmI	CTRYAG	1 cut(s)	79
BfuAI	ACCTGC	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	443
BisI	GCNGC	4 cut(s)	291, 294, 297, 364
BlsI	GCNGC	4 cut(s)	292, 295, 298, 365
BmcAI	AGTACT	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	484
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	1 cut(s)	484
BmsI	GCATC	3 cut(s)	14, 256, 308
Bpu10I	CCTNAGC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 488
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	2 cut(s)	299, 656
BseLI	CCNNNNNNNGG	2 cut(s)	40, 488
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	4 cut(s)	84, 228, 434, 545
BseRI	GAGGAG	2 cut(s)	362, 519
BseXI	GCAGC	4 cut(s)	283, 302, 305, 350
BseYI	CCCAGC	1 cut(s)	633
BsgI	GTGCAG	2 cut(s)	322, 549
BshFI	GGCC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	40, 488
BsmAI	GTCTC	2 cut(s)	217, 397
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	584
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	4 cut(s)	85, 227, 433, 544
BspLI	GGNNCC	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	579, 592
BsrDI	GCAATG	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	1 cut(s)	584
BssNAI	GTATAC	1 cut(s)	695
Bst1107I	GTATAC	1 cut(s)	695
Bst2UI	CCWGG	1 cut(s)	484
Bst4CI	ACNGT	2 cut(s)	343, 472
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstDEI	CTNAG	4 cut(s)	93, 214, 420, 531
BstF5I	GGATG	2 cut(s)	299, 656
BstKTI	GATC	1 cut(s)	587
BstMAI	GTCTC	2 cut(s)	217, 397
BstMBI	GATC	1 cut(s)	584
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 290, 296
BstNI	CCWGG	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	4 cut(s)	283, 302, 305, 350
BstX2I	RGATCY	1 cut(s)	584
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	584
BstZ17I	GTATAC	1 cut(s)	695
BsuI	GTATCC	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	299, 656
BveI	ACCTGC	1 cut(s)	344
CaiI	CAGNNNCTG	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	53, 67
CviAII	CATG	1 cut(s)	704
CviQI	GTAC	2 cut(s)	53, 67
DdeI	CTNAG	4 cut(s)	93, 214, 420, 531
DpnI	GATC	1 cut(s)	586
DpnII	GATC	1 cut(s)	584
Eco147I	AGGCCT	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	482
EcoT22I	ATGCAT	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	694
Fnu4HI	GCNGC	4 cut(s)	291, 294, 297, 364
FokI	GGATG	2 cut(s)	286, 663
Fsp4HI	GCNGC	4 cut(s)	291, 294, 297, 364
FspBI	CTAG	6 cut(s)	45, 153, 237, 285, 569, 683
GluI	GCNGC	4 cut(s)	291, 294, 297, 364
GsaI	CCCAGC	1 cut(s)	637
HaeIII	GGCC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	3 cut(s)	177, 572, 623
Hpy166II	GTNNAC	2 cut(s)	189, 695
Hpy188I	TCNGA	3 cut(s)	10, 423, 577
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	2 cut(s)	189, 695
HpyAV	CCTTC	3 cut(s)	260, 542, 575
HpyCH4III	ACNGT	2 cut(s)	343, 472
HpyCH4IV	ACGT	2 cut(s)	143, 642
HpyCH4V	TGCA	5 cut(s)	247, 299, 339, 366, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 290, 296
HpyF3I	CTNAG	4 cut(s)	93, 214, 420, 531
HpySE526I	ACGT	2 cut(s)	143, 642
Kzo9I	GATC	1 cut(s)	584
LmnI	GCTCC	3 cut(s)	89, 238, 532
LpnPI	CCDG	8 cut(s)	27, 276, 349, 469, 479, 496, 619, 619
Lsp1109I	GCAGC	4 cut(s)	283, 302, 305, 350
LweI	GCATC	3 cut(s)	14, 256, 308
MaeI	CTAG	6 cut(s)	45, 153, 237, 285, 569, 683
MaeII	ACGT	2 cut(s)	143, 642
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	586
MboI	GATC	1 cut(s)	584
MboII	GAAGA	1 cut(s)	550
MflI	RGATCY	1 cut(s)	584
MluCI	AATT	7 cut(s)	29, 38, 101, 137, 328, 386, 678
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	612
MnlI	CCTC	7 cut(s)	88, 265, 340, 343, 493, 540, 631
Mph1103I	ATGCAT	1 cut(s)	249
MroXI	GAANNNNTTC	2 cut(s)	29, 129
MseI	TTAA	2 cut(s)	146, 656
MspA1I	CMGCKG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	3 cut(s)	239, 290, 296
NdeII	GATC	1 cut(s)	584
NlaIV	GGNNCC	1 cut(s)	586
NsiI	ATGCAT	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	151
PdmI	GAANNNNTTC	2 cut(s)	29, 129
PfeI	GAWTC	2 cut(s)	177, 623
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	4 cut(s)	292, 295, 298, 365
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
Psp6I	CCWGG	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	584
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	2 cut(s)	54, 68
RsaNI	GTAC	2 cut(s)	53, 67
SaqAI	TTAA	2 cut(s)	146, 656
SatI	GCNGC	4 cut(s)	291, 294, 297, 364
Sau3AI	GATC	1 cut(s)	584
Sau96I	GGNCC	1 cut(s)	97
ScaI	AGTACT	1 cut(s)	54
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	484
SfaNI	GCATC	3 cut(s)	14, 256, 308
SfcI	CTRYAG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	7 cut(s)	29, 38, 101, 137, 328, 386, 678
SseBI	AGGCCT	1 cut(s)	151
SspMI	CTAG	6 cut(s)	45, 153, 237, 285, 569, 683
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	482
TaaI	ACNGT	2 cut(s)	343, 472
TaiI	ACGT	2 cut(s)	146, 645
TaqI	TCGA	1 cut(s)	359
TasI	AATT	7 cut(s)	29, 38, 101, 137, 328, 386, 678
TatI	WGTACW	2 cut(s)	52, 66
TfiI	GAWTC	2 cut(s)	177, 623
Tru1I	TTAA	2 cut(s)	146, 656
Tru9I	TTAA	2 cut(s)	146, 656
TseI	GCWGC	4 cut(s)	290, 293, 296, 363
TspDTI	ATGAA	2 cut(s)	42, 594
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	2 cut(s)	29, 137
XmiI	GTMKAC	1 cut(s)	694
XmnI	GAANNNNTTC	2 cut(s)	29, 129
XspI	CTAG	6 cut(s)	45, 153, 237, 285, 569, 683
ZrmI	AGTACT	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.