Prupe.3G037200_v2.0.a1

(S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
2680821 .. 2683870
3050 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G037200.2

Sequence Viewer

Length: 1116 bp
ATGTTTATGTTCCCAGGAGAAATGGCCTCCGAACCTGTCAATGTGAATGAGTTCCAAGAATTGGCTAGGCAAGCCCTTCCAAAAATGTACTATGATTTCTATACTGGGGGAGCTGAGGACCAGCACACGCTAAAAGAGAATGTTGCAGCATTTCGCCGAATCATGTTGCGGCCTAGAGTTCTTGTAGATGTTAGTAGAATTGATATGTCAACTACTATATTGGGTTACAACATCTCAGCGCCTATAATGATTGCTCCTACAGCTATGCATCAGTTAGCACACCCTGAAGGAGAGGTTGCCACTGCTAGAGCAGCAGCTGCGTGCAACACCATAATGATTTTGTCGAACATGTCTACCTGCACCGTGGAGGAGGTTGCTTCCAGCTGCAATGCAGTTCGGTTCTTTCAATTATATGTTCTCAAGAGACGAGATATATCAGCTCAGATAGTTCACAGAGTTGAAAAAAATGGTTACAAGGCTATTGTCTTAACTGTTGATACTCCCAGACTTGGTCGAAGAGAGGCAGACATAAAGAATAGAATGGTTGCACCTCAGTTGAGGAATTTTGAAGGCCTTTTATCAACTGAAGTAGACACTGTGAGATCAAACTTGGAAGCTTTGATCAAAGGAATCTATGATACTTCTTTGAGCTGGGAGGACATAGGATGGTTGAAATCTATTACAAACTTGCCAATTCTAATCAAGGGGGTACTCACTCATGAGAATGCAAGAAAGGCTGTGGAAGTAGGTGTTGCTGGGATTGTCGTCTCTAATCATGGAGCCCGTCAATTGGATTATACACCTGCCACTATTTCTGTCCTGGAAGAGGTGGTTCATGCTGTTGGAGGAAGAGTTCCCGTTCTTTTTGACGGAGGAGTACGGCGAGGAACAGATGTCTTCAAGGCATTAGCTCTTGGTGCACAAGCTGTCCTTGTTGGAAGGCCTGTTGTCTATGGCCTTGCAGCAAACGGAGAACGTGGAGTGAGACGAGTCATCGAAATGCTCAAGGATGAGTTTGAGCTCACTATGGCCCTTTCTGGCTGCCCCAGTGTTAAGGATATTACCAGGAGCCATGTGACAACTACAGAATTTGATAAGCCACGTTCGATGCTATAA

Protein Analysis

372

Amino Acids

40.87

Weight (kDa)

7.72

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 811
Acc36I ACCTGC 2 cut(s) 365, 811
AccB7I CCANNNNNTGG 1 cut(s) 61
AccI GTMKAC 2 cut(s) 353, 591
AciI CCGC 1 cut(s) 169
AcsI RAATTY 2 cut(s) 562, 1088
AcuI CTGAAG 2 cut(s) 306, 606
AfaI GTAC 3 cut(s) 89, 711, 879
AfiI CCNNNNNNNGG 4 cut(s) 61, 509, 790, 826
AflIII ACRYGT 1 cut(s) 348
AgsI TTSAA 5 cut(s) 407, 461, 569, 673, 901
AjnI CCWGG 3 cut(s) 13, 819, 1064
AloI GAACNNNNNNTCC 2 cut(s) 837, 869
Alw21I GWGCWC 2 cut(s) 922, 1023
Alw26I GTCTC 3 cut(s) 418, 772, 979
Alw44I GTGCAC 1 cut(s) 918
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 6 cut(s) 24, 170, 571, 941, 955, 1029
ApaLI GTGCAC 1 cut(s) 918
ApeKI GCWGC 7 cut(s) 146, 311, 314, 317, 384, 962, 1041
ApoI RAATTY 2 cut(s) 562, 1088
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 118, 1030
AvaII GGWCC 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 922
BanII GRGCYC 2 cut(s) 784, 1023
BbsI GAAGAC 1 cut(s) 889
Bbv12I GWGCWC 2 cut(s) 922, 1023
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 7 cut(s) 158, 304, 323, 326, 371, 974, 1028
BccI CCATC 1 cut(s) 660
BceAI ACGGC 1 cut(s) 896
BciT130I CCWGG 3 cut(s) 15, 821, 1066
BclI TGATCA 1 cut(s) 621
BcoDI GTCTC 3 cut(s) 418, 772, 979
BfaI CTAG 3 cut(s) 66, 174, 306
BfmI CTRYAG 2 cut(s) 258, 1083
BfoI RGCGCY 1 cut(s) 242
BfuAI ACCTGC 2 cut(s) 365, 811
BisI GCNGC 8 cut(s) 147, 170, 312, 315, 318, 385, 963, 1042
BlsI GCNGC 8 cut(s) 148, 171, 313, 316, 319, 386, 964, 1043
Bme1390I CCNGG 3 cut(s) 15, 821, 1066
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 118, 1030
BmiI GGNNCC 2 cut(s) 781, 1070
BmrFI CCNGG 3 cut(s) 15, 821, 1066
BmrI ACTGGG 2 cut(s) 114, 1041
BmsI GCATC 2 cut(s) 277, 1098
BmuI ACTGGG 2 cut(s) 114, 1041
BpiI GAAGAC 1 cut(s) 889
Bpu10I CCTNAGC 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 404, 989
BsaJI CCNNGG 2 cut(s) 13, 363
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 509, 790, 826
Bse1I ACTGG 2 cut(s) 109, 1047
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 3 cut(s) 15, 821, 1066
BseDI CCNNGG 2 cut(s) 13, 363
BseGI GGATG 2 cut(s) 671, 1015
BseLI CCNNNNNNNGG 4 cut(s) 61, 509, 790, 826
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 4 cut(s) 105, 249, 455, 566
BseNI ACTGG 2 cut(s) 109, 1047
BseRI GAGGAG 2 cut(s) 383, 888
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 7 cut(s) 158, 304, 323, 326, 371, 974, 1028
BseYI CCCAGC 2 cut(s) 651, 755
BsgI GTGCAG 1 cut(s) 343
BshFI GGCC 6 cut(s) 26, 172, 573, 943, 957, 1031
BsiHKAI GWGCWC 2 cut(s) 922, 1023
BslI CCNNNNNNNGG 4 cut(s) 61, 509, 790, 826
BsmAI GTCTC 3 cut(s) 418, 772, 979
BsmBI CGTCTC 3 cut(s) 418, 772, 979
BsmI GAATGC 1 cut(s) 730
BsnI GGCC 6 cut(s) 26, 172, 573, 943, 957, 1031
Bsp1286I GDGCHC 3 cut(s) 784, 922, 1023
Bsp143I GATC 2 cut(s) 602, 621
BspACI CCGC 1 cut(s) 169
BspANI GGCC 6 cut(s) 26, 172, 573, 943, 957, 1031
BspCNI CTCAG 4 cut(s) 106, 248, 454, 565
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 2 cut(s) 781, 1070
BspMI ACCTGC 2 cut(s) 365, 811
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 2 cut(s) 109, 1047
BssECI CCNNGG 2 cut(s) 13, 363
BssMI GATC 2 cut(s) 602, 621
Bst2UI CCWGG 3 cut(s) 15, 821, 1066
Bst4CI ACNGT 3 cut(s) 364, 493, 598
Bst6I CTCTTC 3 cut(s) 511, 819, 844
BstAPI GCANNNNNTGC 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 72, 322
BstDEI CTNAG 4 cut(s) 114, 235, 441, 552
BstDSI CCRYGG 1 cut(s) 363
BstENI CCTNNNNNAGG 1 cut(s) 824
BstF5I GGATG 2 cut(s) 671, 1015
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 2 cut(s) 605, 624
BstMAI GTCTC 3 cut(s) 418, 772, 979
BstMBI GATC 2 cut(s) 602, 621
BstMWI GCNNNNNNNGC 6 cut(s) 71, 260, 311, 317, 734, 917
BstNI CCWGG 3 cut(s) 15, 821, 1066
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 3 cut(s) 13, 819, 1064
BstSFI CTRYAG 2 cut(s) 258, 1083
BstSLI GKGCMC 1 cut(s) 922
BstV1I GCAGC 7 cut(s) 158, 304, 323, 326, 371, 974, 1028
BstV2I GAAGAC 1 cut(s) 889
BsuRI GGCC 6 cut(s) 26, 172, 573, 943, 957, 1031
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 2 cut(s) 671, 1015
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 3 cut(s) 300, 594, 1054
BveI ACCTGC 2 cut(s) 365, 811
Cac8I GCNNGC 2 cut(s) 72, 322
CaiI CAGNNNCTG 1 cut(s) 317
CciI TCATGA 1 cut(s) 718
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 2 cut(s) 118, 1030
Csp6I GTAC 3 cut(s) 88, 710, 878
CviAII CATG 6 cut(s) 163, 349, 719, 776, 836, 1073
CviQI GTAC 3 cut(s) 88, 710, 878
DdeI CTNAG 4 cut(s) 114, 235, 441, 552
DpnI GATC 2 cut(s) 604, 623
DpnII GATC 2 cut(s) 602, 621
Eam1104I CTCTTC 3 cut(s) 511, 819, 844
EarI CTCTTC 3 cut(s) 511, 819, 844
Ecl136II GAGCTC 1 cut(s) 1021
Eco147I AGGCCT 2 cut(s) 573, 943
Eco24I GRGCYC 2 cut(s) 784, 1023
Eco47I GGWCC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 2 cut(s) 306, 606
EcoICRI GAGCTC 1 cut(s) 1021
EcoNI CCTNNNNNAGG 1 cut(s) 824
EcoRII CCWGG 3 cut(s) 13, 819, 1064
EcoT22I ATGCAT 1 cut(s) 270
EcoT38I GRGCYC 2 cut(s) 784, 1023
Esp3I CGTCTC 3 cut(s) 418, 772, 979
FaeI CATG 6 cut(s) 166, 352, 722, 779, 839, 1076
FalI AAGNNNNNCTT 2 cut(s) 915, 947
FatI CATG 6 cut(s) 162, 348, 718, 775, 835, 1072
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 2 cut(s) 353, 591
Fnu4HI GCNGC 8 cut(s) 147, 170, 312, 315, 318, 385, 963, 1042
FokI GGATG 2 cut(s) 678, 1022
FriOI GRGCYC 2 cut(s) 784, 1023
Fsp4HI GCNGC 8 cut(s) 147, 170, 312, 315, 318, 385, 963, 1042
FspBI CTAG 3 cut(s) 66, 174, 306
GlaI GCGC 1 cut(s) 240
GluI GCNGC 8 cut(s) 147, 170, 312, 315, 318, 385, 963, 1042
GsaI CCCAGC 2 cut(s) 655, 759
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 6 cut(s) 26, 172, 573, 943, 957, 1031
HhaI GCGC 1 cut(s) 241
Hin1II CATG 6 cut(s) 166, 352, 722, 779, 839, 1076
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 615
HinfI GANTC 3 cut(s) 159, 630, 990
Hpy166II GTNNAC 5 cut(s) 210, 354, 451, 592, 920
Hpy188I TCNGA 2 cut(s) 31, 444
Hpy188III TCNNGA 2 cut(s) 421, 719
Hpy8I GTNNAC 5 cut(s) 210, 354, 451, 592, 920
HpyAV CCTTC 4 cut(s) 86, 281, 563, 933
HpyCH4III ACNGT 3 cut(s) 364, 493, 598
HpyCH4IV ACGT 2 cut(s) 976, 1102
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 260, 311, 317, 734, 917
HpyF3I CTNAG 4 cut(s) 114, 235, 441, 552
HpySE526I ACGT 2 cut(s) 976, 1102
Hsp92II CATG 6 cut(s) 166, 352, 722, 779, 839, 1076
HspAI GCGC 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 2 cut(s) 602, 621
LmnI GCTCC 4 cut(s) 110, 259, 779, 1068
Lsp1109I GCAGC 7 cut(s) 158, 304, 323, 326, 371, 974, 1028
LweI GCATC 2 cut(s) 277, 1098
MaeI CTAG 3 cut(s) 66, 174, 306
MaeII ACGT 2 cut(s) 976, 1102
MaeIII GTNAC 3 cut(s) 224, 470, 1075
MalI GATC 2 cut(s) 604, 623
MboI GATC 2 cut(s) 602, 621
MboII GAAGA 4 cut(s) 528, 836, 861, 889
MfeI CAATTG 1 cut(s) 788
MhlI GDGCHC 3 cut(s) 784, 922, 1023
MluCI AATT 7 cut(s) 59, 198, 407, 562, 693, 788, 1088
MlyI GAGTC 1 cut(s) 999
MmeI TCCRAC 2 cut(s) 823, 916
Mph1103I ATGCAT 1 cut(s) 270
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 2 cut(s) 488, 1053
MslI CAYNNNNRTG 3 cut(s) 332, 723, 998
MspA1I CMGCKG 2 cut(s) 317, 384
MspR9I CCNGG 3 cut(s) 15, 821, 1066
MunI CAATTG 1 cut(s) 788
Mva1269I GAATGC 1 cut(s) 730
MvaI CCWGG 3 cut(s) 15, 821, 1066
MwoI GCNNNNNNNGC 6 cut(s) 71, 260, 311, 317, 734, 917
NdeII GATC 2 cut(s) 602, 621
NlaIII CATG 6 cut(s) 166, 352, 722, 779, 839, 1076
NlaIV GGNNCC 2 cut(s) 781, 1070
NmuCI GTSAC 1 cut(s) 1075
NsiI ATGCAT 1 cut(s) 270
NspI RCATGY 1 cut(s) 352
PagI TCATGA 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 811
PceI AGGCCT 2 cut(s) 573, 943
PciI ACATGT 1 cut(s) 348
PctI GAATGC 1 cut(s) 730
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 159, 630
PflFI GACNNNGTC 1 cut(s) 510
PflMI CCANNNNNTGG 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 819
PkrI GCNGC 8 cut(s) 148, 171, 313, 316, 319, 386, 964, 1043
PleI GAGTC 1 cut(s) 998
PpsI GAGTC 1 cut(s) 998
PscI ACATGT 1 cut(s) 348
Psp124BI GAGCTC 1 cut(s) 1023
Psp6I CCWGG 3 cut(s) 13, 819, 1064
PspFI CCCAGC 2 cut(s) 651, 755
PspGI CCWGG 3 cut(s) 13, 819, 1064
PspN4I GGNNCC 2 cut(s) 781, 1070
PspPI GGNCC 2 cut(s) 118, 1030
PstNI CAGNNNCTG 1 cut(s) 317
PsyI GACNNNGTC 1 cut(s) 510
PvuII CAGCTG 2 cut(s) 317, 384
RsaI GTAC 3 cut(s) 89, 711, 879
RsaNI GTAC 3 cut(s) 88, 710, 878
RseI CAYNNNNRTG 3 cut(s) 332, 723, 998
SacI GAGCTC 1 cut(s) 1023
SaqAI TTAA 2 cut(s) 488, 1053
SatI GCNGC 8 cut(s) 147, 170, 312, 315, 318, 385, 963, 1042
Sau3AI GATC 2 cut(s) 602, 621
Sau96I GGNCC 2 cut(s) 118, 1030
SchI GAGTC 1 cut(s) 999
ScrFI CCNGG 3 cut(s) 15, 821, 1066
SduI GDGCHC 3 cut(s) 784, 922, 1023
SfaNI GCATC 2 cut(s) 277, 1098
SfcI CTRYAG 2 cut(s) 258, 1083
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 3 cut(s) 332, 723, 998
SmlI CTYRAG 2 cut(s) 419, 1004
SmoI CTYRAG 2 cut(s) 419, 1004
Sse9I AATT 7 cut(s) 59, 198, 407, 562, 693, 788, 1088
SseBI AGGCCT 2 cut(s) 573, 943
SsiI CCGC 1 cut(s) 169
SspMI CTAG 3 cut(s) 66, 174, 306
SstI GAGCTC 1 cut(s) 1023
StuI AGGCCT 2 cut(s) 573, 943
StyD4I CCNGG 3 cut(s) 13, 819, 1064
TaaI ACNGT 3 cut(s) 364, 493, 598
TaiI ACGT 2 cut(s) 979, 1105
TaqI TCGA 4 cut(s) 344, 514, 996, 1106
TasI AATT 7 cut(s) 59, 198, 407, 562, 693, 788, 1088
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 2 cut(s) 159, 630
Tru1I TTAA 2 cut(s) 488, 1053
Tru9I TTAA 2 cut(s) 488, 1053
TscAI CASTG 3 cut(s) 307, 601, 1054
TseFI GTSAC 1 cut(s) 1075
TseI GCWGC 7 cut(s) 146, 311, 314, 317, 384, 962, 1041
Tsp45I GTSAC 1 cut(s) 1075
TspDTI ATGAA 1 cut(s) 824
TspGWI ACGGA 2 cut(s) 885, 984
TspRI CASTG 3 cut(s) 307, 601, 1054
Tth111I GACNNNGTC 1 cut(s) 510
Van91I CCANNNNNTGG 1 cut(s) 61
VneI GTGCAC 1 cut(s) 918
VpaK11BI GGWCC 1 cut(s) 118
XagI CCTNNNNNAGG 1 cut(s) 824
XapI RAATTY 2 cut(s) 562, 1088
XceI RCATGY 1 cut(s) 352
XmiI GTMKAC 2 cut(s) 353, 591
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 3 cut(s) 66, 174, 306
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.