chromatin binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72390 AT1G72390 |
| fragaria_vesca | FvH4_6g35180 FvH4_6g35180 FvH4_6g35180 FvH4_6g35180 |
| malus_domestica | MD09G1178000.v1.1 MD17G1148700.v1.1 |
| prunus_persica | Prupe.3G037300_v2.0.a1 |
| pyrus_communis | pycom09g09640 pycom17g14200 pycom17g14240 |
| rosa_chinensis | RchiOBHm_Chr2g0146441 |
| rosa_laevigata | RLG00000020201 |
| rosa_multiflora | Rmu_sc0001986.1_g000006 Rmu_sc0014617.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00100090 |
| rosa_rugosa | Rorug02G0394400 Rorug02G0394400 Rorug02G0394500 |
| rosa_samantha | Rh2AG451200 Rh2BG463700 Rh2CG438000 Rh2DG472700 |
| rosa_wichuraiana | Rw2G036830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1372, 3814 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2830 |
| Acc36I | ACCTGC | 2 cut(s) | 1372, 3814 |
| Acc65I | GGTACC | 1 cut(s) | 32 |
| AccB1I | GGYRCC | 3 cut(s) | 32, 1396, 1457 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2408, 2714 |
| AccBSI | CCGCTC | 1 cut(s) | 1983 |
| AccIII | TCCGGA | 1 cut(s) | 756 |
| AcoI | YGGCCR | 2 cut(s) | 403, 1332 |
| AcuI | CTGAAG | 5 cut(s) | 240, 546, 2387, 2855, 3146 |
| AfaI | GTAC | 6 cut(s) | 34, 328, 1146, 2413, 2426, 3677 |
| AflIII | ACRYGT | 2 cut(s) | 90, 951 |
| AgeI | ACCGGT | 1 cut(s) | 29 |
| AhlI | ACTAGT | 1 cut(s) | 3617 |
| AjiI | CACGTC | 1 cut(s) | 91 |
| AjnI | CCWGG | 8 cut(s) | 35, 128, 412, 508, 1631, 2599, 2776, 3408 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2164, 2196 |
| AleI | CACNNNNGTG | 1 cut(s) | 463 |
| Alw21I | GWGCWC | 3 cut(s) | 1506, 3947, 4013 |
| Alw26I | GTCTC | 9 cut(s) | 25, 62, 169, 1472, 1536, 1932, 2808, 2838, 3590 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 708, 1070, 1814, 1865 |
| Ama87I | CYCGRG | 3 cut(s) | 117, 155, 191 |
| Aor13HI | TCCGGA | 1 cut(s) | 756 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1934, 1966, 2293, 2325 |
| AseI | ATTAAT | 1 cut(s) | 2712 |
| AsiGI | ACCGGT | 1 cut(s) | 29 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 225, 269 |
| Asp718I | GGTACC | 1 cut(s) | 32 |
| AsuC2I | CCSGG | 2 cut(s) | 192, 193 |
| AsuHPI | GGTGA | 7 cut(s) | 173, 635, 1083, 1215, 1571, 3148, 3786 |
| AsuNHI | GCTAGC | 1 cut(s) | 3893 |
| AvaI | CYCGRG | 3 cut(s) | 117, 155, 191 |
| AvaII | GGWCC | 6 cut(s) | 958, 1054, 1787, 3523, 3644, 4057 |
| AxyI | CCTNAGG | 1 cut(s) | 2787 |
| BaeGI | GKGCMC | 2 cut(s) | 192, 1399 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1128, 1161 |
| BalI | TGGCCA | 1 cut(s) | 1334 |
| BamHI | GGATCC | 4 cut(s) | 530, 682, 2242, 3554 |
| BanI | GGYRCC | 3 cut(s) | 32, 1396, 1457 |
| BanII | GRGCYC | 6 cut(s) | 944, 1506, 2814, 3833, 3947, 4013 |
| BbsI | GAAGAC | 2 cut(s) | 207, 218 |
| Bbv12I | GWGCWC | 3 cut(s) | 1506, 3947, 4013 |
| BbvCI | CCTCAGC | 4 cut(s) | 1377, 1972, 2463, 3819 |
| BceAI | ACGGC | 2 cut(s) | 1589, 1931 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2312, 2346 |
| BciT130I | CCWGG | 8 cut(s) | 37, 130, 414, 510, 1633, 2601, 2778, 3410 |
| BciVI | GTATCC | 1 cut(s) | 764 |
| BclI | TGATCA | 2 cut(s) | 2068, 2385 |
| BcnI | CCSGG | 2 cut(s) | 192, 193 |
| BcoDI | GTCTC | 9 cut(s) | 25, 62, 169, 1472, 1536, 1932, 2808, 2838, 3590 |
| BcuI | ACTAGT | 1 cut(s) | 3617 |
| BfaI | CTAG | 8 cut(s) | 425, 801, 1014, 1614, 2304, 2379, 3618, 3894 |
| BfmI | CTRYAG | 7 cut(s) | 859, 1431, 1782, 1857, 2415, 2876, 3800 |
| BfuAI | ACCTGC | 2 cut(s) | 1372, 3814 |
| BfuI | GTATCC | 1 cut(s) | 764 |
| BglII | AGATCT | 2 cut(s) | 1610, 2255 |
| BlpI | GCTNAGC | 2 cut(s) | 2703, 4007 |
| Bme18I | GGWCC | 6 cut(s) | 958, 1054, 1787, 3523, 3644, 4057 |
| BmeT110I | CYCGRG | 3 cut(s) | 117, 155, 191 |
| BmgBI | CACGTC | 1 cut(s) | 91 |
| BmrI | ACTGGG | 1 cut(s) | 2829 |
| BmtI | GCTAGC | 1 cut(s) | 3897 |
| BmuI | ACTGGG | 1 cut(s) | 2829 |
| BpiI | GAAGAC | 2 cut(s) | 207, 218 |
| BpmI | CTGGAG | 5 cut(s) | 222, 435, 1876, 2760, 3035 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1377, 1972, 2463, 3819, 3946 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2703, 4007 |
| BpuEI | CTTGAG | 2 cut(s) | 1914, 2790 |
| BpuMI | CCSGG | 2 cut(s) | 192, 193 |
| BsaI | GGTCTC | 3 cut(s) | 25, 62, 3590 |
| BsaWI | WCCGGW | 2 cut(s) | 29, 756 |
| Bse118I | RCCGGY | 2 cut(s) | 29, 405 |
| Bse1I | ACTGG | 9 cut(s) | 719, 750, 1094, 1226, 1304, 1893, 1924, 2001, 2824 |
| Bse21I | CCTNAGG | 1 cut(s) | 2787 |
| Bse3DI | GCAATG | 3 cut(s) | 1857, 1983, 2427 |
| BseAI | TCCGGA | 1 cut(s) | 756 |
| BseBI | CCWGG | 8 cut(s) | 37, 130, 414, 510, 1633, 2601, 2778, 3410 |
| BseMI | GCAATG | 3 cut(s) | 1857, 1983, 2427 |
| BseNI | ACTGG | 9 cut(s) | 719, 750, 1094, 1226, 1304, 1893, 1924, 2001, 2824 |
| BseRI | GAGGAG | 1 cut(s) | 45 |
| BseSI | GKGCMC | 2 cut(s) | 192, 1399 |
| BseYI | CCCAGC | 4 cut(s) | 1412, 3045, 3435, 3542 |
| BshNI | GGYRCC | 3 cut(s) | 32, 1396, 1457 |
| BshTI | ACCGGT | 1 cut(s) | 29 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1506, 3947, 4013 |
| BsiHKCI | CYCGRG | 3 cut(s) | 117, 155, 191 |
| BsiSI | CCGG | 6 cut(s) | 30, 192, 406, 757, 995, 2738 |
| BslFI | GGGAC | 6 cut(s) | 30, 1429, 1695, 2836, 3252, 3509 |
| BsmAI | GTCTC | 9 cut(s) | 25, 62, 169, 1472, 1536, 1932, 2808, 2838, 3590 |
| BsmFI | GGGAC | 6 cut(s) | 30, 1429, 1695, 2836, 3252, 3509 |
| BsmI | GAATGC | 5 cut(s) | 156, 319, 1248, 1362, 3097 |
| Bso31I | GGTCTC | 3 cut(s) | 25, 62, 3590 |
| BsoBI | CYCGRG | 3 cut(s) | 117, 155, 191 |
| Bsp1286I | GDGCHC | 8 cut(s) | 192, 944, 1399, 1506, 2814, 3833, 3947, 4013 |
| Bsp13I | TCCGGA | 1 cut(s) | 756 |
| Bsp1407I | TGTACA | 1 cut(s) | 3675 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2703, 4007 |
| Bsp19I | CCATGG | 3 cut(s) | 1057, 1282, 3958 |
| BspEI | TCCGGA | 1 cut(s) | 756 |
| BspHI | TCATGA | 1 cut(s) | 1605 |
| BspMAI | CTGCAG | 2 cut(s) | 1861, 2880 |
| BspMI | ACCTGC | 2 cut(s) | 1372, 3814 |
| BspOI | GCTAGC | 1 cut(s) | 3897 |
| BspQI | GCTCTTC | 1 cut(s) | 1461 |
| BspT107I | GGYRCC | 3 cut(s) | 32, 1396, 1457 |
| BspTNI | GGTCTC | 3 cut(s) | 25, 62, 3590 |
| BsrBI | CCGCTC | 1 cut(s) | 1983 |
| BsrDI | GCAATG | 3 cut(s) | 1857, 1983, 2427 |
| BsrFI | RCCGGY | 2 cut(s) | 29, 405 |
| BsrGI | TGTACA | 1 cut(s) | 3675 |
| BsrI | ACTGG | 9 cut(s) | 719, 750, 1094, 1226, 1304, 1893, 1924, 2001, 2824 |
| BssAI | RCCGGY | 2 cut(s) | 29, 405 |
| BssT1I | CCWWGG | 5 cut(s) | 1057, 1282, 1461, 3298, 3958 |
| Bst2UI | CCWGG | 8 cut(s) | 37, 130, 414, 510, 1633, 2601, 2778, 3410 |
| Bst4CI | ACNGT | 7 cut(s) | 860, 1072, 2107, 2416, 2520, 3705, 3720 |
| Bst6I | CTCTTC | 4 cut(s) | 275, 1155, 1461, 2530 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1814, 1817, 1856, 1865, 3766 |
| BstAUI | TGTACA | 1 cut(s) | 3675 |
| BstC8I | GCNNGC | 8 cut(s) | 2035, 2078, 2511, 3069, 3875, 3891, 3895, 3997 |
| BstDSI | CCRYGG | 3 cut(s) | 1057, 1282, 3958 |
| BstEII | GGTNACC | 1 cut(s) | 3974 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 525 |
| BstMAI | GTCTC | 9 cut(s) | 25, 62, 169, 1472, 1536, 1932, 2808, 2838, 3590 |
| BstNI | CCWGG | 8 cut(s) | 37, 130, 414, 510, 1633, 2601, 2778, 3410 |
| BstNSI | RCATGY | 3 cut(s) | 955, 2080, 3118 |
| BstPI | GGTNACC | 1 cut(s) | 3974 |
| BstSFI | CTRYAG | 7 cut(s) | 859, 1431, 1782, 1857, 2415, 2876, 3800 |
| BstSLI | GKGCMC | 2 cut(s) | 192, 1399 |
| BstV2I | GAAGAC | 2 cut(s) | 207, 218 |
| BstX2I | RGATCY | 7 cut(s) | 530, 682, 1610, 1991, 2242, 2255, 3554 |
| BstYI | RGATCY | 7 cut(s) | 530, 682, 1610, 1991, 2242, 2255, 3554 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2787 |
| BsuI | GTATCC | 1 cut(s) | 764 |
| BtgI | CCRYGG | 3 cut(s) | 1057, 1282, 3958 |
| BtrI | CACGTC | 1 cut(s) | 91 |
| BtsI | GCAGTG | 1 cut(s) | 998 |
| BtsIMutI | CAGTG | 6 cut(s) | 593, 998, 1513, 1900, 2008, 2528 |
| BveI | ACCTGC | 2 cut(s) | 1372, 3814 |
| Cac8I | GCNNGC | 8 cut(s) | 2035, 2078, 2511, 3069, 3875, 3891, 3895, 3997 |
| CaiI | CAGNNNCTG | 4 cut(s) | 708, 1070, 1814, 1865 |
| CciI | TCATGA | 1 cut(s) | 1605 |
| Cfr10I | RCCGGY | 2 cut(s) | 29, 405 |
| Cfr9I | CCCGGG | 1 cut(s) | 191 |
| CsiI | ACCWGGT | 1 cut(s) | 35 |
| Csp6I | GTAC | 6 cut(s) | 33, 327, 1145, 2412, 2425, 3676 |
| CspAI | ACCGGT | 1 cut(s) | 29 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3639, 3674 |
| CviQI | GTAC | 6 cut(s) | 33, 327, 1145, 2412, 2425, 3676 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2830 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2830 |
| EaeI | YGGCCR | 2 cut(s) | 403, 1332 |
| Eam1104I | CTCTTC | 4 cut(s) | 275, 1155, 1461, 2530 |
| EarI | CTCTTC | 4 cut(s) | 275, 1155, 1461, 2530 |
| EciI | GGCGGA | 2 cut(s) | 507, 2516 |
| Ecl136II | GAGCTC | 3 cut(s) | 1504, 3945, 4011 |
| Eco130I | CCWWGG | 5 cut(s) | 1057, 1282, 1461, 3298, 3958 |
| Eco147I | AGGCCT | 2 cut(s) | 2792, 3297 |
| Eco24I | GRGCYC | 6 cut(s) | 944, 1506, 2814, 3833, 3947, 4013 |
| Eco31I | GGTCTC | 3 cut(s) | 25, 62, 3590 |
| Eco32I | GATATC | 1 cut(s) | 589 |
| Eco47I | GGWCC | 6 cut(s) | 958, 1054, 1787, 3523, 3644, 4057 |
| Eco53kI | GAGCTC | 3 cut(s) | 1504, 3945, 4011 |
| Eco57I | CTGAAG | 5 cut(s) | 240, 546, 2387, 2855, 3146 |
| Eco81I | CCTNAGG | 1 cut(s) | 2787 |
| Eco88I | CYCGRG | 3 cut(s) | 117, 155, 191 |
| Eco91I | GGTNACC | 1 cut(s) | 3974 |
| EcoICRI | GAGCTC | 3 cut(s) | 1504, 3945, 4011 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 525 |
| EcoO109I | RGGNCCY | 4 cut(s) | 506, 1218, 1787, 3523 |
| EcoO65I | GGTNACC | 1 cut(s) | 3974 |
| EcoRI | GAATTC | 1 cut(s) | 1341 |
| EcoRII | CCWGG | 8 cut(s) | 35, 128, 412, 508, 1631, 2599, 2776, 3408 |
| EcoRV | GATATC | 1 cut(s) | 589 |
| EcoT14I | CCWWGG | 5 cut(s) | 1057, 1282, 1461, 3298, 3958 |
| EcoT22I | ATGCAT | 3 cut(s) | 1084, 3570, 4099 |
| EcoT38I | GRGCYC | 6 cut(s) | 944, 1506, 2814, 3833, 3947, 4013 |
| ErhI | CCWWGG | 5 cut(s) | 1057, 1282, 1461, 3298, 3958 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 315, 347, 519, 551, 3397, 3429 |
| FaqI | GGGAC | 6 cut(s) | 30, 1429, 1695, 2836, 3252, 3509 |
| FauI | CCCGC | 1 cut(s) | 3655 |
| FauNDI | CATATG | 2 cut(s) | 1023, 1120 |
| FbaI | TGATCA | 2 cut(s) | 2068, 2385 |
| FriOI | GRGCYC | 6 cut(s) | 944, 1506, 2814, 3833, 3947, 4013 |
| FspBI | CTAG | 8 cut(s) | 425, 801, 1014, 1614, 2304, 2379, 3618, 3894 |
| GsaI | CCCAGC | 4 cut(s) | 1416, 3049, 3439, 3546 |
| GsuI | CTGGAG | 5 cut(s) | 222, 435, 1876, 2760, 3035 |
| HapII | CCGG | 6 cut(s) | 30, 192, 406, 757, 995, 2738 |
| HincII | GTYRAC | 1 cut(s) | 82 |
| HindII | GTYRAC | 1 cut(s) | 82 |
| HindIII | AAGCTT | 1 cut(s) | 657 |
| HpaII | CCGG | 6 cut(s) | 30, 192, 406, 757, 995, 2738 |
| HphI | GGTGA | 7 cut(s) | 173, 635, 1083, 1215, 1571, 3148, 3786 |
| Hpy166II | GTNNAC | 6 cut(s) | 82, 329, 2843, 3647, 3932, 4072 |
| Hpy8I | GTNNAC | 6 cut(s) | 82, 329, 2843, 3647, 3932, 4072 |
| HpyCH4III | ACNGT | 7 cut(s) | 860, 1072, 2107, 2416, 2520, 3705, 3720 |
| HpyCH4IV | ACGT | 3 cut(s) | 90, 2480, 2839 |
| HpySE526I | ACGT | 3 cut(s) | 90, 2480, 2839 |
| KflI | GGGWCCC | 1 cut(s) | 3523 |
| Kpn2I | TCCGGA | 1 cut(s) | 756 |
| KpnI | GGTACC | 1 cut(s) | 36 |
| Ksp22I | TGATCA | 2 cut(s) | 2068, 2385 |
| LguI | GCTCTTC | 1 cut(s) | 1461 |
| LmnI | GCTCC | 8 cut(s) | 119, 694, 857, 1799, 3054, 3264, 3320, 3836 |
| MabI | ACCWGGT | 1 cut(s) | 35 |
| MaeI | CTAG | 8 cut(s) | 425, 801, 1014, 1614, 2304, 2379, 3618, 3894 |
| MaeII | ACGT | 3 cut(s) | 90, 2480, 2839 |
| MaeIII | GTNAC | 8 cut(s) | 787, 1185, 2107, 2268, 2856, 3705, 3720, 3974 |
| MbiI | CCGCTC | 1 cut(s) | 1983 |
| MfeI | CAATTG | 5 cut(s) | 393, 3096, 3309, 3746, 3764 |
| MflI | RGATCY | 7 cut(s) | 530, 682, 1610, 1991, 2242, 2255, 3554 |
| MhlI | GDGCHC | 8 cut(s) | 192, 944, 1399, 1506, 2814, 3833, 3947, 4013 |
| MlsI | TGGCCA | 1 cut(s) | 1334 |
| MluNI | TGGCCA | 1 cut(s) | 1334 |
| MlyI | GAGTC | 5 cut(s) | 1411, 1898, 2864, 3634, 3937 |
| MmeI | TCCRAC | 6 cut(s) | 678, 879, 1012, 1969, 2029, 2593 |
| Mox20I | TGGCCA | 1 cut(s) | 1334 |
| Mph1103I | ATGCAT | 3 cut(s) | 1084, 3570, 4099 |
| MroI | TCCGGA | 1 cut(s) | 756 |
| MroXI | GAANNNNTTC | 2 cut(s) | 225, 269 |
| MscI | TGGCCA | 1 cut(s) | 1334 |
| MseI | TTAA | 9 cut(s) | 15, 923, 1203, 1515, 2712, 2732, 3404, 3431, 3458 |
| MslI | CAYNNNNRTG | 6 cut(s) | 183, 360, 463, 912, 1173, 2765 |
| Msp20I | TGGCCA | 1 cut(s) | 1334 |
| MspA1I | CMGCKG | 2 cut(s) | 2875, 4006 |
| MspI | CCGG | 6 cut(s) | 30, 192, 406, 757, 995, 2738 |
| MunI | CAATTG | 5 cut(s) | 393, 3096, 3309, 3746, 3764 |
| Mva1269I | GAATGC | 5 cut(s) | 156, 319, 1248, 1362, 3097 |
| MvaI | CCWGG | 8 cut(s) | 37, 130, 414, 510, 1633, 2601, 2778, 3410 |
| NciI | CCSGG | 2 cut(s) | 192, 193 |
| NcoI | CCATGG | 3 cut(s) | 1057, 1282, 3958 |
| NdeI | CATATG | 2 cut(s) | 1023, 1120 |
| NheI | GCTAGC | 1 cut(s) | 3893 |
| NmuCI | GTSAC | 3 cut(s) | 1185, 2268, 2856 |
| NsiI | ATGCAT | 3 cut(s) | 1084, 3570, 4099 |
| NspI | RCATGY | 3 cut(s) | 955, 2080, 3118 |
| OliI | CACNNNNGTG | 1 cut(s) | 463 |
| PaeI | GCATGC | 1 cut(s) | 2080 |
| PaeR7I | CTCGAG | 1 cut(s) | 155 |
| PagI | TCATGA | 1 cut(s) | 1605 |
| PaqCI | CACCTGC | 2 cut(s) | 1372, 3814 |
| PceI | AGGCCT | 2 cut(s) | 2792, 3297 |
| PciI | ACATGT | 1 cut(s) | 951 |
| PciSI | GCTCTTC | 1 cut(s) | 1461 |
| PctI | GAATGC | 5 cut(s) | 156, 319, 1248, 1362, 3097 |
| PdmI | GAANNNNTTC | 2 cut(s) | 225, 269 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2408, 2714 |
| PfoI | TCCNGGA | 2 cut(s) | 1631, 2776 |
| PinAI | ACCGGT | 1 cut(s) | 29 |
| PleI | GAGTC | 5 cut(s) | 1410, 1898, 2863, 3633, 3936 |
| PpsI | GAGTC | 5 cut(s) | 1410, 1898, 2863, 3633, 3936 |
| PpuMI | RGGWCCY | 2 cut(s) | 1787, 3523 |
| PscI | ACATGT | 1 cut(s) | 951 |
| PshBI | ATTAAT | 1 cut(s) | 2712 |
| Psp124BI | GAGCTC | 3 cut(s) | 1506, 3947, 4013 |
| Psp5II | RGGWCCY | 2 cut(s) | 1787, 3523 |
| Psp6I | CCWGG | 8 cut(s) | 35, 128, 412, 508, 1631, 2599, 2776, 3408 |
| PspEI | GGTNACC | 1 cut(s) | 3974 |
| PspFI | CCCAGC | 4 cut(s) | 1412, 3045, 3435, 3542 |
| PspGI | CCWGG | 8 cut(s) | 35, 128, 412, 508, 1631, 2599, 2776, 3408 |
| PspPPI | RGGWCCY | 2 cut(s) | 1787, 3523 |
| PspXI | VCTCGAGB | 1 cut(s) | 155 |
| PstI | CTGCAG | 2 cut(s) | 1861, 2880 |
| PstNI | CAGNNNCTG | 4 cut(s) | 708, 1070, 1814, 1865 |
| PsuI | RGATCY | 7 cut(s) | 530, 682, 1610, 1991, 2242, 2255, 3554 |
| PvuII | CAGCTG | 2 cut(s) | 2875, 4006 |
| RsaI | GTAC | 6 cut(s) | 34, 328, 1146, 2413, 2426, 3677 |
| RsaNI | GTAC | 6 cut(s) | 33, 327, 1145, 2412, 2425, 3676 |
| RseI | CAYNNNNRTG | 6 cut(s) | 183, 360, 463, 912, 1173, 2765 |
| SacI | GAGCTC | 3 cut(s) | 1506, 3947, 4013 |
| SapI | GCTCTTC | 1 cut(s) | 1461 |
| SaqAI | TTAA | 9 cut(s) | 15, 923, 1203, 1515, 2712, 2732, 3404, 3431, 3458 |
| SchI | GAGTC | 5 cut(s) | 1411, 1898, 2864, 3634, 3937 |
| SduI | GDGCHC | 8 cut(s) | 192, 944, 1399, 1506, 2814, 3833, 3947, 4013 |
| SexAI | ACCWGGT | 1 cut(s) | 35 |
| SfcI | CTRYAG | 7 cut(s) | 859, 1431, 1782, 1857, 2415, 2876, 3800 |
| Sfr274I | CTCGAG | 1 cut(s) | 155 |
| SinI | GGWCC | 6 cut(s) | 958, 1054, 1787, 3523, 3644, 4057 |
| SlaI | CTCGAG | 1 cut(s) | 155 |
| SmaI | CCCGGG | 1 cut(s) | 193 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 183, 360, 463, 912, 1173, 2765 |
| SmlI | CTYRAG | 3 cut(s) | 155, 1929, 2805 |
| SmoI | CTYRAG | 3 cut(s) | 155, 1929, 2805 |
| SpeI | ACTAGT | 1 cut(s) | 3617 |
| SphI | GCATGC | 1 cut(s) | 2080 |
| SseBI | AGGCCT | 2 cut(s) | 2792, 3297 |
| SspI | AATATT | 3 cut(s) | 651, 1654, 3421 |
| SspMI | CTAG | 8 cut(s) | 425, 801, 1014, 1614, 2304, 2379, 3618, 3894 |
| SstI | GAGCTC | 3 cut(s) | 1506, 3947, 4013 |
| StuI | AGGCCT | 2 cut(s) | 2792, 3297 |
| StyI | CCWWGG | 5 cut(s) | 1057, 1282, 1461, 3298, 3958 |
| TaaI | ACNGT | 7 cut(s) | 860, 1072, 2107, 2416, 2520, 3705, 3720 |
| TaiI | ACGT | 3 cut(s) | 93, 2483, 2842 |
| TaqI | TCGA | 4 cut(s) | 148, 156, 735, 2264 |
| TatI | WGTACW | 2 cut(s) | 2424, 3675 |
| TauI | GCSGC | 4 cut(s) | 2586, 3001, 3211, 3513 |
| Tru1I | TTAA | 9 cut(s) | 15, 923, 1203, 1515, 2712, 2732, 3404, 3431, 3458 |
| Tru9I | TTAA | 9 cut(s) | 15, 923, 1203, 1515, 2712, 2732, 3404, 3431, 3458 |
| TscAI | CASTG | 6 cut(s) | 600, 1005, 1513, 1900, 2008, 2535 |
| TseFI | GTSAC | 3 cut(s) | 1185, 2268, 2856 |
| Tsp45I | GTSAC | 3 cut(s) | 1185, 2268, 2856 |
| TspGWI | ACGGA | 2 cut(s) | 32, 1254 |
| TspMI | CCCGGG | 1 cut(s) | 191 |
| TspRI | CASTG | 6 cut(s) | 600, 1005, 1513, 1900, 2008, 2535 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2408, 2714 |
| VpaK11BI | GGWCC | 6 cut(s) | 958, 1054, 1787, 3523, 3644, 4057 |
| VspI | ATTAAT | 1 cut(s) | 2712 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 525 |
| XbaI | TCTAGA | 1 cut(s) | 424 |
| XceI | RCATGY | 3 cut(s) | 955, 2080, 3118 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 862, 2494, 3118 |
| XhoI | CTCGAG | 1 cut(s) | 155 |
| XmaI | CCCGGG | 1 cut(s) | 191 |
| XmnI | GAANNNNTTC | 2 cut(s) | 225, 269 |
| XspI | CTAG | 8 cut(s) | 425, 801, 1014, 1614, 2304, 2379, 3618, 3894 |
| Zsp2I | ATGCAT | 3 cut(s) | 1084, 3570, 4099 |