Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010145

Physical Location & Seq

Genomic Coordinates Reverse (-)

59516799 .. 59561897

Gene Structure 45099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG438300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAAGGAGGTTCTATAACCCAACTTTGTAATGCCCAAGTTTGGGGTCCAGAGACAAACATGGAGAGGTGGCCACTGCTAGAGCGGCAGCTGCATCCAACACGTACTATAATGATTTTGTCCTACATGTCTACCTGCACTGTGGAGGAGGTTGCTTCGAGCTGCAATGCTGTTCGGTTCTTGCAATTATATGTTTTCAAGAGACGAGATATATCGGCTCAGATAGTTCAAAGAGCTGAAAAAAATGGATACAAAGCTATTGTACTAACTGTCGATGCTCCCAGACTTGGTAGAAGAGAGGCAGACATAAAGAACAAAATGATTTCACCTCAGTTGAAAAACTTCGAAGGCCTAATATCAACTGAACTACTAGACTCTGATGAAGGATCCAACTTGGAAGCTTTTGTCAGAGCGTCCTATGATGATTCTTTGTGCTGGGAGGTTGGAAGGCCTGTTATCTATGGCCTTGCAGCAAATGGAGAAGATGGGGTGAGAAAGGTCATGAAGATGTTGAAGGATGAGTTAGAGCTCACTATGGCTCTCTCTGGCTGTCCTAGTGTTAAGGATATTACCAGGAGCCACGTGAGAACAGAATGTGAAAGACTCCGCTCCCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003973 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008891 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009853 GO:0009987 GO:0010109 GO:0010204 GO:0016032 GO:0016491 GO:0016614 GO:0016899 GO:0016999 GO:0017000 GO:0017144 GO:0019048 GO:0019222 GO:0023052 GO:0031323 GO:0031347 GO:0031349 GO:0035821 GO:0042579 GO:0042742 GO:0042743 GO:0043094 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044003 GO:0044237 GO:0044249 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050665 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0055114 GO:0065007 GO:0072593 GO:0080134 GO:0098542 GO:1903409

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00630 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

FMN_dh

Protein Analysis

206

Amino Acids

23.29

Weight (kDa)

7.57

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	32 - 147	1.2e-21	FMN-dependent dehydrogenase
FMN_dh	PF01070	148 - 196	3.4e-15	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14130 AT3G14150 AT3G14150 AT3G14150 AT3G14150 AT3G14150
malus_domestica	MD09G1177900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146491 RchiOBHm_Chr2g0146521
rosa_multiflora	Rmu_sc0001986.1_g000007 Rmu_sc0001986.1_g000010 Rmu_sc0005157.1_g000015
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451300 Rh2BG463800 Rh2BG463900 Rh2BG464000 Rh2BG464100 Rh2CG438100 Rh2CG438300 Rh2DG473200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AccBSI	CCGCTC	2 cut(s)	85, 609
AccI	GTMKAC	1 cut(s)	131
AciI	CCGC	2 cut(s)	85, 607
AclWI	GGATC	2 cut(s)	381, 394
AcoI	YGGCCR	1 cut(s)	71
AcvI	CACGTG	1 cut(s)	583
AfaI	GTAC	2 cut(s)	106, 264
AfiI	CCNNNNNNNGG	3 cut(s)	42, 43, 287
AflIII	ACRYGT	2 cut(s)	101, 126
AgsI	TTSAA	4 cut(s)	199, 230, 337, 514
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	7 cut(s)	91, 162, 236, 257, 401, 529, 616
AluI	AGCT	7 cut(s)	91, 162, 236, 257, 401, 529, 616
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	2 cut(s)	47, 196
AlwI	GGATC	2 cut(s)	381, 394
AoxI	GGCC	4 cut(s)	71, 349, 449, 463
ApeKI	GCWGC	4 cut(s)	88, 91, 162, 470
Asp700I	GAANNNNTTC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	318, 502
AsuII	TTCGAA	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	73
BamHI	GGATCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	531
BbrPI	CACGTG	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	78, 100, 149, 482
BccI	CCATC	1 cut(s)	479
BciT130I	CCWGG	1 cut(s)	574
BciVI	GTATCC	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	47, 196
BfaI	CTAG	3 cut(s)	80, 371, 555
BfuAI	ACCTGC	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	242
BisI	GCNGC	5 cut(s)	86, 89, 92, 163, 471
BlsI	GCNGC	5 cut(s)	87, 90, 93, 164, 472
Bme1390I	CCNGG	1 cut(s)	574
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	3 cut(s)	48, 388, 578
BmrFI	CCNGG	1 cut(s)	574
BmsI	GCATC	2 cut(s)	103, 265
Bpu14I	TTCGAA	1 cut(s)	345
BsaAI	YACGTR	2 cut(s)	104, 583
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 43, 287
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	574
BseGI	GGATG	2 cut(s)	94, 523
BseLI	CCNNNNNNNGG	3 cut(s)	42, 43, 287
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	233, 344
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	4 cut(s)	78, 100, 149, 482
BseYI	CCCAGC	2 cut(s)	435, 612
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	4 cut(s)	73, 351, 451, 465
BsiHKAI	GWGCWC	1 cut(s)	531
BslI	CCNNNNNNNGG	3 cut(s)	42, 43, 287
BsmAI	GTCTC	2 cut(s)	47, 196
BsmBI	CGTCTC	1 cut(s)	196
BsnI	GGCC	4 cut(s)	73, 351, 451, 465
Bsp119I	TTCGAA	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	1 cut(s)	386
BspACI	CCGC	2 cut(s)	85, 607
BspANI	GGCC	4 cut(s)	73, 351, 451, 465
BspCNI	CTCAG	2 cut(s)	232, 343
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	3 cut(s)	48, 388, 578
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	381, 394
BspT104I	TTCGAA	1 cut(s)	345
BsrBI	CCGCTC	2 cut(s)	85, 609
BsrDI	GCAATG	1 cut(s)	172
BssMI	GATC	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	2 cut(s)	142, 271
Bst6I	CTCTTC	1 cut(s)	289
BstBAI	YACGTR	2 cut(s)	104, 583
BstBI	TTCGAA	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	219, 330
BstF5I	GGATG	2 cut(s)	94, 523
BstKTI	GATC	1 cut(s)	389
BstMAI	GTCTC	2 cut(s)	47, 196
BstMBI	GATC	1 cut(s)	386
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 91
BstNI	CCWGG	1 cut(s)	574
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	572
BstV1I	GCAGC	4 cut(s)	78, 100, 149, 482
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	4 cut(s)	73, 351, 451, 465
BtsCI	GGATG	2 cut(s)	94, 523
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	74, 138
BveI	ACCTGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	105, 263
CviAII	CATG	3 cut(s)	61, 127, 502
CviQI	GTAC	2 cut(s)	105, 263
DdeI	CTNAG	2 cut(s)	219, 330
DpnI	GATC	1 cut(s)	388
DpnII	GATC	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	529
Eco147I	AGGCCT	2 cut(s)	351, 451
Eco24I	GRGCYC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	529
Eco72I	CACGTG	1 cut(s)	583
EcoICRI	GAGCTC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	572
EcoT38I	GRGCYC	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	3 cut(s)	64, 130, 505
FatI	CATG	3 cut(s)	60, 126, 501
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	5 cut(s)	86, 89, 92, 163, 471
FokI	GGATG	2 cut(s)	81, 530
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	5 cut(s)	86, 89, 92, 163, 471
FspBI	CTAG	3 cut(s)	80, 371, 555
GluI	GCNGC	5 cut(s)	86, 89, 92, 163, 471
GsaI	CCCAGC	2 cut(s)	439, 616
HaeIII	GGCC	4 cut(s)	73, 351, 451, 465
HgaI	GACGC	1 cut(s)	402
Hin1II	CATG	3 cut(s)	64, 130, 505
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	3 cut(s)	374, 425, 603
HphI	GGTGA	2 cut(s)	318, 502
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	3 cut(s)	222, 379, 410
Hpy188III	TCNNGA	3 cut(s)	50, 199, 502
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	4 cut(s)	341, 377, 441, 508
HpyCH4III	ACNGT	2 cut(s)	142, 271
HpyCH4IV	ACGT	2 cut(s)	103, 582
HpyCH4V	TGCA	5 cut(s)	94, 138, 165, 184, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 91
HpyF3I	CTNAG	2 cut(s)	219, 330
HpySE526I	ACGT	2 cut(s)	103, 582
Hsp92II	CATG	3 cut(s)	64, 130, 505
Kzo9I	GATC	1 cut(s)	386
LmnI	GCTCC	3 cut(s)	283, 576, 614
LpnPI	CCDG	8 cut(s)	63, 148, 295, 421, 465, 531, 559, 586
Lsp1109I	GCAGC	4 cut(s)	78, 100, 149, 482
LweI	GCATC	2 cut(s)	103, 265
MaeI	CTAG	3 cut(s)	80, 371, 555
MaeII	ACGT	2 cut(s)	103, 582
MalI	GATC	1 cut(s)	388
MbiI	CCGCTC	2 cut(s)	85, 609
MboI	GATC	1 cut(s)	386
MboII	GAAGA	3 cut(s)	306, 494, 517
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	531
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	73
MlyI	GAGTC	2 cut(s)	368, 597
MmeI	TCCRAC	3 cut(s)	122, 414, 424
MnlI	CCTC	6 cut(s)	60, 139, 142, 292, 339, 433
Mox20I	TGGCCA	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	2 cut(s)	561, 619
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	574
MvaI	CCWGG	1 cut(s)	574
MwoI	GCNNNNNNNGC	2 cut(s)	85, 91
NdeII	GATC	1 cut(s)	386
NlaIII	CATG	3 cut(s)	64, 130, 505
NlaIV	GGNNCC	3 cut(s)	48, 388, 578
NspI	RCATGY	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	345
PagI	TCATGA	1 cut(s)	501
PceI	AGGCCT	2 cut(s)	351, 451
PciI	ACATGT	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	5 cut(s)	87, 90, 93, 164, 472
PleI	GAGTC	2 cut(s)	368, 597
PmaCI	CACGTG	1 cut(s)	583
PmlI	CACGTG	1 cut(s)	583
PpsI	GAGTC	2 cut(s)	368, 597
Ppu21I	YACGTR	2 cut(s)	104, 583
PscI	ACATGT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	572
PspCI	CACGTG	1 cut(s)	583
PspFI	CCCAGC	2 cut(s)	435, 612
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	3 cut(s)	48, 388, 578
PspPI	GGNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	106, 264
RsaNI	GTAC	2 cut(s)	105, 263
RseI	CAYNNNNRTG	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	561, 619
SatI	GCNGC	5 cut(s)	86, 89, 92, 163, 471
Sau3AI	GATC	1 cut(s)	386
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	2 cut(s)	368, 597
ScrFI	CCNGG	1 cut(s)	574
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	2 cut(s)	103, 265
SfuI	TTCGAA	1 cut(s)	345
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	1 cut(s)	185
SseBI	AGGCCT	2 cut(s)	351, 451
SsiI	CCGC	2 cut(s)	85, 607
SspMI	CTAG	3 cut(s)	80, 371, 555
SstI	GAGCTC	1 cut(s)	531
StuI	AGGCCT	2 cut(s)	351, 451
StyD4I	CCNGG	1 cut(s)	572
TaaI	ACNGT	2 cut(s)	142, 271
TaiI	ACGT	2 cut(s)	106, 585
TaqI	TCGA	3 cut(s)	158, 273, 345
TasI	AATT	1 cut(s)	185
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	561, 619
Tru9I	TTAA	2 cut(s)	561, 619
TscAI	CASTG	2 cut(s)	81, 145
TseI	GCWGC	4 cut(s)	88, 91, 162, 470
TspDTI	ATGAA	3 cut(s)	17, 396, 518
TspRI	CASTG	2 cut(s)	81, 145
VpaK11BI	GGWCC	1 cut(s)	47
XceI	RCATGY	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	3 cut(s)	80, 371, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.