pycom17g14260

(S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
11762997 .. 11765279
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g14260.1

Sequence Viewer

Length: 1032 bp
ATGTACTATGATTACTACACTGGGGGAGCTGAGGACCAGCACACGCTAAAAGAGAACGTTGAAGCATTTCGCAGAATCACGTTGCGGCCTAGAATTCTTGTCGATGTTAGCAGAGTAGATATGTCAACTACCATATTGGGTTACAAAATCTCAGCACCTATAATGCTTGCTCCTACTGCCATGCATCAATTGGCCCACCCCGAAGGAGAGGTTGCAACTGCCAGAGCAGCAGCTGCGTGTAACACCGTAATGATTTTGTCCTACATGTCCACCTGCACTGTGGAGGAGGTTGCTTCAAGCTGCAATGCTGTTCGGTTCTTTCAAATATATGTTTACAAAAGACGAGATATCTCAGCTCAGATAGTTCGCAGAGCTGAAAAAAATGGATACAAGGCTATTGTCCTAACCGCTGATACTCCTAGACTTGGTCGAAGAGAGGCAGACATAAAGAATAAAATGGTAGCGCCTCGGTTGAGGAATTTTGAAGGCCTTATATCAACTGAAGTAGACAGTGATGAAGGGTCAAACTTGGAAGCTTTTGCCAAGGGGACCTTTGATGCTTCTCTGTGCTGGGAGGACATAGGGTGGCTGAAATCTATTACAAACTTGCCAATTCTAATCAAGGGGGTTCTCACTCATGAAGATGCAAGAAAGGCTATGGAGGTAGGTGTTGCTGGGATTGTTGTCTCCAACCATGGAGCACGTCAACTCGATTATACTCCTGCTACTATTTCTGTCCTGGAAGAGGTGGTTCATGCTGTTGGAGGAAAAATTCCTGTTCTTTTTGATGGAGGAATACGGCGAGGAACAGATGTGTTCAAGGCGCTGGCCCTCGGTGCACAAGCTGTCCTTGTTGGAAGGCCTGTTGTCTATGGCCTAGCAGCAAACGGAAAACGGGGAGTTAAGCGGGTGATCGAAATGTTGAAGGATGAGTTTGAGCTCACAATGGCCCTTTCTGGCTGTCCTAGTATTAGGGATATTACCAGGAGCCATGTCAGAACAGAAAGTGATAAATTCCATTCGATGCTCTAA

Protein Analysis

344

Amino Acids

37.74

Weight (kDa)

8.5

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 2 - 333 2.9e-135 FMN-dependent dehydrogenase
NMO PF03060 206 - 330 3.9e-07 Nitronate monooxygenase
IMPDH PF00478 245 - 287 2.7e-06 IMP dehydrogenase / GMP reductase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 281
Acc36I ACCTGC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 507
AciI CCGC 3 cut(s) 85, 408, 907
AclI AACGTT 1 cut(s) 57
AcsI RAATTY 4 cut(s) 93, 478, 771, 1013
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 425, 745
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 6 cut(s) 62, 297, 323, 485, 820, 925
AjiI CACGTC 1 cut(s) 704
AjnI CCWGG 2 cut(s) 738, 983
AluBI AGCT 8 cut(s) 29, 233, 300, 356, 374, 536, 845, 940
AluI AGCT 8 cut(s) 29, 233, 300, 356, 374, 536, 845, 940
Alw21I GWGCWC 3 cut(s) 703, 841, 942
Alw26I GTCTC 1 cut(s) 691
Alw44I GTGCAC 1 cut(s) 837
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 7 cut(s) 86, 192, 487, 828, 860, 874, 948
ApaLI GTGCAC 1 cut(s) 837
ApeKI GCWGC 5 cut(s) 227, 230, 233, 300, 881
ApoI RAATTY 4 cut(s) 93, 478, 771, 1013
Asp700I GAANNNNTTC 1 cut(s) 66
AspLEI GCGC 2 cut(s) 466, 826
AspS9I GGNCC 5 cut(s) 34, 193, 549, 829, 949
AsuHPI GGTGA 1 cut(s) 922
AvaII GGWCC 2 cut(s) 34, 549
BaeGI GKGCMC 1 cut(s) 841
BanII GRGCYC 1 cut(s) 942
Bbv12I GWGCWC 3 cut(s) 703, 841, 942
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 5 cut(s) 220, 239, 242, 287, 893
BccI CCATC 1 cut(s) 782
BceAI ACGGC 1 cut(s) 815
BciT130I CCWGG 2 cut(s) 740, 985
BciVI GTATCC 1 cut(s) 380
BcoDI GTCTC 1 cut(s) 691
BfaI CTAG 4 cut(s) 90, 420, 878, 966
BfoI RGCGCY 2 cut(s) 467, 827
BfuAI ACCTGC 1 cut(s) 281
BfuI GTATCC 1 cut(s) 380
BisI GCNGC 6 cut(s) 86, 228, 231, 234, 301, 882
BlsI GCNGC 6 cut(s) 87, 229, 232, 235, 302, 883
Bme1390I CCNGG 2 cut(s) 740, 985
Bme18I GGWCC 2 cut(s) 34, 549
BmgBI CACGTC 1 cut(s) 704
BmgT120I GGNCC 5 cut(s) 34, 193, 549, 829, 949
BmiI GGNNCC 2 cut(s) 550, 989
BmrFI CCNGG 2 cut(s) 740, 985
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 4 cut(s) 193, 547, 634, 1014
BmuI ACTGGG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 467, 543, 694, 832
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 745
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 2 cut(s) 740, 985
BseDI CCNNGG 4 cut(s) 467, 543, 694, 832
BseGI GGATG 1 cut(s) 934
BseLI CCNNNNNNNGG 2 cut(s) 425, 745
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 4 cut(s) 21, 165, 366, 371
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 841
BseXI GCAGC 5 cut(s) 220, 239, 242, 287, 893
BseYI CCCAGC 2 cut(s) 570, 674
BsgI GTGCAG 1 cut(s) 259
BshFI GGCC 7 cut(s) 88, 194, 489, 830, 862, 876, 950
BsiHKAI GWGCWC 3 cut(s) 703, 841, 942
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 2 cut(s) 425, 745
BsmAI GTCTC 1 cut(s) 691
BsmFI GGGAC 1 cut(s) 562
BsnI GGCC 7 cut(s) 88, 194, 489, 830, 862, 876, 950
Bsp1286I GDGCHC 3 cut(s) 703, 841, 942
Bsp143I GATC 1 cut(s) 912
Bsp19I CCATGG 1 cut(s) 694
BspACI CCGC 3 cut(s) 85, 408, 907
BspANI GGCC 7 cut(s) 88, 194, 489, 830, 862, 876, 950
BspCNI CTCAG 4 cut(s) 22, 164, 365, 370
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 550, 989
BspMI ACCTGC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 467, 543, 694, 832
BssMI GATC 1 cut(s) 912
BssT1I CCWWGG 2 cut(s) 543, 694
Bst2UI CCWGG 2 cut(s) 740, 985
Bst4CI ACNGT 3 cut(s) 247, 280, 512
Bst6I CTCTTC 2 cut(s) 427, 738
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 168, 828
BstDEI CTNAG 4 cut(s) 30, 151, 352, 357
BstDSI CCRYGG 1 cut(s) 694
BstENI CCTNNNNNAGG 1 cut(s) 743
BstF5I GGATG 1 cut(s) 934
BstH2I RGCGCY 2 cut(s) 467, 827
BstHHI GCGC 2 cut(s) 466, 826
BstKTI GATC 1 cut(s) 915
BstMAI GTCTC 1 cut(s) 691
BstMBI GATC 1 cut(s) 912
BstMWI GCNNNNNNNGC 5 cut(s) 176, 227, 233, 653, 836
BstNI CCWGG 2 cut(s) 740, 985
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 738, 983
BstSLI GKGCMC 1 cut(s) 841
BstV1I GCAGC 5 cut(s) 220, 239, 242, 287, 893
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 7 cut(s) 88, 194, 489, 830, 862, 876, 950
BtgI CCRYGG 1 cut(s) 694
BtrI CACGTC 1 cut(s) 704
BtsCI GGATG 1 cut(s) 934
BtsIMutI CAGTG 3 cut(s) 18, 276, 517
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 168, 828
CaiI CAGNNNCTG 1 cut(s) 233
CciI TCATGA 1 cut(s) 637
CfoI GCGC 2 cut(s) 466, 826
Cfr13I GGNCC 5 cut(s) 34, 193, 549, 829, 949
Csp6I GTAC 1 cut(s) 4
CviAII CATG 6 cut(s) 181, 265, 638, 695, 755, 992
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 4 cut(s) 30, 151, 352, 357
DpnI GATC 1 cut(s) 914
DpnII GATC 1 cut(s) 912
Eam1104I CTCTTC 2 cut(s) 427, 738
EarI CTCTTC 2 cut(s) 427, 738
Ecl136II GAGCTC 1 cut(s) 940
Eco130I CCWWGG 2 cut(s) 543, 694
Eco147I AGGCCT 2 cut(s) 489, 862
Eco24I GRGCYC 1 cut(s) 942
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 2 cut(s) 34, 549
Eco53kI GAGCTC 1 cut(s) 940
Eco57I CTGAAG 1 cut(s) 522
EcoICRI GAGCTC 1 cut(s) 940
EcoNI CCTNNNNNAGG 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 2 cut(s) 738, 983
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 543, 694
EcoT22I ATGCAT 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 942
ErhI CCWWGG 2 cut(s) 543, 694
FaeI CATG 6 cut(s) 184, 268, 641, 698, 758, 995
FalI AAGNNNNNCTT 4 cut(s) 536, 568, 834, 866
FaqI GGGAC 1 cut(s) 562
FatI CATG 6 cut(s) 180, 264, 637, 694, 754, 991
FauI CCCGC 1 cut(s) 900
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 6 cut(s) 86, 228, 231, 234, 301, 882
FokI GGATG 1 cut(s) 941
FriOI GRGCYC 1 cut(s) 942
Fsp4HI GCNGC 6 cut(s) 86, 228, 231, 234, 301, 882
FspBI CTAG 4 cut(s) 90, 420, 878, 966
GlaI GCGC 2 cut(s) 465, 825
GluI GCNGC 6 cut(s) 86, 228, 231, 234, 301, 882
GsaI CCCAGC 2 cut(s) 574, 678
HaeII RGCGCY 2 cut(s) 467, 827
HaeIII GGCC 7 cut(s) 88, 194, 489, 830, 862, 876, 950
HhaI GCGC 2 cut(s) 466, 826
Hin1II CATG 6 cut(s) 184, 268, 641, 698, 758, 995
Hin6I GCGC 2 cut(s) 464, 824
HinP1I GCGC 2 cut(s) 464, 824
HincII GTYRAC 2 cut(s) 126, 707
HindII GTYRAC 2 cut(s) 126, 707
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 1 cut(s) 75
HphI GGTGA 1 cut(s) 922
Hpy166II GTNNAC 6 cut(s) 126, 270, 334, 508, 707, 839
Hpy188I TCNGA 2 cut(s) 360, 998
Hpy188III TCNNGA 1 cut(s) 638
Hpy8I GTNNAC 6 cut(s) 126, 270, 334, 508, 707, 839
HpyAV CCTTC 5 cut(s) 197, 479, 512, 852, 919
HpyCH4III ACNGT 3 cut(s) 247, 280, 512
HpyCH4IV ACGT 3 cut(s) 57, 80, 703
HpyCH4V TGCA 6 cut(s) 184, 215, 276, 303, 647, 839
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 227, 233, 653, 836
HpyF3I CTNAG 4 cut(s) 30, 151, 352, 357
HpySE526I ACGT 3 cut(s) 57, 80, 703
Hsp92II CATG 6 cut(s) 184, 268, 641, 698, 758, 995
HspAI GCGC 2 cut(s) 464, 824
Kzo9I GATC 1 cut(s) 912
LmnI GCTCC 4 cut(s) 26, 175, 698, 987
Lsp1109I GCAGC 5 cut(s) 220, 239, 242, 287, 893
LweI GCATC 4 cut(s) 193, 547, 634, 1014
MaeI CTAG 4 cut(s) 90, 420, 878, 966
MaeII ACGT 3 cut(s) 57, 80, 703
MaeIII GTNAC 2 cut(s) 140, 239
MalI GATC 1 cut(s) 914
MboI GATC 1 cut(s) 912
MboII GAAGA 3 cut(s) 444, 653, 755
MfeI CAATTG 1 cut(s) 188
MhlI GDGCHC 3 cut(s) 703, 841, 942
MluCI AATT 6 cut(s) 93, 188, 478, 612, 771, 1013
MmeI TCCRAC 3 cut(s) 714, 742, 835
Mph1103I ATGCAT 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 1 cut(s) 903
MslI CAYNNNNRTG 2 cut(s) 248, 642
MspA1I CMGCKG 2 cut(s) 233, 410
MspR9I CCNGG 2 cut(s) 740, 985
MunI CAATTG 1 cut(s) 188
MvaI CCWGG 2 cut(s) 740, 985
MwoI GCNNNNNNNGC 5 cut(s) 176, 227, 233, 653, 836
NcoI CCATGG 1 cut(s) 694
NdeII GATC 1 cut(s) 912
NlaIII CATG 6 cut(s) 184, 268, 641, 698, 758, 995
NlaIV GGNNCC 2 cut(s) 550, 989
NsiI ATGCAT 1 cut(s) 186
NspI RCATGY 1 cut(s) 268
PagI TCATGA 1 cut(s) 637
PaqCI CACCTGC 1 cut(s) 281
PceI AGGCCT 2 cut(s) 489, 862
PciI ACATGT 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 75
PflFI GACNNNGTC 1 cut(s) 426
PfoI TCCNGGA 1 cut(s) 738
PkrI GCNGC 6 cut(s) 87, 229, 232, 235, 302, 883
PpuMI RGGWCCY 1 cut(s) 549
PscI ACATGT 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 942
Psp1406I AACGTT 1 cut(s) 57
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 738, 983
PspFI CCCAGC 2 cut(s) 570, 674
PspGI CCWGG 2 cut(s) 738, 983
PspN4I GGNNCC 2 cut(s) 550, 989
PspPI GGNCC 5 cut(s) 34, 193, 549, 829, 949
PspPPI RGGWCCY 1 cut(s) 549
PstNI CAGNNNCTG 1 cut(s) 233
PsyI GACNNNGTC 1 cut(s) 426
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 248, 642
SacI GAGCTC 1 cut(s) 942
SaqAI TTAA 1 cut(s) 903
SatI GCNGC 6 cut(s) 86, 228, 231, 234, 301, 882
Sau3AI GATC 1 cut(s) 912
Sau96I GGNCC 5 cut(s) 34, 193, 549, 829, 949
ScrFI CCNGG 2 cut(s) 740, 985
SduI GDGCHC 3 cut(s) 703, 841, 942
SfaNI GCATC 4 cut(s) 193, 547, 634, 1014
SinI GGWCC 2 cut(s) 34, 549
SmiMI CAYNNNNRTG 2 cut(s) 248, 642
Sse9I AATT 6 cut(s) 93, 188, 478, 612, 771, 1013
SseBI AGGCCT 2 cut(s) 489, 862
SsiI CCGC 3 cut(s) 85, 408, 907
SspMI CTAG 4 cut(s) 90, 420, 878, 966
SstI GAGCTC 1 cut(s) 942
StuI AGGCCT 2 cut(s) 489, 862
StyD4I CCNGG 2 cut(s) 738, 983
StyI CCWWGG 2 cut(s) 543, 694
TaaI ACNGT 3 cut(s) 247, 280, 512
TaiI ACGT 3 cut(s) 60, 83, 706
TaqI TCGA 5 cut(s) 102, 430, 711, 915, 1022
TasI AATT 6 cut(s) 93, 188, 478, 612, 771, 1013
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 903
Tru9I TTAA 1 cut(s) 903
TscAI CASTG 3 cut(s) 25, 283, 517
TseI GCWGC 5 cut(s) 227, 230, 233, 300, 881
TspDTI ATGAA 3 cut(s) 531, 654, 743
TspGWI ACGGA 1 cut(s) 903
TspRI CASTG 3 cut(s) 25, 283, 517
Tth111I GACNNNGTC 1 cut(s) 426
VneI GTGCAC 1 cut(s) 837
VpaK11BI GGWCC 2 cut(s) 34, 549
XagI CCTNNNNNAGG 1 cut(s) 743
XapI RAATTY 4 cut(s) 93, 478, 771, 1013
XceI RCATGY 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 2 cut(s) 187, 277
XmiI GTMKAC 1 cut(s) 507
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 4 cut(s) 90, 420, 878, 966
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.