Rorug02G0394500

chromatin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007403
Physical Location & Seq
Reverse (-)
50489571 .. 50490382
812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0394500.1

Sequence Viewer

Length: 699 bp
ATGAATCTCTGCTCACACCCTCGACCACCTCCACACCCTCGACCAAACTCCACACCCTCATGGTGGAGTGAGAGAGAGCAAGTACCAACCTCTAACATCGACCTCCACTGCTGGCTCTGCTTCCCCCTCGATTTCCTCCCCTTCCGCTCCCCCCACCCCGTCGCCTCCTCCTCTGGCCTCCTCTACCTCTGGGCCGACTCCCGCGACTCTACCAAGTCCCTCGTCGTCTGCAACCCTCTCACCCGCGGCTTCCTCACCTTACCTCAGCTCGGCTCCGCCTGGTCAAGGCACGGCTCCGTCCTCGTAACTCCGCCACCCGCGTCATGGTCCTTACCTAGCTCGCCGCGCTTTACTTCTCCGCCGGCAACCACTGGCTCAAATTCTCTTCCAATCTTCCGTCCAAGCCCCGCAGCCCGATCCTCGTGGCCGACTCGGTCTTCGCGCTCTGCGACGTCGGCTCGCACAAATTTGAGGTTAAATAGGGTTTTAGAGATGGGCAAGGACGCCAAGGCCGGAGGAAAAGGCAATGGAAAAGCCGCAGCCGGCACCTGCTGCGACGAGGGCGGCGGCTCTAAGGGAAAAGGAAAGTCCGGCAAGGGCGGAGCTTTCGATGGGCTCGGCACCTGCACGTATGTGAAGGCAAGGCACTTACTTTGTGAGAAGCAGGGAAAGATCAACGAAGCCTACAAGAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

24.88

Weight (kDa)

10.01

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 557, 632
AatII GACGTC 1 cut(s) 455
Acc36I ACCTGC 2 cut(s) 557, 632
AccB1I GGYRCC 2 cut(s) 545, 620
AccBSI CCGCTC 1 cut(s) 147
AccII CGCG 5 cut(s) 204, 246, 320, 346, 442
AclWI GGATC 1 cut(s) 411
AcoI YGGCCR 1 cut(s) 425
AcsI RAATTY 2 cut(s) 379, 466
AcyI GRCGYC 2 cut(s) 452, 504
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 4 cut(s) 63, 269, 285, 324
AjnI CCWGG 1 cut(s) 278
AleI CACNNNNGTG 1 cut(s) 632
AluBI AGCT 3 cut(s) 268, 339, 605
AluI AGCT 3 cut(s) 268, 339, 605
AlwI GGATC 1 cut(s) 411
AoxI GGCC 4 cut(s) 175, 192, 425, 510
ApeKI GCWGC 3 cut(s) 410, 539, 552
ApoI RAATTY 2 cut(s) 379, 466
ArsI GACNNNNNNTTYG 2 cut(s) 421, 453
AspLEI GCGC 2 cut(s) 348, 444
AspS9I GGNCC 2 cut(s) 192, 327
AsuHPI GGTGA 2 cut(s) 232, 247
AvaII GGWCC 1 cut(s) 327
BanI GGYRCC 2 cut(s) 545, 620
BanII GRGCYC 1 cut(s) 618
BauI CACGAG 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 429
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 422, 539, 551
BccI CCATC 2 cut(s) 487, 605
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 280
BfaI CTAG 1 cut(s) 336
BfuAI ACCTGC 2 cut(s) 557, 632
BisI GCNGC 8 cut(s) 247, 344, 411, 537, 540, 553, 565, 568
BlsI GCNGC 8 cut(s) 248, 345, 412, 538, 541, 554, 566, 569
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 192, 327
BmiI GGNNCC 4 cut(s) 274, 295, 547, 622
BmrFI CCNGG 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 429
Bpu10I CCTNAGC 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 630
BsaHI GRCGYC 2 cut(s) 452, 504
BsaJI CCNNGG 2 cut(s) 244, 507
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 269, 285, 324
Bse118I RCCGGY 2 cut(s) 361, 542
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 532
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 244, 507
BseLI CCNNNNNNNGG 4 cut(s) 63, 269, 285, 324
BseMI GCAATG 1 cut(s) 532
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 3 cut(s) 157, 160, 170
BseXI GCAGC 3 cut(s) 422, 539, 551
BsgI GTGCAG 1 cut(s) 610
Bsh1236I CGCG 5 cut(s) 204, 246, 320, 346, 442
BshFI GGCC 4 cut(s) 177, 194, 427, 512
BshNI GGYRCC 2 cut(s) 545, 620
BsiSI CCGG 4 cut(s) 362, 513, 543, 591
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 4 cut(s) 63, 269, 285, 324
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 4 cut(s) 177, 194, 427, 512
Bsp1286I GDGCHC 1 cut(s) 618
Bsp143I GATC 2 cut(s) 416, 672
BspANI GGCC 4 cut(s) 177, 194, 427, 512
BspCNI CTCAG 1 cut(s) 277
BspFNI CGCG 5 cut(s) 204, 246, 320, 346, 442
BspLI GGNNCC 4 cut(s) 274, 295, 547, 622
BspMI ACCTGC 2 cut(s) 557, 632
BspPI GGATC 1 cut(s) 411
BspT107I GGYRCC 2 cut(s) 545, 620
BsrBI CCGCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 532
BsrFI RCCGGY 2 cut(s) 361, 542
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 2 cut(s) 361, 542
BssECI CCNNGG 2 cut(s) 244, 507
BssMI GATC 2 cut(s) 416, 672
BssNI GRCGYC 2 cut(s) 452, 504
BssSI CACGAG 1 cut(s) 421
BssT1I CCWWGG 1 cut(s) 507
Bst2BI CACGAG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 2 cut(s) 452, 504
BstAPI GCANNNNNTGC 1 cut(s) 552
BstBAI YACGTR 1 cut(s) 630
BstC8I GCNNGC 5 cut(s) 113, 341, 363, 460, 544
BstDEI CTNAG 2 cut(s) 264, 573
BstDSI CCRYGG 1 cut(s) 244
BstENI CCTNNNNNAGG 1 cut(s) 283
BstFNI CGCG 5 cut(s) 204, 246, 320, 346, 442
BstHHI GCGC 2 cut(s) 348, 444
BstKTI GATC 2 cut(s) 419, 675
BstMBI GATC 2 cut(s) 416, 672
BstMWI GCNNNNNNNGC 5 cut(s) 117, 345, 455, 552, 561
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstUI CGCG 5 cut(s) 204, 246, 320, 346, 442
BstV1I GCAGC 3 cut(s) 422, 539, 551
BstV2I GAAGAC 1 cut(s) 429
BsuRI GGCC 4 cut(s) 177, 194, 427, 512
BtgI CCRYGG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 106, 369
BveI ACCTGC 2 cut(s) 557, 632
Cac8I GCNNGC 5 cut(s) 113, 341, 363, 460, 544
CfoI GCGC 2 cut(s) 348, 444
Cfr10I RCCGGY 2 cut(s) 361, 542
Cfr13I GGNCC 2 cut(s) 192, 327
Cfr42I CCGCGG 1 cut(s) 247
CseI GACGC 2 cut(s) 309, 512
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 60, 324
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 264, 573
DpnI GATC 2 cut(s) 418, 674
DpnII GATC 2 cut(s) 416, 672
EaeI YGGCCR 1 cut(s) 425
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
EciI GGCGGA 4 cut(s) 265, 300, 348, 615
Eco130I CCWWGG 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 618
Eco47I GGWCC 1 cut(s) 327
EcoNI CCTNNNNNAGG 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 2 cut(s) 63, 327
FaiI YATR 3 cut(s) 61, 325, 633
FaqI GGGAC 1 cut(s) 202
FatI CATG 2 cut(s) 59, 323
FauI CCCGC 4 cut(s) 209, 251, 325, 415
Fnu4HI GCNGC 8 cut(s) 247, 344, 411, 537, 540, 553, 565, 568
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 8 cut(s) 247, 344, 411, 537, 540, 553, 565, 568
FspBI CTAG 1 cut(s) 336
GlaI GCGC 2 cut(s) 347, 443
GluI GCNGC 8 cut(s) 247, 344, 411, 537, 540, 553, 565, 568
HaeIII GGCC 4 cut(s) 177, 194, 427, 512
HapII CCGG 4 cut(s) 362, 513, 543, 591
HgaI GACGC 2 cut(s) 309, 512
HhaI GCGC 2 cut(s) 348, 444
Hin1I GRCGYC 2 cut(s) 452, 504
Hin1II CATG 2 cut(s) 63, 327
Hin6I GCGC 2 cut(s) 346, 442
HinP1I GCGC 2 cut(s) 346, 442
HinfI GANTC 4 cut(s) 4, 197, 206, 430
HpaII CCGG 4 cut(s) 362, 513, 543, 591
HphI GGTGA 2 cut(s) 232, 247
Hpy99I CGWCG 5 cut(s) 164, 227, 454, 457, 560
HpyAV CCTTC 2 cut(s) 151, 631
HpyCH4IV ACGT 2 cut(s) 452, 629
HpyCH4V TGCA 2 cut(s) 231, 627
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 345, 455, 552, 561
HpyF3I CTNAG 2 cut(s) 264, 573
HpySE526I ACGT 2 cut(s) 452, 629
Hsp92I GRCGYC 2 cut(s) 452, 504
Hsp92II CATG 2 cut(s) 63, 327
HspAI GCGC 2 cut(s) 346, 442
KroI GCCGGC 2 cut(s) 361, 542
KroNI GCCGGC 2 cut(s) 363, 544
KspI CCGCGG 1 cut(s) 247
Kzo9I GATC 2 cut(s) 416, 672
LmnI GCTCC 4 cut(s) 152, 278, 299, 602
Lsp1109I GCAGC 3 cut(s) 422, 539, 551
MaeI CTAG 1 cut(s) 336
MaeII ACGT 2 cut(s) 452, 629
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 418, 674
MbiI CCGCTC 1 cut(s) 147
MboI GATC 2 cut(s) 416, 672
MboII GAAGA 3 cut(s) 377, 385, 429
MhlI GDGCHC 1 cut(s) 618
MluCI AATT 2 cut(s) 379, 466
MlyI GAGTC 3 cut(s) 191, 200, 424
MroNI GCCGGC 2 cut(s) 361, 542
MseI TTAA 1 cut(s) 476
MslI CAYNNNNRTG 2 cut(s) 58, 632
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 4 cut(s) 362, 513, 543, 591
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 5 cut(s) 204, 246, 320, 346, 442
MwoI GCNNNNNNNGC 5 cut(s) 117, 345, 455, 552, 561
NaeI GCCGGC 2 cut(s) 363, 544
NdeII GATC 2 cut(s) 416, 672
NgoMIV GCCGGC 2 cut(s) 361, 542
NlaIII CATG 2 cut(s) 63, 327
NlaIV GGNNCC 4 cut(s) 274, 295, 547, 622
NmeAIII GCCGAG 2 cut(s) 249, 597
OliI CACNNNNGTG 1 cut(s) 632
PaqCI CACCTGC 2 cut(s) 557, 632
PcsI WCGNNNNNNNCGW 1 cut(s) 446
PdiI GCCGGC 2 cut(s) 363, 544
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 433
PkrI GCNGC 8 cut(s) 248, 345, 412, 538, 541, 554, 566, 569
PleI GAGTC 3 cut(s) 191, 200, 424
PpsI GAGTC 3 cut(s) 191, 200, 424
Ppu21I YACGTR 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 4 cut(s) 274, 295, 547, 622
PspPI GGNCC 2 cut(s) 192, 327
PsyI GACNNNGTC 1 cut(s) 433
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 2 cut(s) 58, 632
SacII CCGCGG 1 cut(s) 247
SaqAI TTAA 1 cut(s) 476
SatI GCNGC 8 cut(s) 247, 344, 411, 537, 540, 553, 565, 568
Sau3AI GATC 2 cut(s) 416, 672
Sau96I GGNCC 2 cut(s) 192, 327
SchI GAGTC 3 cut(s) 191, 200, 424
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 1 cut(s) 618
Sfr303I CCGCGG 1 cut(s) 247
SgrBI CCGCGG 1 cut(s) 247
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 2 cut(s) 58, 632
Sse9I AATT 2 cut(s) 379, 466
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 507
TaiI ACGT 2 cut(s) 455, 632
TaqI TCGA 5 cut(s) 22, 40, 99, 129, 609
TaqII GACCGA 1 cut(s) 423
TasI AATT 2 cut(s) 379, 466
TauI GCSGC 5 cut(s) 249, 346, 539, 567, 570
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TscAI CASTG 2 cut(s) 113, 376
TseI GCWGC 3 cut(s) 410, 539, 552
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 286, 386
TspRI CASTG 2 cut(s) 113, 376
Tth111I GACNNNGTC 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 327
XagI CCTNNNNNAGG 1 cut(s) 283
XapI RAATTY 2 cut(s) 379, 466
XcmI CCANNNNNNNNNTGG 1 cut(s) 321
XspI CTAG 1 cut(s) 336
ZraI GACGTC 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.