chromatin binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72390 AT1G72390 |
| fragaria_vesca | FvH4_6g35180 FvH4_6g35180 FvH4_6g35180 FvH4_6g35180 |
| malus_domestica | MD09G1178000.v1.1 MD17G1148700.v1.1 |
| prunus_persica | Prupe.3G037300_v2.0.a1 |
| pyrus_communis | pycom09g09640 pycom17g14200 pycom17g14240 |
| rosa_chinensis | RchiOBHm_Chr2g0146441 |
| rosa_laevigata | RLG00000020201 |
| rosa_multiflora | Rmu_sc0001986.1_g000006 Rmu_sc0014617.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00100090 |
| rosa_rugosa | Rorug02G0394400 Rorug02G0394400 Rorug02G0394500 |
| rosa_samantha | Rh2AG451200 Rh2BG463700 Rh2CG438000 Rh2DG472700 |
| rosa_wichuraiana | Rw2G036830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 923 |
| AccB1I | GGYRCC | 3 cut(s) | 923, 1238, 1408 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2174 |
| AccI | GTMKAC | 1 cut(s) | 547 |
| AccII | CGCG | 1 cut(s) | 737 |
| AclWI | GGATC | 8 cut(s) | 318, 331, 470, 859, 1078, 1386, 1777, 3337 |
| AcoI | YGGCCR | 1 cut(s) | 1776 |
| AcuI | CTGAAG | 2 cut(s) | 45, 2618 |
| AfaI | GTAC | 6 cut(s) | 239, 925, 2179, 2192, 2304, 2904 |
| AfeI | AGCGCT | 1 cut(s) | 30 |
| AflII | CTTAAG | 1 cut(s) | 751 |
| AgeI | ACCGGT | 1 cut(s) | 3872 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 863 |
| AjiI | CACGTC | 1 cut(s) | 2603 |
| AleI | CACNNNNGTG | 1 cut(s) | 256 |
| Alw21I | GWGCWC | 5 cut(s) | 1287, 1637, 3635, 3737, 3803 |
| Alw26I | GTCTC | 7 cut(s) | 41, 441, 991, 1253, 1527, 1985, 2571 |
| AlwI | GGATC | 8 cut(s) | 318, 331, 470, 859, 1078, 1386, 1777, 3337 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 50, 860, 1643, 3361 |
| Ama87I | CYCGRG | 1 cut(s) | 3770 |
| Aor51HI | AGCGCT | 1 cut(s) | 30 |
| AoxI | GGCC | 9 cut(s) | 300, 566, 703, 968, 1018, 1049, 1776, 2553, 3398 |
| AseI | ATTAAT | 1 cut(s) | 2475 |
| AsiGI | ACCGGT | 1 cut(s) | 3872 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1834 |
| Asp718I | GGTACC | 1 cut(s) | 923 |
| AspLEI | GCGC | 2 cut(s) | 31, 737 |
| AsuC2I | CCSGG | 1 cut(s) | 1495 |
| AsuHPI | GGTGA | 5 cut(s) | 428, 969, 2225, 3588, 3640 |
| AsuII | TTCGAA | 1 cut(s) | 1994 |
| AsuNHI | GCTAGC | 1 cut(s) | 3686 |
| AvaI | CYCGRG | 1 cut(s) | 3770 |
| AvaII | GGWCC | 9 cut(s) | 343, 844, 857, 1005, 1568, 3057, 3277, 3407, 3847 |
| AxyI | CCTNAGG | 1 cut(s) | 2133 |
| BaeGI | GKGCMC | 1 cut(s) | 1180 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 907, 940 |
| BamHI | GGATCC | 1 cut(s) | 323 |
| BanI | GGYRCC | 3 cut(s) | 923, 1238, 1408 |
| BanII | GRGCYC | 7 cut(s) | 1287, 1637, 2033, 2577, 3635, 3737, 3803 |
| BauI | CACGAG | 1 cut(s) | 2524 |
| Bbv12I | GWGCWC | 5 cut(s) | 1287, 1637, 3635, 3737, 3803 |
| BbvCI | CCTCAGC | 4 cut(s) | 1009, 1750, 2787, 3576 |
| BceAI | ACGGC | 1 cut(s) | 1189 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 127, 161, 2515, 2549 |
| BciVI | GTATCC | 1 cut(s) | 1133 |
| BclI | TGATCA | 2 cut(s) | 717, 2151 |
| BcnI | CCSGG | 1 cut(s) | 1495 |
| BcoDI | GTCTC | 7 cut(s) | 41, 441, 991, 1253, 1527, 1985, 2571 |
| BfaI | CTAG | 4 cut(s) | 473, 1938, 2222, 3687 |
| BfmI | CTRYAG | 7 cut(s) | 42, 1053, 1212, 1563, 2181, 2406, 3602 |
| BfoI | RGCGCY | 1 cut(s) | 32 |
| BfrI | CTTAAG | 1 cut(s) | 751 |
| BfuI | GTATCC | 1 cut(s) | 1133 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1604 |
| BglII | AGATCT | 1 cut(s) | 755 |
| BlpI | GCTNAGC | 2 cut(s) | 3731, 3797 |
| Bme18I | GGWCC | 9 cut(s) | 343, 844, 857, 1005, 1568, 3057, 3277, 3407, 3847 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 863 |
| BmeT110I | CYCGRG | 1 cut(s) | 3770 |
| BmgBI | CACGTC | 1 cut(s) | 2603 |
| BmrI | ACTGGG | 1 cut(s) | 1515 |
| BmtI | GCTAGC | 1 cut(s) | 3690 |
| BmuI | ACTGGG | 1 cut(s) | 1515 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1003 |
| BpmI | CTGGAG | 2 cut(s) | 228, 2816 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1009, 1750, 2787, 3576, 3736 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 3731, 3797 |
| Bpu14I | TTCGAA | 1 cut(s) | 1994 |
| BpuEI | CTTGAG | 1 cut(s) | 2553 |
| BpuMI | CCSGG | 1 cut(s) | 1495 |
| BsaBI | GATNNNNATC | 1 cut(s) | 902 |
| BsaI | GGTCTC | 1 cut(s) | 991 |
| BsaWI | WCCGGW | 1 cut(s) | 3872 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 400, 430, 1451, 1481 |
| Bse118I | RCCGGY | 2 cut(s) | 3761, 3872 |
| Bse1I | ACTGG | 9 cut(s) | 306, 366, 543, 1395, 1510, 1561, 1648, 1671, 1779 |
| Bse21I | CCTNAGG | 1 cut(s) | 2133 |
| Bse3DI | GCAATG | 6 cut(s) | 1035, 1635, 1761, 2193, 2933, 3399 |
| Bse8I | GATNNNNATC | 1 cut(s) | 902 |
| BseJI | GATNNNNATC | 1 cut(s) | 902 |
| BseMI | GCAATG | 6 cut(s) | 1035, 1635, 1761, 2193, 2933, 3399 |
| BseNI | ACTGG | 9 cut(s) | 306, 366, 543, 1395, 1510, 1561, 1648, 1671, 1779 |
| BseRI | GAGGAG | 1 cut(s) | 3147 |
| BseSI | GKGCMC | 1 cut(s) | 1180 |
| BseYI | CCCAGC | 2 cut(s) | 2826, 3349 |
| BsgI | GTGCAG | 1 cut(s) | 131 |
| Bsh1236I | CGCG | 1 cut(s) | 737 |
| BshFI | GGCC | 9 cut(s) | 302, 568, 705, 970, 1020, 1051, 1778, 2555, 3400 |
| BshNI | GGYRCC | 3 cut(s) | 923, 1238, 1408 |
| BshTI | ACCGGT | 1 cut(s) | 3872 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1287, 1637, 3635, 3737, 3803 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3770 |
| BsiSI | CCGG | 4 cut(s) | 1495, 1775, 3762, 3873 |
| BslFI | GGGAC | 6 cut(s) | 838, 1210, 1476, 1803, 3070, 3263 |
| BsmAI | GTCTC | 7 cut(s) | 41, 441, 991, 1253, 1527, 1985, 2571 |
| BsmFI | GGGAC | 6 cut(s) | 838, 1210, 1476, 1803, 3070, 3263 |
| BsmI | GAATGC | 3 cut(s) | 124, 1378, 2884 |
| BsnI | GGCC | 9 cut(s) | 302, 568, 705, 970, 1020, 1051, 1778, 2555, 3400 |
| Bso31I | GGTCTC | 1 cut(s) | 991 |
| BsoBI | CYCGRG | 1 cut(s) | 3770 |
| Bsp119I | TTCGAA | 1 cut(s) | 1994 |
| Bsp1286I | GDGCHC | 8 cut(s) | 1180, 1287, 1637, 2033, 2577, 3635, 3737, 3803 |
| Bsp1407I | TGTACA | 1 cut(s) | 2902 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 3731, 3797 |
| Bsp19I | CCATGG | 3 cut(s) | 847, 2194, 3102 |
| BspANI | GGCC | 9 cut(s) | 302, 568, 705, 970, 1020, 1051, 1778, 2555, 3400 |
| BspFNI | CGCG | 1 cut(s) | 737 |
| BspHI | TCATGA | 1 cut(s) | 1386 |
| BspMAI | CTGCAG | 2 cut(s) | 46, 2410 |
| BspOI | GCTAGC | 1 cut(s) | 3690 |
| BspPI | GGATC | 8 cut(s) | 318, 331, 470, 859, 1078, 1386, 1777, 3337 |
| BspT104I | TTCGAA | 1 cut(s) | 1994 |
| BspT107I | GGYRCC | 3 cut(s) | 923, 1238, 1408 |
| BspTI | CTTAAG | 1 cut(s) | 751 |
| BspTNI | GGTCTC | 1 cut(s) | 991 |
| BsrDI | GCAATG | 6 cut(s) | 1035, 1635, 1761, 2193, 2933, 3399 |
| BsrFI | RCCGGY | 2 cut(s) | 3761, 3872 |
| BsrGI | TGTACA | 1 cut(s) | 2902 |
| BsrI | ACTGG | 9 cut(s) | 306, 366, 543, 1395, 1510, 1561, 1648, 1671, 1779 |
| BssAI | RCCGGY | 2 cut(s) | 3761, 3872 |
| BssNAI | GTATAC | 1 cut(s) | 548 |
| BssSI | CACGAG | 1 cut(s) | 2524 |
| BssT1I | CCWWGG | 6 cut(s) | 700, 847, 1242, 1423, 2194, 3102 |
| Bst1107I | GTATAC | 1 cut(s) | 548 |
| Bst2BI | CACGAG | 1 cut(s) | 2524 |
| Bst4CI | ACNGT | 9 cut(s) | 586, 1221, 1516, 1891, 2182, 2286, 2451, 2907, 3181 |
| Bst6I | CTCTTC | 2 cut(s) | 80, 182 |
| BstAFI | CTTAAG | 1 cut(s) | 751 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 2761, 3508, 3535, 3565 |
| BstAUI | TGTACA | 1 cut(s) | 2902 |
| BstBI | TTCGAA | 1 cut(s) | 1994 |
| BstC8I | GCNNGC | 7 cut(s) | 682, 1856, 2277, 2850, 3684, 3688, 3787 |
| BstDSI | CCRYGG | 3 cut(s) | 847, 2194, 3102 |
| BstFNI | CGCG | 1 cut(s) | 737 |
| BstH2I | RGCGCY | 1 cut(s) | 32 |
| BstHHI | GCGC | 2 cut(s) | 31, 737 |
| BstMAI | GTCTC | 7 cut(s) | 41, 441, 991, 1253, 1527, 1985, 2571 |
| BstNSI | RCATGY | 3 cut(s) | 1858, 2359, 3271 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1003 |
| BstSFI | CTRYAG | 7 cut(s) | 42, 1053, 1212, 1563, 2181, 2406, 3602 |
| BstSLI | GKGCMC | 1 cut(s) | 1180 |
| BstUI | CGCG | 1 cut(s) | 737 |
| BstX2I | RGATCY | 6 cut(s) | 323, 475, 755, 1391, 1769, 3329 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3109 |
| BstYI | RGATCY | 6 cut(s) | 323, 475, 755, 1391, 1769, 3329 |
| BstZ17I | GTATAC | 1 cut(s) | 548 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2133 |
| BsuI | GTATCC | 1 cut(s) | 1133 |
| BsuRI | GGCC | 9 cut(s) | 302, 568, 705, 970, 1020, 1051, 1778, 2555, 3400 |
| BtgI | CCRYGG | 3 cut(s) | 847, 2194, 3102 |
| BtgZI | GCGATG | 2 cut(s) | 730, 3814 |
| BtrI | CACGTC | 1 cut(s) | 2603 |
| BtsIMutI | CAGTG | 7 cut(s) | 359, 1178, 1294, 1488, 1678, 1786, 2294 |
| Cac8I | GCNNGC | 7 cut(s) | 682, 1856, 2277, 2850, 3684, 3688, 3787 |
| CaiI | CAGNNNCTG | 4 cut(s) | 50, 860, 1643, 3361 |
| CciI | TCATGA | 1 cut(s) | 1386 |
| CfoI | GCGC | 2 cut(s) | 31, 737 |
| Cfr10I | RCCGGY | 2 cut(s) | 3761, 3872 |
| Csp6I | GTAC | 6 cut(s) | 238, 924, 2178, 2191, 2303, 2903 |
| CspAI | ACCGGT | 1 cut(s) | 3872 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 508, 543 |
| CviQI | GTAC | 6 cut(s) | 238, 924, 2178, 2191, 2303, 2903 |
| DraI | TTTAAA | 2 cut(s) | 2011, 2088 |
| DriI | GACNNNNNGTC | 1 cut(s) | 863 |
| EaeI | YGGCCR | 1 cut(s) | 1776 |
| Eam1104I | CTCTTC | 2 cut(s) | 80, 182 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 863 |
| EarI | CTCTTC | 2 cut(s) | 80, 182 |
| EciI | GGCGGA | 2 cut(s) | 300, 335 |
| Ecl136II | GAGCTC | 5 cut(s) | 1285, 1635, 3633, 3735, 3801 |
| Eco130I | CCWWGG | 6 cut(s) | 700, 847, 1242, 1423, 2194, 3102 |
| Eco147I | AGGCCT | 1 cut(s) | 2555 |
| Eco24I | GRGCYC | 7 cut(s) | 1287, 1637, 2033, 2577, 3635, 3737, 3803 |
| Eco31I | GGTCTC | 1 cut(s) | 991 |
| Eco32I | GATATC | 1 cut(s) | 382 |
| Eco47I | GGWCC | 9 cut(s) | 343, 844, 857, 1005, 1568, 3057, 3277, 3407, 3847 |
| Eco47III | AGCGCT | 1 cut(s) | 30 |
| Eco53kI | GAGCTC | 5 cut(s) | 1285, 1635, 3633, 3735, 3801 |
| Eco57I | CTGAAG | 2 cut(s) | 45, 2618 |
| Eco81I | CCTNAGG | 1 cut(s) | 2133 |
| Eco88I | CYCGRG | 1 cut(s) | 3770 |
| EcoICRI | GAGCTC | 5 cut(s) | 1285, 1635, 3633, 3735, 3801 |
| EcoO109I | RGGNCCY | 7 cut(s) | 857, 1005, 1049, 1568, 3057, 3277, 3398 |
| EcoRI | GAATTC | 1 cut(s) | 3592 |
| EcoRV | GATATC | 1 cut(s) | 382 |
| EcoT14I | CCWWGG | 6 cut(s) | 700, 847, 1242, 1423, 2194, 3102 |
| EcoT22I | ATGCAT | 3 cut(s) | 2491, 3324, 3883 |
| EcoT38I | GRGCYC | 7 cut(s) | 1287, 1637, 2033, 2577, 3635, 3737, 3803 |
| ErhI | CCWWGG | 6 cut(s) | 700, 847, 1242, 1423, 2194, 3102 |
| FaqI | GGGAC | 6 cut(s) | 838, 1210, 1476, 1803, 3070, 3263 |
| FauI | CCCGC | 2 cut(s) | 1350, 2360 |
| FauNDI | CATATG | 1 cut(s) | 154 |
| FbaI | TGATCA | 2 cut(s) | 717, 2151 |
| FblI | GTMKAC | 1 cut(s) | 547 |
| FriOI | GRGCYC | 7 cut(s) | 1287, 1637, 2033, 2577, 3635, 3737, 3803 |
| FspBI | CTAG | 4 cut(s) | 473, 1938, 2222, 3687 |
| GlaI | GCGC | 2 cut(s) | 30, 736 |
| GsaI | CCCAGC | 2 cut(s) | 2830, 3353 |
| GsuI | CTGGAG | 2 cut(s) | 228, 2816 |
| HaeII | RGCGCY | 1 cut(s) | 32 |
| HaeIII | GGCC | 9 cut(s) | 302, 568, 705, 970, 1020, 1051, 1778, 2555, 3400 |
| HapII | CCGG | 4 cut(s) | 1495, 1775, 3762, 3873 |
| HhaI | GCGC | 2 cut(s) | 31, 737 |
| Hin6I | GCGC | 2 cut(s) | 29, 735 |
| HinP1I | GCGC | 2 cut(s) | 29, 735 |
| HindIII | AAGCTT | 2 cut(s) | 450, 524 |
| HpaII | CCGG | 4 cut(s) | 1495, 1775, 3762, 3873 |
| HphI | GGTGA | 5 cut(s) | 428, 969, 2225, 3588, 3640 |
| Hpy166II | GTNNAC | 6 cut(s) | 548, 890, 2294, 2606, 3410, 3725 |
| Hpy8I | GTNNAC | 6 cut(s) | 548, 890, 2294, 2606, 3410, 3725 |
| HpyAV | CCTTC | 8 cut(s) | 70, 370, 1166, 1268, 1313, 1609, 1845, 3860 |
| HpyCH4III | ACNGT | 9 cut(s) | 586, 1221, 1516, 1891, 2182, 2286, 2451, 2907, 3181 |
| HpyCH4IV | ACGT | 3 cut(s) | 65, 2246, 2602 |
| HpySE526I | ACGT | 3 cut(s) | 65, 2246, 2602 |
| HspAI | GCGC | 2 cut(s) | 29, 735 |
| KflI | GGGWCCC | 2 cut(s) | 3057, 3277 |
| KpnI | GGTACC | 1 cut(s) | 927 |
| Ksp22I | TGATCA | 2 cut(s) | 717, 2151 |
| LmnI | GCTCC | 9 cut(s) | 1586, 2098, 2111, 2835, 3038, 3134, 3308, 3638, 3821 |
| MaeI | CTAG | 4 cut(s) | 473, 1938, 2222, 3687 |
| MaeII | ACGT | 3 cut(s) | 65, 2246, 2602 |
| MaeIII | GTNAC | 7 cut(s) | 357, 580, 586, 975, 1639, 1885, 2043 |
| MfeI | CAATTG | 6 cut(s) | 93, 186, 2873, 2883, 3539, 3563 |
| MflI | RGATCY | 6 cut(s) | 323, 475, 755, 1391, 1769, 3329 |
| MhlI | GDGCHC | 8 cut(s) | 1180, 1287, 1637, 2033, 2577, 3635, 3737, 3803 |
| MlyI | GAGTC | 6 cut(s) | 26, 443, 820, 3193, 3352, 3730 |
| MmeI | TCCRAC | 5 cut(s) | 471, 536, 1747, 1807, 2362 |
| Mph1103I | ATGCAT | 3 cut(s) | 2491, 3324, 3883 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1834 |
| MseI | TTAA | 8 cut(s) | 68, 752, 1296, 1805, 2010, 2087, 2475, 2496 |
| MslI | CAYNNNNRTG | 6 cut(s) | 129, 153, 256, 963, 2528, 3107 |
| MspA1I | CMGCKG | 5 cut(s) | 1544, 2614, 2855, 3730, 3796 |
| MspCI | CTTAAG | 1 cut(s) | 751 |
| MspI | CCGG | 4 cut(s) | 1495, 1775, 3762, 3873 |
| MunI | CAATTG | 6 cut(s) | 93, 186, 2873, 2883, 3539, 3563 |
| Mva1269I | GAATGC | 3 cut(s) | 124, 1378, 2884 |
| MvnI | CGCG | 1 cut(s) | 737 |
| NciI | CCSGG | 1 cut(s) | 1495 |
| NcoI | CCATGG | 3 cut(s) | 847, 2194, 3102 |
| NdeI | CATATG | 1 cut(s) | 154 |
| NheI | GCTAGC | 1 cut(s) | 3686 |
| NmeAIII | GCCGAG | 1 cut(s) | 161 |
| NmuCI | GTSAC | 4 cut(s) | 357, 975, 1885, 2043 |
| NsiI | ATGCAT | 3 cut(s) | 2491, 3324, 3883 |
| NspI | RCATGY | 3 cut(s) | 1858, 2359, 3271 |
| NspV | TTCGAA | 1 cut(s) | 1994 |
| OliI | CACNNNNGTG | 1 cut(s) | 256 |
| PaeI | GCATGC | 1 cut(s) | 1858 |
| PagI | TCATGA | 1 cut(s) | 1386 |
| PasI | CCCWGGG | 1 cut(s) | 3061 |
| PceI | AGGCCT | 1 cut(s) | 2555 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 274 |
| PctI | GAATGC | 3 cut(s) | 124, 1378, 2884 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1834 |
| PfeI | GAWTC | 9 cut(s) | 191, 508, 665, 672, 1090, 1183, 1682, 2018, 2618 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2174 |
| PfoI | TCCNGGA | 2 cut(s) | 943, 3325 |
| PinAI | ACCGGT | 1 cut(s) | 3872 |
| PleI | GAGTC | 6 cut(s) | 25, 442, 820, 3192, 3352, 3729 |
| PpsI | GAGTC | 6 cut(s) | 25, 442, 820, 3192, 3352, 3729 |
| PpuMI | RGGWCCY | 5 cut(s) | 857, 1005, 1568, 3057, 3277 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1003 |
| PshBI | ATTAAT | 1 cut(s) | 2475 |
| Psp124BI | GAGCTC | 5 cut(s) | 1287, 1637, 3635, 3737, 3803 |
| Psp5II | RGGWCCY | 5 cut(s) | 857, 1005, 1568, 3057, 3277 |
| PspFI | CCCAGC | 2 cut(s) | 2826, 3349 |
| PspPPI | RGGWCCY | 5 cut(s) | 857, 1005, 1568, 3057, 3277 |
| PstI | CTGCAG | 2 cut(s) | 46, 2410 |
| PstNI | CAGNNNCTG | 4 cut(s) | 50, 860, 1643, 3361 |
| PsuI | RGATCY | 6 cut(s) | 323, 475, 755, 1391, 1769, 3329 |
| PvuII | CAGCTG | 4 cut(s) | 2614, 2855, 3730, 3796 |
| RsaI | GTAC | 6 cut(s) | 239, 925, 2179, 2192, 2304, 2904 |
| RsaNI | GTAC | 6 cut(s) | 238, 924, 2178, 2191, 2303, 2903 |
| RseI | CAYNNNNRTG | 6 cut(s) | 129, 153, 256, 963, 2528, 3107 |
| SacI | GAGCTC | 5 cut(s) | 1287, 1637, 3635, 3737, 3803 |
| SaqAI | TTAA | 8 cut(s) | 68, 752, 1296, 1805, 2010, 2087, 2475, 2496 |
| SchI | GAGTC | 6 cut(s) | 26, 443, 820, 3193, 3352, 3730 |
| SduI | GDGCHC | 8 cut(s) | 1180, 1287, 1637, 2033, 2577, 3635, 3737, 3803 |
| SfcI | CTRYAG | 7 cut(s) | 42, 1053, 1212, 1563, 2181, 2406, 3602 |
| SfuI | TTCGAA | 1 cut(s) | 1994 |
| SinI | GGWCC | 9 cut(s) | 343, 844, 857, 1005, 1568, 3057, 3277, 3407, 3847 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 129, 153, 256, 963, 2528, 3107 |
| SmlI | CTYRAG | 2 cut(s) | 751, 2568 |
| SmoI | CTYRAG | 2 cut(s) | 751, 2568 |
| SphI | GCATGC | 1 cut(s) | 1858 |
| SseBI | AGGCCT | 1 cut(s) | 2555 |
| SspI | AATATT | 2 cut(s) | 1435, 3442 |
| SspMI | CTAG | 4 cut(s) | 473, 1938, 2222, 3687 |
| SstI | GAGCTC | 5 cut(s) | 1287, 1637, 3635, 3737, 3803 |
| StuI | AGGCCT | 1 cut(s) | 2555 |
| StyI | CCWWGG | 6 cut(s) | 700, 847, 1242, 1423, 2194, 3102 |
| TaaI | ACNGT | 9 cut(s) | 586, 1221, 1516, 1891, 2182, 2286, 2451, 2907, 3181 |
| TaiI | ACGT | 3 cut(s) | 68, 2249, 2605 |
| TaqI | TCGA | 4 cut(s) | 268, 1730, 1994, 2039 |
| TaqII | GACCGA | 1 cut(s) | 1015 |
| TatI | WGTACW | 2 cut(s) | 237, 2902 |
| TauI | GCSGC | 2 cut(s) | 305, 3013 |
| TfiI | GAWTC | 9 cut(s) | 191, 508, 665, 672, 1090, 1183, 1682, 2018, 2618 |
| Tru1I | TTAA | 8 cut(s) | 68, 752, 1296, 1805, 2010, 2087, 2475, 2496 |
| Tru9I | TTAA | 8 cut(s) | 68, 752, 1296, 1805, 2010, 2087, 2475, 2496 |
| TscAI | CASTG | 7 cut(s) | 366, 1185, 1294, 1488, 1678, 1786, 2301 |
| TseFI | GTSAC | 4 cut(s) | 357, 975, 1885, 2043 |
| Tsp45I | GTSAC | 4 cut(s) | 357, 975, 1885, 2043 |
| TspGWI | ACGGA | 5 cut(s) | 336, 565, 1738, 1923, 3808 |
| TspRI | CASTG | 7 cut(s) | 366, 1185, 1294, 1488, 1678, 1786, 2301 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2174 |
| Vha464I | CTTAAG | 1 cut(s) | 751 |
| VpaK11BI | GGWCC | 9 cut(s) | 343, 844, 857, 1005, 1568, 3057, 3277, 3407, 3847 |
| VspI | ATTAAT | 1 cut(s) | 2475 |
| XbaI | TCTAGA | 1 cut(s) | 472 |
| XceI | RCATGY | 3 cut(s) | 1858, 2359, 3271 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 487, 2260 |
| XmiI | GTMKAC | 1 cut(s) | 547 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1834 |
| XspI | CTAG | 4 cut(s) | 473, 1938, 2222, 3687 |
| Zsp2I | ATGCAT | 3 cut(s) | 2491, 3324, 3883 |