FvH4_6g35190

(S)-2-hydroxy-acid oxidase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
27811875 .. 27820631
8757 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35190.t1

Sequence Viewer

Length: 1113 bp
ATGTTTCCAGGACAAATGGCATCTGAACCTGTAAATGTGAATGAATTCCAAGAATTGGCTAGACAAGTCCTTCCAAAAATGTACTACGATTTTTATACTGGGGGAGCTGAGGACCAGTTCACGCTAAAAGAGAATGTGGAAGCATTTCGCAAAATCACGTTAAGGCCTAGAGTTCTTGTAGATGTTAGCAGAATTGATATGTCAACCACTATATTGGGGTACAGAATCTCAGCACCTATAATGATTGCTCCTAGCGCTATGCATCAGTTAGCACACCCTGAAGGAGAGGTCGCCACTGCTAGAGCTGCAGCTGCATCCAACACCATACTGATTTTGTCCTATAATTCTACCTGCACGGTGGAGGAGGTTGCTTCGAGCTGCAGTGCTGTTCGGTTCTTTCAATTATATATTTTCAGGAGACGAGATATATCAGCTCAGATTGTTCAAAGAGCTGAAAAGAATGGATACAAGGCAATTGTCTTAACTGTTGATGTTCCCAGGCTTGGCAGAAGAGAGGCAGACATAAAGAACAAAATGGTTGCTCCTCAGTTGAAGAACTTTGAAGGCCTAATATCAACTGCCCTAGAATCTGATGAAGGATCCAACTTGGAAGCTTTTGCCAGAGCGGCCTATGATGATTCTTTGTGCTGGGAGGACGTAATAGGATGGTTGAAATCTATTACAAGCTTGCCGATTCTAGTCAAGGGTATACTCACTCAAGAAGATGCAAGAAAGGCTGTGGAAGTAGGTGTTGCCGGGATAGTTGTCTCTAATCATGGAGCGCGGCAACTAGACTTCACTCCTGCCACTATTTCTGTCCTGGAAGAGGTGGTTCAAGCTGTTGGAGGGAAAGTTCCTGTTCTTTTTGATGGAGGAATACGACGAGGAACTGACATCTTCAAGGCATTAGCCCTCGGAGCACAAGCCGTCCTTGTTGGAAGGCCTGTACTCTATGGCCTCGCAGCAGATGGAGAAGATGGTGTGAGAAAGGTCATGAAGATGTTGAAGGATGAACTAGAGCTCACTATGGCTCTCTCTGGCTGTCCTAGTGTTCATGACATTACCAGGAGCCACGTGAGAACAGAATGTGATAGAATCAGCTCCATGCTTTAA

Protein Analysis

371

Amino Acids

40.5

Weight (kDa)

5.86

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 20 - 360 5.8e-135 FMN-dependent dehydrogenase
NMO PF03060 236 - 349 3.2e-07 Nitronate monooxygenase
IMPDH PF00478 271 - 314 2.5e-06 IMP dehydrogenase / GMP reductase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 709
AccII CGCG 1 cut(s) 784
AciI CCGC 2 cut(s) 626, 784
AclWI GGATC 2 cut(s) 594, 607
AcsI RAATTY 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 300
AcvI CACGTG 1 cut(s) 1075
AfaI GTAC 3 cut(s) 83, 221, 948
AfeI AGCGCT 1 cut(s) 256
AfiI CCNNNNNNNGG 3 cut(s) 55, 503, 826
AgsI TTSAA 8 cut(s) 401, 446, 553, 563, 673, 836, 901, 1006
AjnI CCWGG 4 cut(s) 7, 497, 819, 1064
AloI GAACNNNNNNTCC 2 cut(s) 837, 869
Alw21I GWGCWC 2 cut(s) 922, 1023
Alw26I GTCTC 2 cut(s) 412, 772
AlwI GGATC 2 cut(s) 594, 607
Aor51HI AGCGCT 1 cut(s) 256
AoxI GGCC 5 cut(s) 164, 565, 627, 941, 955
ApeKI GCWGC 5 cut(s) 305, 308, 311, 378, 962
ApoI RAATTY 1 cut(s) 44
Asp700I GAANNNNTTC 2 cut(s) 44, 144
AspLEI GCGC 2 cut(s) 257, 784
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 757
AvaII GGWCC 1 cut(s) 112
BamHI GGATCC 1 cut(s) 599
BanII GRGCYC 1 cut(s) 1023
BbrPI CACGTG 1 cut(s) 1075
Bbv12I GWGCWC 2 cut(s) 922, 1023
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 5 cut(s) 292, 298, 320, 365, 974
BccI CCATC 4 cut(s) 660, 863, 962, 971
BceAI ACGGC 1 cut(s) 911
BciT130I CCWGG 4 cut(s) 9, 499, 821, 1066
BciVI GTATCC 1 cut(s) 458
BcnI CCSGG 1 cut(s) 757
BcoDI GTCTC 2 cut(s) 412, 772
BfaI CTAG 9 cut(s) 60, 168, 252, 300, 584, 698, 791, 1016, 1047
BfmI CTRYAG 2 cut(s) 306, 379
BfoI RGCGCY 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 359
BfuI GTATCC 1 cut(s) 458
BglI GCCNNNNNGGC 1 cut(s) 626
BisI GCNGC 7 cut(s) 306, 309, 312, 379, 627, 785, 963
BlsI GCNGC 7 cut(s) 307, 310, 313, 380, 628, 786, 964
Bme1390I CCNGG 5 cut(s) 9, 499, 757, 821, 1066
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 601, 1070
BmrFI CCNGG 5 cut(s) 9, 499, 757, 821, 1066
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 4 cut(s) 29, 271, 323, 715
BmuI ACTGGG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 757
BsaAI YACGTR 1 cut(s) 1075
BsaJI CCNNGG 2 cut(s) 497, 913
BsaXI ACNNNNNCTCC 2 cut(s) 837, 867
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 503, 826
Bse1I ACTGG 2 cut(s) 103, 115
BseBI CCWGG 4 cut(s) 9, 499, 821, 1066
BseDI CCNNGG 2 cut(s) 497, 913
BseGI GGATG 3 cut(s) 314, 671, 1015
BseLI CCNNNNNNNGG 3 cut(s) 55, 503, 826
BseMII CTCAG 4 cut(s) 99, 243, 449, 560
BseNI ACTGG 2 cut(s) 103, 115
BseRI GAGGAG 2 cut(s) 377, 534
BseXI GCAGC 5 cut(s) 292, 298, 320, 365, 974
BseYI CCCAGC 1 cut(s) 648
BsgI GTGCAG 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 784
BshFI GGCC 5 cut(s) 166, 567, 629, 943, 957
BsiHKAI GWGCWC 2 cut(s) 922, 1023
BsiSI CCGG 1 cut(s) 756
BslI CCNNNNNNNGG 3 cut(s) 55, 503, 826
BsmAI GTCTC 2 cut(s) 412, 772
BsmBI CGTCTC 1 cut(s) 412
BsnI GGCC 5 cut(s) 166, 567, 629, 943, 957
Bsp1286I GDGCHC 2 cut(s) 922, 1023
Bsp143I GATC 1 cut(s) 599
BspACI CCGC 2 cut(s) 626, 784
BspANI GGCC 5 cut(s) 166, 567, 629, 943, 957
BspCNI CTCAG 4 cut(s) 100, 242, 448, 559
BspFNI CGCG 1 cut(s) 784
BspHI TCATGA 2 cut(s) 993, 1054
BspLI GGNNCC 2 cut(s) 601, 1070
BspMAI CTGCAG 2 cut(s) 310, 383
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 2 cut(s) 594, 607
BsrBI CCGCTC 1 cut(s) 626
BsrI ACTGG 2 cut(s) 103, 115
BssECI CCNNGG 2 cut(s) 497, 913
BssMI GATC 1 cut(s) 599
BssNAI GTATAC 1 cut(s) 710
Bst1107I GTATAC 1 cut(s) 710
Bst2UI CCWGG 4 cut(s) 9, 499, 821, 1066
Bst4CI ACNGT 2 cut(s) 358, 487
Bst6I CTCTTC 2 cut(s) 505, 819
BstBAI YACGTR 1 cut(s) 1075
BstC8I GCNNGC 1 cut(s) 689
BstDEI CTNAG 4 cut(s) 108, 229, 435, 546
BstENI CCTNNNNNAGG 1 cut(s) 824
BstF5I GGATG 3 cut(s) 314, 671, 1015
BstFNI CGCG 1 cut(s) 784
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 2 cut(s) 257, 784
BstKTI GATC 1 cut(s) 602
BstMAI GTCTC 2 cut(s) 412, 772
BstMBI GATC 1 cut(s) 599
BstMWI GCNNNNNNNGC 6 cut(s) 254, 305, 311, 626, 734, 917
BstNI CCWGG 4 cut(s) 9, 499, 821, 1066
BstSCI CCNGG 5 cut(s) 7, 497, 755, 819, 1064
BstSFI CTRYAG 2 cut(s) 306, 379
BstUI CGCG 1 cut(s) 784
BstV1I GCAGC 5 cut(s) 292, 298, 320, 365, 974
BstX2I RGATCY 1 cut(s) 599
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 1 cut(s) 599
BstZ17I GTATAC 1 cut(s) 710
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 5 cut(s) 166, 567, 629, 943, 957
BtsCI GGATG 3 cut(s) 314, 671, 1015
BtsI GCAGTG 2 cut(s) 294, 388
BtsIMutI CAGTG 2 cut(s) 294, 388
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 689
CciI TCATGA 2 cut(s) 993, 1054
CfoI GCGC 2 cut(s) 257, 784
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 3 cut(s) 82, 220, 947
CviAII CATG 4 cut(s) 776, 994, 1055, 1105
CviQI GTAC 3 cut(s) 82, 220, 947
DdeI CTNAG 4 cut(s) 108, 229, 435, 546
DpnI GATC 1 cut(s) 601
DpnII GATC 1 cut(s) 599
Eam1104I CTCTTC 2 cut(s) 505, 819
EarI CTCTTC 2 cut(s) 505, 819
Ecl136II GAGCTC 1 cut(s) 1021
Eco147I AGGCCT 3 cut(s) 166, 567, 943
Eco24I GRGCYC 1 cut(s) 1023
Eco47I GGWCC 1 cut(s) 112
Eco47III AGCGCT 1 cut(s) 256
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 1 cut(s) 300
Eco72I CACGTG 1 cut(s) 1075
EcoICRI GAGCTC 1 cut(s) 1021
EcoNI CCTNNNNNAGG 1 cut(s) 824
EcoRI GAATTC 1 cut(s) 44
EcoRII CCWGG 4 cut(s) 7, 497, 819, 1064
EcoT22I ATGCAT 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 1023
Esp3I CGTCTC 1 cut(s) 412
FaeI CATG 4 cut(s) 779, 997, 1058, 1108
FalI AAGNNNNNCTT 2 cut(s) 915, 947
FatI CATG 4 cut(s) 775, 993, 1054, 1104
FblI GTMKAC 1 cut(s) 709
Fnu4HI GCNGC 7 cut(s) 306, 309, 312, 379, 627, 785, 963
FokI GGATG 3 cut(s) 301, 678, 1022
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 7 cut(s) 306, 309, 312, 379, 627, 785, 963
FspBI CTAG 9 cut(s) 60, 168, 252, 300, 584, 698, 791, 1016, 1047
GlaI GCGC 2 cut(s) 256, 783
GluI GCNGC 7 cut(s) 306, 309, 312, 379, 627, 785, 963
GsaI CCCAGC 1 cut(s) 652
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 5 cut(s) 166, 567, 629, 943, 957
HapII CCGG 1 cut(s) 756
HhaI GCGC 2 cut(s) 257, 784
Hin1II CATG 4 cut(s) 779, 997, 1058, 1108
Hin6I GCGC 2 cut(s) 255, 782
HinP1I GCGC 2 cut(s) 255, 782
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 2 cut(s) 612, 685
HinfI GANTC 5 cut(s) 225, 587, 638, 694, 1095
HpaII CCGG 1 cut(s) 756
Hpy166II GTNNAC 3 cut(s) 120, 204, 710
Hpy188I TCNGA 4 cut(s) 25, 438, 592, 917
Hpy188III TCNNGA 4 cut(s) 415, 719, 994, 1055
Hpy8I GTNNAC 3 cut(s) 120, 204, 710
Hpy99I CGWCG 1 cut(s) 885
HpyAV CCTTC 6 cut(s) 80, 275, 557, 590, 933, 1000
HpyCH4III ACNGT 2 cut(s) 358, 487
HpyCH4IV ACGT 3 cut(s) 158, 657, 1074
HpyCH4V TGCA 6 cut(s) 262, 308, 314, 354, 381, 728
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 305, 311, 626, 734, 917
HpyF3I CTNAG 4 cut(s) 108, 229, 435, 546
HpySE526I ACGT 3 cut(s) 158, 657, 1074
Hsp92II CATG 4 cut(s) 779, 997, 1058, 1108
HspAI GCGC 2 cut(s) 255, 782
Kzo9I GATC 1 cut(s) 599
LmnI GCTCC 7 cut(s) 104, 253, 547, 779, 917, 1068, 1106
Lsp1109I GCAGC 5 cut(s) 292, 298, 320, 365, 974
LweI GCATC 4 cut(s) 29, 271, 323, 715
MaeI CTAG 9 cut(s) 60, 168, 252, 300, 584, 698, 791, 1016, 1047
MaeII ACGT 3 cut(s) 158, 657, 1074
MalI GATC 1 cut(s) 601
MbiI CCGCTC 1 cut(s) 626
MboI GATC 1 cut(s) 599
MboII GAAGA 7 cut(s) 522, 565, 734, 836, 889, 986, 1009
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 2 cut(s) 922, 1023
MluCI AATT 6 cut(s) 44, 53, 192, 343, 401, 474
MmeI TCCRAC 4 cut(s) 342, 627, 823, 916
Mph1103I ATGCAT 1 cut(s) 264
MroXI GAANNNNTTC 2 cut(s) 44, 144
MseI TTAA 3 cut(s) 161, 482, 1111
MslI CAYNNNNRTG 1 cut(s) 998
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 1 cut(s) 756
MspR9I CCNGG 5 cut(s) 9, 499, 757, 821, 1066
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 4 cut(s) 9, 499, 821, 1066
MvnI CGCG 1 cut(s) 784
MwoI GCNNNNNNNGC 6 cut(s) 254, 305, 311, 626, 734, 917
NciI CCSGG 1 cut(s) 757
NdeII GATC 1 cut(s) 599
NlaIII CATG 4 cut(s) 779, 997, 1058, 1108
NlaIV GGNNCC 2 cut(s) 601, 1070
NsiI ATGCAT 1 cut(s) 264
PagI TCATGA 2 cut(s) 993, 1054
PceI AGGCCT 3 cut(s) 166, 567, 943
PdmI GAANNNNTTC 2 cut(s) 44, 144
PfeI GAWTC 5 cut(s) 225, 587, 638, 694, 1095
PflMI CCANNNNNTGG 1 cut(s) 55
PfoI TCCNGGA 2 cut(s) 7, 819
PkrI GCNGC 7 cut(s) 307, 310, 313, 380, 628, 786, 964
PmaCI CACGTG 1 cut(s) 1075
PmlI CACGTG 1 cut(s) 1075
Ppu21I YACGTR 1 cut(s) 1075
Psp124BI GAGCTC 1 cut(s) 1023
Psp6I CCWGG 4 cut(s) 7, 497, 819, 1064
PspCI CACGTG 1 cut(s) 1075
PspFI CCCAGC 1 cut(s) 648
PspGI CCWGG 4 cut(s) 7, 497, 819, 1064
PspN4I GGNNCC 2 cut(s) 601, 1070
PspPI GGNCC 1 cut(s) 112
PstI CTGCAG 2 cut(s) 310, 383
PsuI RGATCY 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 3 cut(s) 83, 221, 948
RsaNI GTAC 3 cut(s) 82, 220, 947
RseI CAYNNNNRTG 1 cut(s) 998
SacI GAGCTC 1 cut(s) 1023
SaqAI TTAA 3 cut(s) 161, 482, 1111
SatI GCNGC 7 cut(s) 306, 309, 312, 379, 627, 785, 963
Sau3AI GATC 1 cut(s) 599
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 5 cut(s) 9, 499, 757, 821, 1066
SduI GDGCHC 2 cut(s) 922, 1023
SfaNI GCATC 4 cut(s) 29, 271, 323, 715
SfcI CTRYAG 2 cut(s) 306, 379
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 998
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
Sse9I AATT 6 cut(s) 44, 53, 192, 343, 401, 474
SseBI AGGCCT 3 cut(s) 166, 567, 943
SsiI CCGC 2 cut(s) 626, 784
SspMI CTAG 9 cut(s) 60, 168, 252, 300, 584, 698, 791, 1016, 1047
SstI GAGCTC 1 cut(s) 1023
StuI AGGCCT 3 cut(s) 166, 567, 943
StyD4I CCNGG 5 cut(s) 7, 497, 755, 819, 1064
TaaI ACNGT 2 cut(s) 358, 487
TaiI ACGT 3 cut(s) 161, 660, 1077
TaqI TCGA 1 cut(s) 374
TasI AATT 6 cut(s) 44, 53, 192, 343, 401, 474
TatI WGTACW 2 cut(s) 81, 946
TauI GCSGC 2 cut(s) 629, 787
TfiI GAWTC 5 cut(s) 225, 587, 638, 694, 1095
Tru1I TTAA 3 cut(s) 161, 482, 1111
Tru9I TTAA 3 cut(s) 161, 482, 1111
TscAI CASTG 2 cut(s) 301, 388
TseI GCWGC 5 cut(s) 305, 308, 311, 378, 962
TspDTI ATGAA 5 cut(s) 57, 609, 1010, 1026, 1043
TspRI CASTG 2 cut(s) 301, 388
Van91I CCANNNNNTGG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 112
XagI CCTNNNNNAGG 1 cut(s) 824
XapI RAATTY 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 709
XmnI GAANNNNTTC 2 cut(s) 44, 144
XspI CTAG 9 cut(s) 60, 168, 252, 300, 584, 698, 791, 1016, 1047
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.