Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010145

Physical Location & Seq

Genomic Coordinates Reverse (-)

65570065 .. 65590020

Gene Structure 19956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG464100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGTCAGGTGGTTCAAGCTGTTGGAAGGAAAGTTCCTGTTCTTTTTTCCTGCGAGAATTGTAATGTAAATGTGTTAGTGCAGGTTGGAAGACCTATTATCTATGGCCTTGCAGCAAATGGAGAAGATGGGGTGAGAAAGGTCATGAAGATGTTGAAGGATAAGTTAGAGCTCACTATGGCTCTCTCTGGCTGTCCTAGTGTTAAGGATATTACCAGGAGCCACAAATTGCAGGTTGGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

81

Amino Acids

8.75

Weight (kDa)

9.45

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	27 - 75	7.2e-15	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14150 AT3G14150 AT3G14150 AT3G14150 AT3G14150
malus_domestica	MD09G1177900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146491 RchiOBHm_Chr2g0146521
rosa_multiflora	Rmu_sc0001986.1_g000007 Rmu_sc0001986.1_g000010 Rmu_sc0005157.1_g000015
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451300 Rh2BG463800 Rh2BG463900 Rh2BG464000 Rh2BG464100 Rh2CG438100 Rh2CG438300 Rh2DG473200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	73, 223
AgsI	TTSAA	2 cut(s)	17, 157
AjnI	CCWGG	1 cut(s)	215
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	2 cut(s)	20, 172
AluI	AGCT	2 cut(s)	20, 172
Alw21I	GWGCWC	1 cut(s)	174
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	217
BfaI	CTAG	1 cut(s)	198
BfuAI	ACCTGC	2 cut(s)	73, 223
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	221
BspMI	ACCTGC	2 cut(s)	73, 223
Bst2UI	CCWGG	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	108
BveI	ACCTGC	2 cut(s)	73, 223
CciI	TCATGA	1 cut(s)	144
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	6 cut(s)	20, 108, 172, 182, 192, 222
CviKI_1	RGCY	6 cut(s)	20, 108, 172, 182, 192, 222
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	1 cut(s)	148
FaiI	YATR	3 cut(s)	105, 146, 179
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	21, 151
HpyCH4V	TGCA	3 cut(s)	82, 113, 232
Hsp92II	CATG	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	7 cut(s)	51, 64, 68, 174, 202, 218, 229
Lsp1109I	GCAGC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	198
MboII	GAAGA	3 cut(s)	102, 137, 160
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	58, 227
MmeI	TCCRAC	2 cut(s)	4, 67
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	221
PagI	TCATGA	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	7 cut(s)	12, 22, 87, 97, 144, 174, 237
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	58, 227
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	215
TasI	AATT	2 cut(s)	58, 227
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	161
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.