chromatin binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72390 AT1G72390 |
| fragaria_vesca | FvH4_6g35180 FvH4_6g35180 FvH4_6g35180 FvH4_6g35180 |
| malus_domestica | MD09G1178000.v1.1 MD17G1148700.v1.1 |
| prunus_persica | Prupe.3G037300_v2.0.a1 |
| pyrus_communis | pycom09g09640 pycom17g14200 pycom17g14240 |
| rosa_chinensis | RchiOBHm_Chr2g0146441 |
| rosa_laevigata | RLG00000020201 |
| rosa_multiflora | Rmu_sc0001986.1_g000006 Rmu_sc0014617.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00100090 |
| rosa_rugosa | Rorug02G0394400 Rorug02G0394400 Rorug02G0394500 |
| rosa_samantha | Rh2AG451200 Rh2BG463700 Rh2CG438000 Rh2DG472700 |
| rosa_wichuraiana | Rw2G036830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3709 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2132 |
| AatII | GACGTC | 1 cut(s) | 341 |
| Acc36I | ACCTGC | 1 cut(s) | 3709 |
| AccB1I | GGYRCC | 1 cut(s) | 1436 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2378 |
| AccI | GTMKAC | 1 cut(s) | 1100 |
| AccII | CGCG | 1 cut(s) | 3887 |
| AccIII | TCCGGA | 3 cut(s) | 723, 1150, 3245 |
| AcoI | YGGCCR | 2 cut(s) | 370, 1210 |
| AcuI | CTGAAG | 1 cut(s) | 207 |
| AcyI | GRCGYC | 2 cut(s) | 338, 3236 |
| AfaI | GTAC | 7 cut(s) | 34, 484, 910, 981, 2383, 2396, 3578 |
| AflIII | ACRYGT | 1 cut(s) | 90 |
| AgeI | ACCGGT | 1 cut(s) | 29 |
| AjiI | CACGTC | 1 cut(s) | 91 |
| AjnI | CCWGG | 9 cut(s) | 379, 853, 1036, 1390, 1604, 2746, 3285, 3445, 3517 |
| AleI | CACNNNNGTG | 1 cut(s) | 430 |
| Alw21I | GWGCWC | 2 cut(s) | 1485, 3839 |
| Alw26I | GTCTC | 8 cut(s) | 92, 1183, 1451, 1515, 1905, 2221, 2362, 2778 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 675, 3481 |
| Ama87I | CYCGRG | 3 cut(s) | 120, 140, 3733 |
| Aor13HI | TCCGGA | 3 cut(s) | 723, 1150, 3245 |
| ApaI | GGGCCC | 1 cut(s) | 477 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2779, 2811 |
| AseI | ATTAAT | 1 cut(s) | 1823 |
| AsiGI | ACCGGT | 1 cut(s) | 29 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 192, 236, 2442 |
| AspLEI | GCGC | 1 cut(s) | 3229 |
| AsuC2I | CCSGG | 3 cut(s) | 160, 477, 3426 |
| AsuHPI | GGTGA | 9 cut(s) | 158, 602, 1056, 1158, 1544, 2092, 2429, 3062, 3681 |
| AsuNHI | GCTAGC | 1 cut(s) | 3788 |
| AvaI | CYCGRG | 3 cut(s) | 120, 140, 3733 |
| AvaII | GGWCC | 6 cut(s) | 170, 1033, 1387, 1760, 3536, 3949 |
| AxyI | CCTNAGG | 1 cut(s) | 2757 |
| BaeGI | GKGCMC | 2 cut(s) | 477, 3413 |
| BalI | TGGCCA | 1 cut(s) | 1212 |
| BamHI | GGATCC | 1 cut(s) | 497 |
| BanI | GGYRCC | 1 cut(s) | 1436 |
| BanII | GRGCYC | 7 cut(s) | 477, 1485, 2598, 2784, 3728, 3839, 3893 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 779, 811 |
| BbsI | GAAGAC | 1 cut(s) | 174 |
| Bbv12I | GWGCWC | 2 cut(s) | 1485, 3839 |
| BbvCI | CCTCAGC | 1 cut(s) | 1945 |
| BceAI | ACGGC | 6 cut(s) | 1435, 1904, 2416, 2641, 3567, 3931 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 397, 431, 2976, 3010 |
| BciT130I | CCWGG | 9 cut(s) | 381, 855, 1038, 1392, 1606, 2748, 3287, 3447, 3519 |
| BclI | TGATCA | 2 cut(s) | 2041, 2355 |
| BcnI | CCSGG | 3 cut(s) | 160, 477, 3426 |
| BcoDI | GTCTC | 8 cut(s) | 92, 1183, 1451, 1515, 1905, 2221, 2362, 2778 |
| BfaI | CTAG | 5 cut(s) | 36, 392, 1176, 2349, 3789 |
| BfmI | CTRYAG | 9 cut(s) | 59, 204, 826, 1410, 1779, 1794, 2385, 2879, 3695 |
| BfuAI | ACCTGC | 1 cut(s) | 3709 |
| BglII | AGATCT | 1 cut(s) | 1583 |
| BlpI | GCTNAGC | 2 cut(s) | 3833, 3899 |
| Bme18I | GGWCC | 6 cut(s) | 170, 1033, 1387, 1760, 3536, 3949 |
| BmeT110I | CYCGRG | 3 cut(s) | 120, 140, 3733 |
| BmgBI | CACGTC | 1 cut(s) | 91 |
| BmrI | ACTGGG | 1 cut(s) | 1067 |
| BmtI | GCTAGC | 1 cut(s) | 3792 |
| BmuI | ACTGGG | 1 cut(s) | 1067 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1162, 2233 |
| BpiI | GAAGAC | 1 cut(s) | 174 |
| BpmI | CTGGAG | 3 cut(s) | 402, 1627, 2951 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1945, 3151, 3838 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 3833, 3899 |
| BpuEI | CTTGAG | 2 cut(s) | 1887, 2760 |
| BpuMI | CCSGG | 3 cut(s) | 160, 477, 3426 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2163 |
| BsaHI | GRCGYC | 2 cut(s) | 338, 3236 |
| BsaI | GGTCTC | 2 cut(s) | 2221, 2362 |
| BsaWI | WCCGGW | 4 cut(s) | 29, 723, 1150, 3245 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 101, 131 |
| Bse118I | RCCGGY | 2 cut(s) | 29, 372 |
| Bse21I | CCTNAGG | 1 cut(s) | 2757 |
| Bse3DI | GCAATG | 9 cut(s) | 1314, 1383, 1956, 2397, 2450, 3262, 3471, 3510, 3852 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2163 |
| BseAI | TCCGGA | 3 cut(s) | 723, 1150, 3245 |
| BseBI | CCWGG | 9 cut(s) | 381, 855, 1038, 1392, 1606, 2748, 3287, 3447, 3519 |
| BseJI | GATNNNNATC | 1 cut(s) | 2163 |
| BseMI | GCAATG | 9 cut(s) | 1314, 1383, 1956, 2397, 2450, 3262, 3471, 3510, 3852 |
| BseSI | GKGCMC | 2 cut(s) | 477, 3413 |
| BseYI | CCCAGC | 3 cut(s) | 1356, 2961, 3312 |
| BsgI | GTGCAG | 1 cut(s) | 1049 |
| Bsh1236I | CGCG | 1 cut(s) | 3887 |
| BshNI | GGYRCC | 1 cut(s) | 1436 |
| BshTI | ACCGGT | 1 cut(s) | 29 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1485, 3839 |
| BsiHKCI | CYCGRG | 3 cut(s) | 120, 140, 3733 |
| BsiSI | CCGG | 8 cut(s) | 30, 159, 373, 477, 724, 1151, 3246, 3425 |
| BslFI | GGGAC | 7 cut(s) | 113, 595, 1109, 1408, 3141, 3580, 3867 |
| BsmAI | GTCTC | 8 cut(s) | 92, 1183, 1451, 1515, 1905, 2221, 2362, 2778 |
| BsmFI | GGGAC | 7 cut(s) | 113, 595, 1109, 1408, 3141, 3580, 3867 |
| BsmI | GAATGC | 6 cut(s) | 141, 1227, 1341, 1574, 2150, 2574 |
| Bso31I | GGTCTC | 2 cut(s) | 2221, 2362 |
| BsoBI | CYCGRG | 3 cut(s) | 120, 140, 3733 |
| Bsp120I | GGGCCC | 1 cut(s) | 473 |
| Bsp1286I | GDGCHC | 8 cut(s) | 477, 1485, 2598, 2784, 3413, 3728, 3839, 3893 |
| Bsp13I | TCCGGA | 3 cut(s) | 723, 1150, 3245 |
| Bsp1407I | TGTACA | 1 cut(s) | 3576 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 3833, 3899 |
| Bsp19I | CCATGG | 3 cut(s) | 493, 1261, 3036 |
| BspEI | TCCGGA | 3 cut(s) | 723, 1150, 3245 |
| BspFNI | CGCG | 1 cut(s) | 3887 |
| BspHI | TCATGA | 2 cut(s) | 1578, 2784 |
| BspMAI | CTGCAG | 3 cut(s) | 63, 208, 1783 |
| BspMI | ACCTGC | 1 cut(s) | 3709 |
| BspOI | GCTAGC | 1 cut(s) | 3792 |
| BspQI | GCTCTTC | 2 cut(s) | 1440, 2295 |
| BspT107I | GGYRCC | 1 cut(s) | 1436 |
| BspTNI | GGTCTC | 2 cut(s) | 2221, 2362 |
| BsrDI | GCAATG | 9 cut(s) | 1314, 1383, 1956, 2397, 2450, 3262, 3471, 3510, 3852 |
| BsrFI | RCCGGY | 2 cut(s) | 29, 372 |
| BsrGI | TGTACA | 1 cut(s) | 3576 |
| BssAI | RCCGGY | 2 cut(s) | 29, 372 |
| BssNAI | GTATAC | 1 cut(s) | 1101 |
| BssNI | GRCGYC | 2 cut(s) | 338, 3236 |
| BssT1I | CCWWGG | 4 cut(s) | 493, 1261, 1440, 3036 |
| Bst1107I | GTATAC | 1 cut(s) | 1101 |
| Bst2UI | CCWGG | 9 cut(s) | 381, 855, 1038, 1392, 1606, 2748, 3287, 3447, 3519 |
| Bst6I | CTCTTC | 4 cut(s) | 242, 1134, 1440, 2295 |
| BstACI | GRCGYC | 2 cut(s) | 338, 3236 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3661 |
| BstAUI | TGTACA | 1 cut(s) | 3576 |
| BstDSI | CCRYGG | 4 cut(s) | 493, 1261, 3036, 3978 |
| BstEII | GGTNACC | 3 cut(s) | 590, 2080, 3983 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1041 |
| BstFNI | CGCG | 1 cut(s) | 3887 |
| BstHHI | GCGC | 1 cut(s) | 3229 |
| BstMAI | GTCTC | 8 cut(s) | 92, 1183, 1451, 1515, 1905, 2221, 2362, 2778 |
| BstNI | CCWGG | 9 cut(s) | 381, 855, 1038, 1392, 1606, 2748, 3287, 3447, 3519 |
| BstNSI | RCATGY | 4 cut(s) | 878, 1574, 3028, 3391 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1162, 2233 |
| BstPI | GGTNACC | 3 cut(s) | 590, 2080, 3983 |
| BstSFI | CTRYAG | 9 cut(s) | 59, 204, 826, 1410, 1779, 1794, 2385, 2879, 3695 |
| BstSLI | GKGCMC | 2 cut(s) | 477, 3413 |
| BstUI | CGCG | 1 cut(s) | 3887 |
| BstV2I | GAAGAC | 1 cut(s) | 174 |
| BstX2I | RGATCY | 7 cut(s) | 497, 649, 932, 1583, 1964, 3221, 3449 |
| BstYI | RGATCY | 7 cut(s) | 497, 649, 932, 1583, 1964, 3221, 3449 |
| BstZ17I | GTATAC | 1 cut(s) | 1101 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2757 |
| BtgI | CCRYGG | 4 cut(s) | 493, 1261, 3036, 3978 |
| BtgZI | GCGATG | 1 cut(s) | 99 |
| BtrI | CACGTC | 1 cut(s) | 91 |
| BtsI | GCAGTG | 1 cut(s) | 68 |
| BtsIMutI | CAGTG | 7 cut(s) | 68, 279, 560, 1873, 1981, 2498, 2796 |
| BveI | ACCTGC | 1 cut(s) | 3709 |
| CaiI | CAGNNNCTG | 2 cut(s) | 675, 3481 |
| CciI | TCATGA | 2 cut(s) | 1578, 2784 |
| CfoI | GCGC | 1 cut(s) | 3229 |
| Cfr10I | RCCGGY | 2 cut(s) | 29, 372 |
| CseI | GACGC | 1 cut(s) | 3244 |
| Csp6I | GTAC | 7 cut(s) | 33, 483, 909, 980, 2382, 2395, 3577 |
| CspAI | ACCGGT | 1 cut(s) | 29 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1189, 1224 |
| CviQI | GTAC | 7 cut(s) | 33, 483, 909, 980, 2382, 2395, 3577 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2132 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2132 |
| EaeI | YGGCCR | 2 cut(s) | 370, 1210 |
| Eam1104I | CTCTTC | 4 cut(s) | 242, 1134, 1440, 2295 |
| EarI | CTCTTC | 4 cut(s) | 242, 1134, 1440, 2295 |
| EciI | GGCGGA | 1 cut(s) | 3699 |
| Ecl136II | GAGCTC | 2 cut(s) | 1483, 3837 |
| Eco130I | CCWWGG | 4 cut(s) | 493, 1261, 1440, 3036 |
| Eco147I | AGGCCT | 1 cut(s) | 2762 |
| Eco24I | GRGCYC | 7 cut(s) | 477, 1485, 2598, 2784, 3728, 3839, 3893 |
| Eco31I | GGTCTC | 2 cut(s) | 2221, 2362 |
| Eco32I | GATATC | 1 cut(s) | 556 |
| Eco47I | GGWCC | 6 cut(s) | 170, 1033, 1387, 1760, 3536, 3949 |
| Eco53kI | GAGCTC | 2 cut(s) | 1483, 3837 |
| Eco57I | CTGAAG | 1 cut(s) | 207 |
| Eco81I | CCTNAGG | 1 cut(s) | 2757 |
| Eco88I | CYCGRG | 3 cut(s) | 120, 140, 3733 |
| Eco91I | GGTNACC | 3 cut(s) | 590, 2080, 3983 |
| EcoICRI | GAGCTC | 2 cut(s) | 1483, 3837 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1041 |
| EcoO109I | RGGNCCY | 5 cut(s) | 473, 1033, 1387, 1760, 3527 |
| EcoO65I | GGTNACC | 3 cut(s) | 590, 2080, 3983 |
| EcoRI | GAATTC | 3 cut(s) | 1320, 2794, 3016 |
| EcoRII | CCWGG | 9 cut(s) | 379, 853, 1036, 1390, 1604, 2746, 3285, 3445, 3517 |
| EcoRV | GATATC | 1 cut(s) | 556 |
| EcoT14I | CCWWGG | 4 cut(s) | 493, 1261, 1440, 3036 |
| EcoT22I | ATGCAT | 5 cut(s) | 1063, 1576, 2152, 3444, 3852 |
| EcoT38I | GRGCYC | 7 cut(s) | 477, 1485, 2598, 2784, 3728, 3839, 3893 |
| ErhI | CCWWGG | 4 cut(s) | 493, 1261, 1440, 3036 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 180, 212, 507, 539 |
| FaqI | GGGAC | 7 cut(s) | 113, 595, 1109, 1408, 3141, 3580, 3867 |
| FauI | CCCGC | 4 cut(s) | 2561, 3547, 3594, 3892 |
| FauNDI | CATATG | 2 cut(s) | 328, 1248 |
| FbaI | TGATCA | 2 cut(s) | 2041, 2355 |
| FblI | GTMKAC | 1 cut(s) | 1100 |
| FriOI | GRGCYC | 7 cut(s) | 477, 1485, 2598, 2784, 3728, 3839, 3893 |
| FspBI | CTAG | 5 cut(s) | 36, 392, 1176, 2349, 3789 |
| GlaI | GCGC | 1 cut(s) | 3228 |
| GsaI | CCCAGC | 3 cut(s) | 1360, 2965, 3316 |
| GsuI | CTGGAG | 3 cut(s) | 402, 1627, 2951 |
| HapII | CCGG | 8 cut(s) | 30, 159, 373, 477, 724, 1151, 3246, 3425 |
| HgaI | GACGC | 1 cut(s) | 3244 |
| HhaI | GCGC | 1 cut(s) | 3229 |
| Hin1I | GRCGYC | 2 cut(s) | 338, 3236 |
| Hin6I | GCGC | 1 cut(s) | 3227 |
| HinP1I | GCGC | 1 cut(s) | 3227 |
| HindIII | AAGCTT | 3 cut(s) | 624, 3050, 3148 |
| HpaII | CCGG | 8 cut(s) | 30, 159, 373, 477, 724, 1151, 3246, 3425 |
| HphI | GGTGA | 9 cut(s) | 158, 602, 1056, 1158, 1544, 2092, 2429, 3062, 3681 |
| Hpy166II | GTNNAC | 6 cut(s) | 796, 1101, 1114, 2498, 3539, 3827 |
| Hpy8I | GTNNAC | 6 cut(s) | 796, 1101, 1114, 2498, 3539, 3827 |
| Hpy99I | CGWCG | 1 cut(s) | 77 |
| HpyCH4IV | ACGT | 3 cut(s) | 75, 90, 338 |
| HpySE526I | ACGT | 3 cut(s) | 75, 90, 338 |
| Hsp92I | GRCGYC | 2 cut(s) | 338, 3236 |
| HspAI | GCGC | 1 cut(s) | 3227 |
| Kpn2I | TCCGGA | 3 cut(s) | 723, 1150, 3245 |
| Ksp22I | TGATCA | 2 cut(s) | 2041, 2355 |
| LguI | GCTCTTC | 2 cut(s) | 1440, 2295 |
| LmnI | GCTCC | 6 cut(s) | 122, 1772, 1938, 2601, 2970, 3203 |
| MaeI | CTAG | 5 cut(s) | 36, 392, 1176, 2349, 3789 |
| MaeII | ACGT | 3 cut(s) | 75, 90, 338 |
| MfeI | CAATTG | 4 cut(s) | 360, 989, 3644, 3659 |
| MflI | RGATCY | 7 cut(s) | 497, 649, 932, 1583, 1964, 3221, 3449 |
| MhlI | GDGCHC | 8 cut(s) | 477, 1485, 2598, 2784, 3413, 3728, 3839, 3893 |
| MlsI | TGGCCA | 1 cut(s) | 1212 |
| MluNI | TGGCCA | 1 cut(s) | 1212 |
| MlyI | GAGTC | 8 cut(s) | 617, 1390, 1886, 2648, 2834, 3106, 3472, 3832 |
| Mox20I | TGGCCA | 1 cut(s) | 1212 |
| Mph1103I | ATGCAT | 5 cut(s) | 1063, 1576, 2152, 3444, 3852 |
| MroI | TCCGGA | 3 cut(s) | 723, 1150, 3245 |
| MroXI | GAANNNNTTC | 3 cut(s) | 192, 236, 2442 |
| MscI | TGGCCA | 1 cut(s) | 1212 |
| MseI | TTAA | 9 cut(s) | 15, 525, 1182, 1494, 1823, 2702, 3281, 3308, 3335 |
| MslI | CAYNNNNRTG | 7 cut(s) | 303, 327, 430, 879, 1152, 2735, 2789 |
| Msp20I | TGGCCA | 1 cut(s) | 1212 |
| MspA1I | CMGCKG | 4 cut(s) | 1778, 2039, 2471, 3832 |
| MspI | CCGG | 8 cut(s) | 30, 159, 373, 477, 724, 1151, 3246, 3425 |
| MunI | CAATTG | 4 cut(s) | 360, 989, 3644, 3659 |
| Mva1269I | GAATGC | 6 cut(s) | 141, 1227, 1341, 1574, 2150, 2574 |
| MvaI | CCWGG | 9 cut(s) | 381, 855, 1038, 1392, 1606, 2748, 3287, 3447, 3519 |
| MvnI | CGCG | 1 cut(s) | 3887 |
| NciI | CCSGG | 3 cut(s) | 160, 477, 3426 |
| NcoI | CCATGG | 3 cut(s) | 493, 1261, 3036 |
| NdeI | CATATG | 2 cut(s) | 328, 1248 |
| NheI | GCTAGC | 1 cut(s) | 3788 |
| NmeAIII | GCCGAG | 1 cut(s) | 2458 |
| NmuCI | GTSAC | 6 cut(s) | 590, 760, 1164, 2080, 2241, 2826 |
| NsiI | ATGCAT | 5 cut(s) | 1063, 1576, 2152, 3444, 3852 |
| NspI | RCATGY | 4 cut(s) | 878, 1574, 3028, 3391 |
| OliI | CACNNNNGTG | 1 cut(s) | 430 |
| PaeI | GCATGC | 2 cut(s) | 878, 1574 |
| PaeR7I | CTCGAG | 1 cut(s) | 140 |
| PagI | TCATGA | 2 cut(s) | 1578, 2784 |
| PaqCI | CACCTGC | 1 cut(s) | 3709 |
| PasI | CCCWGGG | 2 cut(s) | 1391, 3286 |
| PceI | AGGCCT | 1 cut(s) | 2762 |
| PciSI | GCTCTTC | 2 cut(s) | 1440, 2295 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 81 |
| PctI | GAATGC | 6 cut(s) | 141, 1227, 1341, 1574, 2150, 2574 |
| PdmI | GAANNNNTTC | 3 cut(s) | 192, 236, 2442 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2378 |
| PfoI | TCCNGGA | 2 cut(s) | 1604, 3445 |
| PinAI | ACCGGT | 1 cut(s) | 29 |
| PleI | GAGTC | 8 cut(s) | 616, 1389, 1885, 2647, 2833, 3105, 3472, 3831 |
| PpsI | GAGTC | 8 cut(s) | 616, 1389, 1885, 2647, 2833, 3105, 3472, 3831 |
| PpuMI | RGGWCCY | 3 cut(s) | 1033, 1387, 1760 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1162, 2233 |
| PshBI | ATTAAT | 1 cut(s) | 1823 |
| Psp124BI | GAGCTC | 2 cut(s) | 1485, 3839 |
| Psp5II | RGGWCCY | 3 cut(s) | 1033, 1387, 1760 |
| Psp6I | CCWGG | 9 cut(s) | 379, 853, 1036, 1390, 1604, 2746, 3285, 3445, 3517 |
| PspEI | GGTNACC | 3 cut(s) | 590, 2080, 3983 |
| PspFI | CCCAGC | 3 cut(s) | 1356, 2961, 3312 |
| PspGI | CCWGG | 9 cut(s) | 379, 853, 1036, 1390, 1604, 2746, 3285, 3445, 3517 |
| PspOMI | GGGCCC | 1 cut(s) | 473 |
| PspPPI | RGGWCCY | 3 cut(s) | 1033, 1387, 1760 |
| PspXI | VCTCGAGB | 1 cut(s) | 140 |
| PstI | CTGCAG | 3 cut(s) | 63, 208, 1783 |
| PstNI | CAGNNNCTG | 2 cut(s) | 675, 3481 |
| PsuI | RGATCY | 7 cut(s) | 497, 649, 932, 1583, 1964, 3221, 3449 |
| PvuII | CAGCTG | 2 cut(s) | 1778, 3832 |
| RsaI | GTAC | 7 cut(s) | 34, 484, 910, 981, 2383, 2396, 3578 |
| RsaNI | GTAC | 7 cut(s) | 33, 483, 909, 980, 2382, 2395, 3577 |
| RseI | CAYNNNNRTG | 7 cut(s) | 303, 327, 430, 879, 1152, 2735, 2789 |
| SacI | GAGCTC | 2 cut(s) | 1485, 3839 |
| SapI | GCTCTTC | 2 cut(s) | 1440, 2295 |
| SaqAI | TTAA | 9 cut(s) | 15, 525, 1182, 1494, 1823, 2702, 3281, 3308, 3335 |
| SchI | GAGTC | 8 cut(s) | 617, 1390, 1886, 2648, 2834, 3106, 3472, 3832 |
| SduI | GDGCHC | 8 cut(s) | 477, 1485, 2598, 2784, 3413, 3728, 3839, 3893 |
| SfcI | CTRYAG | 9 cut(s) | 59, 204, 826, 1410, 1779, 1794, 2385, 2879, 3695 |
| Sfr274I | CTCGAG | 1 cut(s) | 140 |
| SinI | GGWCC | 6 cut(s) | 170, 1033, 1387, 1760, 3536, 3949 |
| SlaI | CTCGAG | 1 cut(s) | 140 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 303, 327, 430, 879, 1152, 2735, 2789 |
| SmlI | CTYRAG | 3 cut(s) | 140, 1902, 2775 |
| SmoI | CTYRAG | 3 cut(s) | 140, 1902, 2775 |
| SphI | GCATGC | 2 cut(s) | 878, 1574 |
| SseBI | AGGCCT | 1 cut(s) | 2762 |
| SspI | AATATT | 2 cut(s) | 618, 3298 |
| SspMI | CTAG | 5 cut(s) | 36, 392, 1176, 2349, 3789 |
| SstI | GAGCTC | 2 cut(s) | 1485, 3839 |
| StuI | AGGCCT | 1 cut(s) | 2762 |
| StyI | CCWWGG | 4 cut(s) | 493, 1261, 1440, 3036 |
| TaiI | ACGT | 3 cut(s) | 78, 93, 341 |
| TaqI | TCGA | 9 cut(s) | 141, 417, 702, 1536, 1544, 2237, 2798, 2823, 3487 |
| TatI | WGTACW | 3 cut(s) | 908, 2394, 3576 |
| TauI | GCSGC | 2 cut(s) | 55, 84 |
| Tru1I | TTAA | 9 cut(s) | 15, 525, 1182, 1494, 1823, 2702, 3281, 3308, 3335 |
| Tru9I | TTAA | 9 cut(s) | 15, 525, 1182, 1494, 1823, 2702, 3281, 3308, 3335 |
| TscAI | CASTG | 7 cut(s) | 68, 286, 567, 1873, 1981, 2505, 2796 |
| TseFI | GTSAC | 6 cut(s) | 590, 760, 1164, 2080, 2241, 2826 |
| Tsp45I | GTSAC | 6 cut(s) | 590, 760, 1164, 2080, 2241, 2826 |
| TspGWI | ACGGA | 5 cut(s) | 32, 490, 1744, 1933, 3967 |
| TspRI | CASTG | 7 cut(s) | 68, 286, 567, 1873, 1981, 2505, 2796 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2378 |
| VpaK11BI | GGWCC | 6 cut(s) | 170, 1033, 1387, 1760, 3536, 3949 |
| VspI | ATTAAT | 1 cut(s) | 1823 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1041 |
| XbaI | TCTAGA | 1 cut(s) | 391 |
| XceI | RCATGY | 4 cut(s) | 878, 1574, 3028, 3391 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3247 |
| XhoI | CTCGAG | 1 cut(s) | 140 |
| XmiI | GTMKAC | 1 cut(s) | 1100 |
| XmnI | GAANNNNTTC | 3 cut(s) | 192, 236, 2442 |
| XspI | CTAG | 5 cut(s) | 36, 392, 1176, 2349, 3789 |
| ZraI | GACGTC | 1 cut(s) | 339 |
| Zsp2I | ATGCAT | 5 cut(s) | 1063, 1576, 2152, 3444, 3852 |