chromatin binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72390 AT1G72390 |
| fragaria_vesca | FvH4_6g35180 FvH4_6g35180 FvH4_6g35180 FvH4_6g35180 |
| malus_domestica | MD09G1178000.v1.1 MD17G1148700.v1.1 |
| prunus_persica | Prupe.3G037300_v2.0.a1 |
| pyrus_communis | pycom09g09640 pycom17g14200 pycom17g14240 |
| rosa_chinensis | RchiOBHm_Chr2g0146441 |
| rosa_laevigata | RLG00000020201 |
| rosa_multiflora | Rmu_sc0001986.1_g000006 Rmu_sc0014617.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00100090 |
| rosa_rugosa | Rorug02G0394400 Rorug02G0394400 Rorug02G0394500 |
| rosa_samantha | Rh2AG451200 Rh2BG463700 Rh2CG438000 Rh2DG472700 |
| rosa_wichuraiana | Rw2G036830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3745 |
| AatII | GACGTC | 1 cut(s) | 341 |
| Acc36I | ACCTGC | 1 cut(s) | 3745 |
| AccB1I | GGYRCC | 1 cut(s) | 1430 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2366 |
| AccI | GTMKAC | 1 cut(s) | 1094 |
| AccIII | TCCGGA | 2 cut(s) | 723, 3185 |
| AcoI | YGGCCR | 3 cut(s) | 370, 1150, 1305 |
| AcuI | CTGAAG | 1 cut(s) | 207 |
| AcyI | GRCGYC | 2 cut(s) | 338, 3245 |
| AfaI | GTAC | 5 cut(s) | 34, 904, 2371, 2384, 3590 |
| AflIII | ACRYGT | 1 cut(s) | 90 |
| AgeI | ACCGGT | 1 cut(s) | 29 |
| AjiI | CACGTC | 1 cut(s) | 91 |
| AjnI | CCWGG | 7 cut(s) | 158, 379, 1384, 1598, 2734, 3294, 3529 |
| AleI | CACNNNNGTG | 1 cut(s) | 430 |
| Alw21I | GWGCWC | 2 cut(s) | 1479, 3881 |
| Alw26I | GTCTC | 8 cut(s) | 92, 733, 1177, 1509, 1899, 2209, 2350, 2766 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 675, 755, 2606, 3493, 3817 |
| Ama87I | CYCGRG | 4 cut(s) | 120, 140, 1680, 3769 |
| Aor13HI | TCCGGA | 2 cut(s) | 723, 3185 |
| ApaI | GGGCCC | 1 cut(s) | 3543 |
| AsiGI | ACCGGT | 1 cut(s) | 29 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 192, 236, 2430 |
| AspLEI | GCGC | 1 cut(s) | 3238 |
| AsuC2I | CCSGG | 2 cut(s) | 3336, 3459 |
| AsuNHI | GCTAGC | 1 cut(s) | 3830 |
| AvaI | CYCGRG | 4 cut(s) | 120, 140, 1680, 3769 |
| AvaII | GGWCC | 5 cut(s) | 27, 170, 1381, 3548, 3991 |
| AxyI | CCTNAGG | 1 cut(s) | 2745 |
| BaeGI | GKGCMC | 1 cut(s) | 3543 |
| BalI | TGGCCA | 2 cut(s) | 1152, 1307 |
| BamHI | GGATCC | 1 cut(s) | 497 |
| BanI | GGYRCC | 1 cut(s) | 1430 |
| BanII | GRGCYC | 6 cut(s) | 1479, 1846, 2772, 3543, 3764, 3881 |
| BbsI | GAAGAC | 1 cut(s) | 174 |
| Bbv12I | GWGCWC | 2 cut(s) | 1479, 3881 |
| BbvCI | CCTCAGC | 1 cut(s) | 1939 |
| BceAI | ACGGC | 5 cut(s) | 1429, 1898, 2404, 2629, 3973 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 397, 431, 2985, 3019 |
| BciT130I | CCWGG | 7 cut(s) | 160, 381, 1386, 1600, 2736, 3296, 3531 |
| BciVI | GTATCC | 3 cut(s) | 242, 731, 1240 |
| BclI | TGATCA | 2 cut(s) | 2035, 2518 |
| BcnI | CCSGG | 2 cut(s) | 3336, 3459 |
| BcoDI | GTCTC | 8 cut(s) | 92, 733, 1177, 1509, 1899, 2209, 2350, 2766 |
| BfaI | CTAG | 5 cut(s) | 36, 392, 477, 2337, 3831 |
| BfmI | CTRYAG | 8 cut(s) | 59, 204, 1773, 1902, 2373, 2882, 2900, 3731 |
| BfuAI | ACCTGC | 1 cut(s) | 3745 |
| BfuI | GTATCC | 3 cut(s) | 242, 731, 1240 |
| BglII | AGATCT | 2 cut(s) | 815, 1577 |
| BlpI | GCTNAGC | 2 cut(s) | 3875, 3941 |
| Bme1390I | CCNGG | 9 cut(s) | 160, 381, 1386, 1600, 2736, 3296, 3336, 3459, 3531 |
| Bme18I | GGWCC | 5 cut(s) | 27, 170, 1381, 3548, 3991 |
| BmeT110I | CYCGRG | 4 cut(s) | 120, 140, 1680, 3769 |
| BmgBI | CACGTC | 1 cut(s) | 91 |
| BmrFI | CCNGG | 9 cut(s) | 160, 381, 1386, 1600, 2736, 3296, 3336, 3459, 3531 |
| BmtI | GCTAGC | 1 cut(s) | 3834 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2221 |
| BpiI | GAAGAC | 1 cut(s) | 174 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2151, 2183 |
| BpmI | CTGGAG | 4 cut(s) | 402, 1621, 2813, 2960 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1939, 3880 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 3875, 3941 |
| BpuEI | CTTGAG | 3 cut(s) | 1881, 2748, 2831 |
| BpuMI | CCSGG | 2 cut(s) | 3336, 3459 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2151 |
| BsaHI | GRCGYC | 2 cut(s) | 338, 3245 |
| BsaI | GGTCTC | 1 cut(s) | 2350 |
| BsaWI | WCCGGW | 3 cut(s) | 29, 723, 3185 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 101, 131, 2811, 2841 |
| Bse118I | RCCGGY | 3 cut(s) | 29, 80, 372 |
| Bse1I | ACTGG | 9 cut(s) | 686, 721, 1199, 1277, 1747, 1860, 1891, 1954, 3789 |
| Bse21I | CCTNAGG | 1 cut(s) | 2745 |
| Bse3DI | GCAATG | 6 cut(s) | 1308, 1824, 1950, 2385, 3271, 3894 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2151 |
| BseAI | TCCGGA | 2 cut(s) | 723, 3185 |
| BseBI | CCWGG | 7 cut(s) | 160, 381, 1386, 1600, 2736, 3296, 3531 |
| BseJI | GATNNNNATC | 1 cut(s) | 2151 |
| BseMI | GCAATG | 6 cut(s) | 1308, 1824, 1950, 2385, 3271, 3894 |
| BseNI | ACTGG | 9 cut(s) | 686, 721, 1199, 1277, 1747, 1860, 1891, 1954, 3789 |
| BseSI | GKGCMC | 1 cut(s) | 3543 |
| BseYI | CCCAGC | 6 cut(s) | 1350, 2579, 2777, 2970, 3321, 3428 |
| BsgI | GTGCAG | 1 cut(s) | 1043 |
| BshNI | GGYRCC | 1 cut(s) | 1430 |
| BshTI | ACCGGT | 1 cut(s) | 29 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1479, 3881 |
| BsiHKCI | CYCGRG | 4 cut(s) | 120, 140, 1680, 3769 |
| BsiSI | CCGG | 7 cut(s) | 30, 81, 373, 724, 3186, 3336, 3458 |
| BslFI | GGGAC | 8 cut(s) | 113, 468, 595, 1103, 1402, 3150, 3592, 3909 |
| BsmAI | GTCTC | 8 cut(s) | 92, 733, 1177, 1509, 1899, 2209, 2350, 2766 |
| BsmBI | CGTCTC | 1 cut(s) | 2209 |
| BsmFI | GGGAC | 8 cut(s) | 113, 468, 595, 1103, 1402, 3150, 3592, 3909 |
| BsmI | GAATGC | 2 cut(s) | 1221, 1568 |
| Bso31I | GGTCTC | 1 cut(s) | 2350 |
| BsoBI | CYCGRG | 4 cut(s) | 120, 140, 1680, 3769 |
| Bsp120I | GGGCCC | 1 cut(s) | 3539 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1479, 1846, 2772, 3543, 3764, 3881 |
| Bsp13I | TCCGGA | 2 cut(s) | 723, 3185 |
| Bsp1407I | TGTACA | 1 cut(s) | 3588 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 3875, 3941 |
| Bsp19I | CCATGG | 4 cut(s) | 1255, 3045, 3201, 3543 |
| BspEI | TCCGGA | 2 cut(s) | 723, 3185 |
| BspHI | TCATGA | 1 cut(s) | 1572 |
| BspMAI | CTGCAG | 5 cut(s) | 63, 208, 1777, 1906, 2904 |
| BspMI | ACCTGC | 1 cut(s) | 3745 |
| BspOI | GCTAGC | 1 cut(s) | 3834 |
| BspQI | GCTCTTC | 2 cut(s) | 1434, 2283 |
| BspT107I | GGYRCC | 1 cut(s) | 1430 |
| BspTNI | GGTCTC | 1 cut(s) | 2350 |
| BsrDI | GCAATG | 6 cut(s) | 1308, 1824, 1950, 2385, 3271, 3894 |
| BsrFI | RCCGGY | 3 cut(s) | 29, 80, 372 |
| BsrGI | TGTACA | 1 cut(s) | 3588 |
| BsrI | ACTGG | 9 cut(s) | 686, 721, 1199, 1277, 1747, 1860, 1891, 1954, 3789 |
| BssAI | RCCGGY | 3 cut(s) | 29, 80, 372 |
| BssNAI | GTATAC | 1 cut(s) | 1095 |
| BssNI | GRCGYC | 2 cut(s) | 338, 3245 |
| BssT1I | CCWWGG | 5 cut(s) | 1255, 1434, 3045, 3201, 3543 |
| Bst1107I | GTATAC | 1 cut(s) | 1095 |
| Bst2UI | CCWGG | 7 cut(s) | 160, 381, 1386, 1600, 2736, 3296, 3531 |
| Bst4CI | ACNGT | 8 cut(s) | 757, 824, 1112, 2374, 2478, 2551, 3015, 3618 |
| Bst6I | CTCTTC | 4 cut(s) | 242, 1128, 1434, 2283 |
| BstACI | GRCGYC | 2 cut(s) | 338, 3245 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 2899, 3649, 3697, 3817, 3893 |
| BstAUI | TGTACA | 1 cut(s) | 3588 |
| BstDSI | CCRYGG | 4 cut(s) | 1255, 3045, 3201, 3543 |
| BstEII | GGTNACC | 2 cut(s) | 590, 2074 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3417 |
| BstHHI | GCGC | 1 cut(s) | 3238 |
| BstMAI | GTCTC | 8 cut(s) | 92, 733, 1177, 1509, 1899, 2209, 2350, 2766 |
| BstNI | CCWGG | 7 cut(s) | 160, 381, 1386, 1600, 2736, 3296, 3531 |
| BstNSI | RCATGY | 3 cut(s) | 1568, 3403, 3896 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2221 |
| BstPI | GGTNACC | 2 cut(s) | 590, 2074 |
| BstSCI | CCNGG | 9 cut(s) | 158, 379, 1384, 1598, 2734, 3294, 3334, 3457, 3529 |
| BstSFI | CTRYAG | 8 cut(s) | 59, 204, 1773, 1902, 2373, 2882, 2900, 3731 |
| BstSLI | GKGCMC | 1 cut(s) | 3543 |
| BstV2I | GAAGAC | 1 cut(s) | 174 |
| BstX2I | RGATCY | 8 cut(s) | 497, 649, 815, 926, 1577, 1958, 3230, 3461 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3208 |
| BstYI | RGATCY | 8 cut(s) | 497, 649, 815, 926, 1577, 1958, 3230, 3461 |
| BstZ17I | GTATAC | 1 cut(s) | 1095 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2745 |
| BsuI | GTATCC | 3 cut(s) | 242, 731, 1240 |
| BtgI | CCRYGG | 4 cut(s) | 1255, 3045, 3201, 3543 |
| BtgZI | GCGATG | 1 cut(s) | 1782 |
| BtrI | CACGTC | 1 cut(s) | 91 |
| BtsIMutI | CAGTG | 2 cut(s) | 1486, 1867 |
| BveI | ACCTGC | 1 cut(s) | 3745 |
| CaiI | CAGNNNCTG | 5 cut(s) | 675, 755, 2606, 3493, 3817 |
| CciI | TCATGA | 1 cut(s) | 1572 |
| CfoI | GCGC | 1 cut(s) | 3238 |
| Cfr10I | RCCGGY | 3 cut(s) | 29, 80, 372 |
| CseI | GACGC | 2 cut(s) | 1037, 3253 |
| Csp6I | GTAC | 5 cut(s) | 33, 903, 2370, 2383, 3589 |
| CspAI | ACCGGT | 1 cut(s) | 29 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1183, 1218 |
| CviQI | GTAC | 5 cut(s) | 33, 903, 2370, 2383, 3589 |
| EaeI | YGGCCR | 3 cut(s) | 370, 1150, 1305 |
| Eam1104I | CTCTTC | 4 cut(s) | 242, 1128, 1434, 2283 |
| EarI | CTCTTC | 4 cut(s) | 242, 1128, 1434, 2283 |
| EciI | GGCGGA | 1 cut(s) | 2474 |
| Ecl136II | GAGCTC | 2 cut(s) | 1477, 3879 |
| Eco130I | CCWWGG | 5 cut(s) | 1255, 1434, 3045, 3201, 3543 |
| Eco24I | GRGCYC | 6 cut(s) | 1479, 1846, 2772, 3543, 3764, 3881 |
| Eco31I | GGTCTC | 1 cut(s) | 2350 |
| Eco32I | GATATC | 2 cut(s) | 556, 2122 |
| Eco47I | GGWCC | 5 cut(s) | 27, 170, 1381, 3548, 3991 |
| Eco53kI | GAGCTC | 2 cut(s) | 1477, 3879 |
| Eco57I | CTGAAG | 1 cut(s) | 207 |
| Eco81I | CCTNAGG | 1 cut(s) | 2745 |
| Eco88I | CYCGRG | 4 cut(s) | 120, 140, 1680, 3769 |
| Eco91I | GGTNACC | 2 cut(s) | 590, 2074 |
| EcoICRI | GAGCTC | 2 cut(s) | 1477, 3879 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3417 |
| EcoO109I | RGGNCCY | 3 cut(s) | 473, 1381, 3539 |
| EcoO65I | GGTNACC | 2 cut(s) | 590, 2074 |
| EcoRI | GAATTC | 4 cut(s) | 1314, 1335, 2782, 3025 |
| EcoRII | CCWGG | 7 cut(s) | 158, 379, 1384, 1598, 2734, 3294, 3529 |
| EcoRV | GATATC | 2 cut(s) | 556, 2122 |
| EcoT14I | CCWWGG | 5 cut(s) | 1255, 1434, 3045, 3201, 3543 |
| EcoT22I | ATGCAT | 4 cut(s) | 1057, 1570, 3456, 3894 |
| EcoT38I | GRGCYC | 6 cut(s) | 1479, 1846, 2772, 3543, 3764, 3881 |
| ErhI | CCWWGG | 5 cut(s) | 1255, 1434, 3045, 3201, 3543 |
| Esp3I | CGTCTC | 1 cut(s) | 2209 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 507, 539 |
| FaqI | GGGAC | 8 cut(s) | 113, 468, 595, 1103, 1402, 3150, 3592, 3909 |
| FauI | CCCGC | 4 cut(s) | 567, 2549, 3559, 3934 |
| FauNDI | CATATG | 2 cut(s) | 328, 1242 |
| FbaI | TGATCA | 2 cut(s) | 2035, 2518 |
| FblI | GTMKAC | 1 cut(s) | 1094 |
| FriOI | GRGCYC | 6 cut(s) | 1479, 1846, 2772, 3543, 3764, 3881 |
| FspBI | CTAG | 5 cut(s) | 36, 392, 477, 2337, 3831 |
| GlaI | GCGC | 1 cut(s) | 3237 |
| GsaI | CCCAGC | 6 cut(s) | 1354, 2583, 2781, 2974, 3325, 3432 |
| GsuI | CTGGAG | 4 cut(s) | 402, 1621, 2813, 2960 |
| HapII | CCGG | 7 cut(s) | 30, 81, 373, 724, 3186, 3336, 3458 |
| HgaI | GACGC | 2 cut(s) | 1037, 3253 |
| HhaI | GCGC | 1 cut(s) | 3238 |
| Hin1I | GRCGYC | 2 cut(s) | 338, 3245 |
| Hin6I | GCGC | 1 cut(s) | 3236 |
| HinP1I | GCGC | 1 cut(s) | 3236 |
| HindIII | AAGCTT | 1 cut(s) | 3059 |
| HpaII | CCGG | 7 cut(s) | 30, 81, 373, 724, 3186, 3336, 3458 |
| Hpy166II | GTNNAC | 7 cut(s) | 173, 1095, 1108, 3110, 3551, 3869, 4006 |
| Hpy8I | GTNNAC | 7 cut(s) | 173, 1095, 1108, 3110, 3551, 3869, 4006 |
| Hpy99I | CGWCG | 1 cut(s) | 77 |
| HpyCH4III | ACNGT | 8 cut(s) | 757, 824, 1112, 2374, 2478, 2551, 3015, 3618 |
| HpyCH4IV | ACGT | 4 cut(s) | 75, 90, 338, 2218 |
| HpySE526I | ACGT | 4 cut(s) | 75, 90, 338, 2218 |
| Hsp92I | GRCGYC | 2 cut(s) | 338, 3245 |
| HspAI | GCGC | 1 cut(s) | 3236 |
| Kpn2I | TCCGGA | 2 cut(s) | 723, 3185 |
| Ksp22I | TGATCA | 2 cut(s) | 2035, 2518 |
| LguI | GCTCTTC | 2 cut(s) | 1434, 2283 |
| LmnI | GCTCC | 5 cut(s) | 122, 1841, 1932, 2979, 3212 |
| MaeI | CTAG | 5 cut(s) | 36, 392, 477, 2337, 3831 |
| MaeII | ACGT | 4 cut(s) | 75, 90, 338, 2218 |
| MaeIII | GTNAC | 9 cut(s) | 318, 590, 1158, 1777, 2074, 2229, 2591, 2814, 4013 |
| MfeI | CAATTG | 2 cut(s) | 360, 3695 |
| MflI | RGATCY | 8 cut(s) | 497, 649, 815, 926, 1577, 1958, 3230, 3461 |
| MhlI | GDGCHC | 6 cut(s) | 1479, 1846, 2772, 3543, 3764, 3881 |
| MlsI | TGGCCA | 2 cut(s) | 1152, 1307 |
| MluNI | TGGCCA | 2 cut(s) | 1152, 1307 |
| MlyI | GAGTC | 8 cut(s) | 94, 617, 1384, 1880, 2822, 3484, 3520, 3874 |
| MmeI | TCCRAC | 5 cut(s) | 677, 985, 1936, 1996, 3172 |
| Mox20I | TGGCCA | 2 cut(s) | 1152, 1307 |
| Mph1103I | ATGCAT | 4 cut(s) | 1057, 1570, 3456, 3894 |
| MroI | TCCGGA | 2 cut(s) | 723, 3185 |
| MroXI | GAANNNNTTC | 3 cut(s) | 192, 236, 2430 |
| MscI | TGGCCA | 2 cut(s) | 1152, 1307 |
| MslI | CAYNNNNRTG | 7 cut(s) | 303, 327, 430, 873, 1146, 2723, 3206 |
| Msp20I | TGGCCA | 2 cut(s) | 1152, 1307 |
| MspA1I | CMGCKG | 6 cut(s) | 562, 1772, 2033, 2606, 3817, 3874 |
| MspI | CCGG | 7 cut(s) | 30, 81, 373, 724, 3186, 3336, 3458 |
| MspR9I | CCNGG | 9 cut(s) | 160, 381, 1386, 1600, 2736, 3296, 3336, 3459, 3531 |
| MunI | CAATTG | 2 cut(s) | 360, 3695 |
| Mva1269I | GAATGC | 2 cut(s) | 1221, 1568 |
| MvaI | CCWGG | 7 cut(s) | 160, 381, 1386, 1600, 2736, 3296, 3531 |
| NciI | CCSGG | 2 cut(s) | 3336, 3459 |
| NcoI | CCATGG | 4 cut(s) | 1255, 3045, 3201, 3543 |
| NdeI | CATATG | 2 cut(s) | 328, 1242 |
| NheI | GCTAGC | 1 cut(s) | 3830 |
| NmeAIII | GCCGAG | 1 cut(s) | 2446 |
| NmuCI | GTSAC | 5 cut(s) | 590, 1158, 2074, 2229, 2814 |
| NsiI | ATGCAT | 4 cut(s) | 1057, 1570, 3456, 3894 |
| NspI | RCATGY | 3 cut(s) | 1568, 3403, 3896 |
| OliI | CACNNNNGTG | 1 cut(s) | 430 |
| PaeI | GCATGC | 2 cut(s) | 1568, 3896 |
| PaeR7I | CTCGAG | 1 cut(s) | 140 |
| PagI | TCATGA | 1 cut(s) | 1572 |
| PaqCI | CACCTGC | 1 cut(s) | 3745 |
| PasI | CCCWGGG | 1 cut(s) | 1385 |
| PciSI | GCTCTTC | 2 cut(s) | 1434, 2283 |
| PctI | GAATGC | 2 cut(s) | 1221, 1568 |
| PdmI | GAANNNNTTC | 3 cut(s) | 192, 236, 2430 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2366 |
| PfoI | TCCNGGA | 3 cut(s) | 1598, 2734, 3457 |
| PinAI | ACCGGT | 1 cut(s) | 29 |
| PleI | GAGTC | 8 cut(s) | 94, 616, 1383, 1879, 2821, 3484, 3519, 3873 |
| PpsI | GAGTC | 8 cut(s) | 94, 616, 1383, 1879, 2821, 3484, 3519, 3873 |
| PpuMI | RGGWCCY | 1 cut(s) | 1381 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2221 |
| Psp124BI | GAGCTC | 2 cut(s) | 1479, 3881 |
| Psp5II | RGGWCCY | 1 cut(s) | 1381 |
| Psp6I | CCWGG | 7 cut(s) | 158, 379, 1384, 1598, 2734, 3294, 3529 |
| PspEI | GGTNACC | 2 cut(s) | 590, 2074 |
| PspFI | CCCAGC | 6 cut(s) | 1350, 2579, 2777, 2970, 3321, 3428 |
| PspGI | CCWGG | 7 cut(s) | 158, 379, 1384, 1598, 2734, 3294, 3529 |
| PspOMI | GGGCCC | 1 cut(s) | 3539 |
| PspPPI | RGGWCCY | 1 cut(s) | 1381 |
| PspXI | VCTCGAGB | 1 cut(s) | 140 |
| PstI | CTGCAG | 5 cut(s) | 63, 208, 1777, 1906, 2904 |
| PstNI | CAGNNNCTG | 5 cut(s) | 675, 755, 2606, 3493, 3817 |
| PsuI | RGATCY | 8 cut(s) | 497, 649, 815, 926, 1577, 1958, 3230, 3461 |
| PvuII | CAGCTG | 4 cut(s) | 1772, 2606, 3817, 3874 |
| RsaI | GTAC | 5 cut(s) | 34, 904, 2371, 2384, 3590 |
| RsaNI | GTAC | 5 cut(s) | 33, 903, 2370, 2383, 3589 |
| RseI | CAYNNNNRTG | 7 cut(s) | 303, 327, 430, 873, 1146, 2723, 3206 |
| SacI | GAGCTC | 2 cut(s) | 1479, 3881 |
| SapI | GCTCTTC | 2 cut(s) | 1434, 2283 |
| SchI | GAGTC | 8 cut(s) | 94, 617, 1384, 1880, 2822, 3484, 3520, 3874 |
| ScrFI | CCNGG | 9 cut(s) | 160, 381, 1386, 1600, 2736, 3296, 3336, 3459, 3531 |
| SduI | GDGCHC | 6 cut(s) | 1479, 1846, 2772, 3543, 3764, 3881 |
| SfcI | CTRYAG | 8 cut(s) | 59, 204, 1773, 1902, 2373, 2882, 2900, 3731 |
| Sfr274I | CTCGAG | 1 cut(s) | 140 |
| SinI | GGWCC | 5 cut(s) | 27, 170, 1381, 3548, 3991 |
| SlaI | CTCGAG | 1 cut(s) | 140 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 303, 327, 430, 873, 1146, 2723, 3206 |
| SmlI | CTYRAG | 4 cut(s) | 140, 1896, 2763, 2810 |
| SmoI | CTYRAG | 4 cut(s) | 140, 1896, 2763, 2810 |
| SphI | GCATGC | 2 cut(s) | 1568, 3896 |
| SspI | AATATT | 2 cut(s) | 618, 3307 |
| SspMI | CTAG | 5 cut(s) | 36, 392, 477, 2337, 3831 |
| SstI | GAGCTC | 2 cut(s) | 1479, 3881 |
| StyD4I | CCNGG | 9 cut(s) | 158, 379, 1384, 1598, 2734, 3294, 3334, 3457, 3529 |
| StyI | CCWWGG | 5 cut(s) | 1255, 1434, 3045, 3201, 3543 |
| TaaI | ACNGT | 8 cut(s) | 757, 824, 1112, 2374, 2478, 2551, 3015, 3618 |
| TaiI | ACGT | 4 cut(s) | 78, 93, 341, 2221 |
| TaqI | TCGA | 7 cut(s) | 141, 417, 702, 1530, 2158, 2225, 2786 |
| TaqII | GACCGA | 3 cut(s) | 902, 959, 1508 |
| TatI | WGTACW | 3 cut(s) | 902, 2382, 3588 |
| TauI | GCSGC | 4 cut(s) | 55, 1796, 3399, 3751 |
| TscAI | CASTG | 2 cut(s) | 1486, 1867 |
| TseFI | GTSAC | 5 cut(s) | 590, 1158, 2074, 2229, 2814 |
| Tsp45I | GTSAC | 5 cut(s) | 590, 1158, 2074, 2229, 2814 |
| TspGWI | ACGGA | 4 cut(s) | 32, 490, 1927, 4020 |
| TspRI | CASTG | 2 cut(s) | 1486, 1867 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2366 |
| VpaK11BI | GGWCC | 5 cut(s) | 27, 170, 1381, 3548, 3991 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3417 |
| XbaI | TCTAGA | 1 cut(s) | 391 |
| XceI | RCATGY | 3 cut(s) | 1568, 3403, 3896 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2452 |
| XhoI | CTCGAG | 1 cut(s) | 140 |
| XmiI | GTMKAC | 1 cut(s) | 1094 |
| XmnI | GAANNNNTTC | 3 cut(s) | 192, 236, 2430 |
| XspI | CTAG | 5 cut(s) | 36, 392, 477, 2337, 3831 |
| ZraI | GACGTC | 1 cut(s) | 339 |
| Zsp2I | ATGCAT | 4 cut(s) | 1057, 1570, 3456, 3894 |