chromatin binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G72390 AT1G72390 |
| fragaria_vesca | FvH4_6g35180 FvH4_6g35180 FvH4_6g35180 FvH4_6g35180 |
| malus_domestica | MD09G1178000.v1.1 MD17G1148700.v1.1 |
| prunus_persica | Prupe.3G037300_v2.0.a1 |
| pyrus_communis | pycom09g09640 pycom17g14200 pycom17g14240 |
| rosa_chinensis | RchiOBHm_Chr2g0146441 |
| rosa_laevigata | RLG00000020201 |
| rosa_multiflora | Rmu_sc0001986.1_g000006 Rmu_sc0014617.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00100090 |
| rosa_rugosa | Rorug02G0394400 Rorug02G0394400 Rorug02G0394500 |
| rosa_samantha | Rh2AG451200 Rh2BG463700 Rh2CG438000 Rh2DG472700 |
| rosa_wichuraiana | Rw2G036830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 3029 |
| Acc65I | GGTACC | 2 cut(s) | 32, 1082 |
| AccB1I | GGYRCC | 4 cut(s) | 32, 1082, 1397, 3286 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2327 |
| AccI | GTMKAC | 1 cut(s) | 706 |
| AccII | CGCG | 1 cut(s) | 2755 |
| AclI | AACGTT | 1 cut(s) | 75 |
| AclWI | GGATC | 8 cut(s) | 477, 490, 629, 1018, 1237, 1539, 1930, 3478 |
| AcuI | CTGAAG | 4 cut(s) | 156, 204, 498, 2771 |
| AcyI | GRCGYC | 2 cut(s) | 851, 3026 |
| AfeI | AGCGCT | 1 cut(s) | 189 |
| AflII | CTTAAG | 1 cut(s) | 910 |
| AgeI | ACCGGT | 1 cut(s) | 4043 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1022 |
| AleI | CACNNNNGTG | 1 cut(s) | 415 |
| Alw21I | GWGCWC | 5 cut(s) | 1446, 1790, 3806, 3908, 3974 |
| Alw26I | GTCTC | 9 cut(s) | 25, 62, 200, 600, 1150, 1412, 1680, 2138, 2724 |
| AlwI | GGATC | 8 cut(s) | 477, 490, 629, 1018, 1237, 1539, 1930, 3478 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 209, 1019, 1796, 3502 |
| Aor51HI | AGCGCT | 1 cut(s) | 189 |
| AoxI | GGCC | 8 cut(s) | 459, 862, 1127, 1177, 1208, 2706, 3539, 3777 |
| AseI | ATTAAT | 1 cut(s) | 2628 |
| AsiGI | ACCGGT | 1 cut(s) | 4043 |
| Asp718I | GGTACC | 2 cut(s) | 32, 1082 |
| AspLEI | GCGC | 2 cut(s) | 190, 896 |
| AsuHPI | GGTGA | 5 cut(s) | 587, 1128, 3759, 3780, 3811 |
| AsuII | TTCGAA | 1 cut(s) | 2147 |
| AsuNHI | GCTAGC | 1 cut(s) | 3857 |
| AvaII | GGWCC | 8 cut(s) | 502, 1003, 1016, 1164, 1721, 3418, 3548, 4018 |
| AxyI | CCTNAGG | 1 cut(s) | 2286 |
| BaeGI | GKGCMC | 1 cut(s) | 1339 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1066, 1099 |
| BamHI | GGATCC | 1 cut(s) | 482 |
| BanI | GGYRCC | 4 cut(s) | 32, 1082, 1397, 3286 |
| BanII | GRGCYC | 7 cut(s) | 1446, 1790, 2186, 2730, 3806, 3908, 3974 |
| BauI | CACGAG | 1 cut(s) | 2677 |
| Bbv12I | GWGCWC | 5 cut(s) | 1446, 1790, 3806, 3908, 3974 |
| BbvCI | CCTCAGC | 4 cut(s) | 1168, 1903, 2919, 3747 |
| BceAI | ACGGC | 2 cut(s) | 2587, 3764 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 86, 120, 1628, 1662, 2668, 2702 |
| BciVI | GTATCC | 1 cut(s) | 1292 |
| BclI | TGATCA | 2 cut(s) | 876, 2304 |
| BcoDI | GTCTC | 9 cut(s) | 25, 62, 200, 600, 1150, 1412, 1680, 2138, 2724 |
| BfaI | CTAG | 5 cut(s) | 465, 632, 2091, 2375, 3858 |
| BfmI | CTRYAG | 6 cut(s) | 201, 1212, 1371, 2334, 2559, 3773 |
| BfoI | RGCGCY | 1 cut(s) | 191 |
| BfrI | CTTAAG | 1 cut(s) | 910 |
| BfuI | GTATCC | 1 cut(s) | 1292 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1757 |
| BglII | AGATCT | 1 cut(s) | 914 |
| BlpI | GCTNAGC | 3 cut(s) | 2619, 3902, 3968 |
| Bme18I | GGWCC | 8 cut(s) | 502, 1003, 1016, 1164, 1721, 3418, 3548, 4018 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1022 |
| BmtI | GCTAGC | 1 cut(s) | 3861 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1162 |
| BpmI | CTGGAG | 4 cut(s) | 113, 387, 1737, 2948 |
| Bpu10I | CCTNAGC | 5 cut(s) | 1168, 1903, 2919, 3747, 3907 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 2619, 3902, 3968 |
| Bpu14I | TTCGAA | 1 cut(s) | 2147 |
| BpuEI | CTTGAG | 1 cut(s) | 2706 |
| BsaHI | GRCGYC | 2 cut(s) | 851, 3026 |
| BsaI | GGTCTC | 3 cut(s) | 25, 62, 1150 |
| BsaWI | WCCGGW | 1 cut(s) | 4043 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 559, 589, 1604, 1634 |
| Bse118I | RCCGGY | 1 cut(s) | 4043 |
| Bse1I | ACTGG | 7 cut(s) | 525, 702, 1548, 1714, 1801, 1824, 2772 |
| Bse21I | CCTNAGG | 1 cut(s) | 2286 |
| Bse3DI | GCAATG | 6 cut(s) | 1194, 1788, 1914, 2346, 3065, 3540 |
| BseMI | GCAATG | 6 cut(s) | 1194, 1788, 1914, 2346, 3065, 3540 |
| BseNI | ACTGG | 7 cut(s) | 525, 702, 1548, 1714, 1801, 1824, 2772 |
| BseRI | GAGGAG | 3 cut(s) | 45, 100, 3285 |
| BseSI | GKGCMC | 1 cut(s) | 1339 |
| BseYI | CCCAGC | 2 cut(s) | 1658, 2958 |
| Bsh1236I | CGCG | 1 cut(s) | 2755 |
| BshFI | GGCC | 8 cut(s) | 461, 864, 1129, 1179, 1210, 2708, 3541, 3779 |
| BshNI | GGYRCC | 4 cut(s) | 32, 1082, 1397, 3286 |
| BshTI | ACCGGT | 1 cut(s) | 4043 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1446, 1790, 3806, 3908, 3974 |
| BsiSI | CCGG | 2 cut(s) | 1001, 4044 |
| BsiWI | CGTACG | 1 cut(s) | 1068 |
| BslFI | GGGAC | 5 cut(s) | 30, 997, 1369, 1956, 3404 |
| BsmAI | GTCTC | 9 cut(s) | 25, 62, 200, 600, 1150, 1412, 1680, 2138, 2724 |
| BsmFI | GGGAC | 5 cut(s) | 30, 997, 1369, 1956, 3404 |
| BsmI | GAATGC | 4 cut(s) | 283, 1531, 3016, 3343 |
| BsnI | GGCC | 8 cut(s) | 461, 864, 1129, 1179, 1210, 2708, 3541, 3779 |
| Bso31I | GGTCTC | 3 cut(s) | 25, 62, 1150 |
| Bsp119I | TTCGAA | 1 cut(s) | 2147 |
| Bsp1286I | GDGCHC | 8 cut(s) | 1339, 1446, 1790, 2186, 2730, 3806, 3908, 3974 |
| Bsp1407I | TGTACA | 1 cut(s) | 3034 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 2619, 3902, 3968 |
| Bsp19I | CCATGG | 3 cut(s) | 1006, 2347, 3240 |
| BspANI | GGCC | 8 cut(s) | 461, 864, 1129, 1179, 1210, 2708, 3541, 3779 |
| BspFNI | CGCG | 1 cut(s) | 2755 |
| BspHI | TCATGA | 1 cut(s) | 1539 |
| BspMAI | CTGCAG | 2 cut(s) | 205, 2563 |
| BspOI | GCTAGC | 1 cut(s) | 3861 |
| BspPI | GGATC | 8 cut(s) | 477, 490, 629, 1018, 1237, 1539, 1930, 3478 |
| BspT104I | TTCGAA | 1 cut(s) | 2147 |
| BspT107I | GGYRCC | 4 cut(s) | 32, 1082, 1397, 3286 |
| BspTI | CTTAAG | 1 cut(s) | 910 |
| BspTNI | GGTCTC | 3 cut(s) | 25, 62, 1150 |
| BsrDI | GCAATG | 6 cut(s) | 1194, 1788, 1914, 2346, 3065, 3540 |
| BsrFI | RCCGGY | 1 cut(s) | 4043 |
| BsrGI | TGTACA | 1 cut(s) | 3034 |
| BsrI | ACTGG | 7 cut(s) | 525, 702, 1548, 1714, 1801, 1824, 2772 |
| BssAI | RCCGGY | 1 cut(s) | 4043 |
| BssNAI | GTATAC | 1 cut(s) | 707 |
| BssNI | GRCGYC | 2 cut(s) | 851, 3026 |
| BssSI | CACGAG | 1 cut(s) | 2677 |
| BssT1I | CCWWGG | 6 cut(s) | 859, 1006, 1401, 1576, 2347, 3240 |
| Bst1107I | GTATAC | 1 cut(s) | 707 |
| Bst2BI | CACGAG | 1 cut(s) | 2677 |
| Bst4CI | ACNGT | 5 cut(s) | 745, 1669, 2335, 2439, 3039 |
| Bst6I | CTCTTC | 2 cut(s) | 239, 341 |
| BstACI | GRCGYC | 2 cut(s) | 851, 3026 |
| BstAFI | CTTAAG | 1 cut(s) | 910 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 2893, 3679, 3706, 3736 |
| BstAUI | TGTACA | 1 cut(s) | 3034 |
| BstBI | TTCGAA | 1 cut(s) | 2147 |
| BstC8I | GCNNGC | 7 cut(s) | 841, 2009, 2430, 2982, 3855, 3859, 3958 |
| BstDSI | CCRYGG | 3 cut(s) | 1006, 2347, 3240 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 477 |
| BstFNI | CGCG | 1 cut(s) | 2755 |
| BstH2I | RGCGCY | 1 cut(s) | 191 |
| BstHHI | GCGC | 2 cut(s) | 190, 896 |
| BstMAI | GTCTC | 9 cut(s) | 25, 62, 200, 600, 1150, 1412, 1680, 2138, 2724 |
| BstNSI | RCATGY | 3 cut(s) | 2011, 2512, 3412 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1162 |
| BstSFI | CTRYAG | 6 cut(s) | 201, 1212, 1371, 2334, 2559, 3773 |
| BstSLI | GKGCMC | 1 cut(s) | 1339 |
| BstUI | CGCG | 1 cut(s) | 2755 |
| BstX2I | RGATCY | 6 cut(s) | 482, 634, 914, 1544, 1922, 3470 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3247 |
| BstYI | RGATCY | 6 cut(s) | 482, 634, 914, 1544, 1922, 3470 |
| BstZ17I | GTATAC | 1 cut(s) | 707 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2286 |
| BsuI | GTATCC | 1 cut(s) | 1292 |
| BsuRI | GGCC | 8 cut(s) | 461, 864, 1129, 1179, 1210, 2708, 3541, 3779 |
| BtgI | CCRYGG | 3 cut(s) | 1006, 2347, 3240 |
| BtgZI | GCGATG | 2 cut(s) | 889, 3985 |
| BtsI | GCAGTG | 1 cut(s) | 1939 |
| BtsIMutI | CAGTG | 7 cut(s) | 518, 1337, 1453, 1641, 1831, 1939, 2447 |
| Cac8I | GCNNGC | 7 cut(s) | 841, 2009, 2430, 2982, 3855, 3859, 3958 |
| CaiI | CAGNNNCTG | 4 cut(s) | 209, 1019, 1796, 3502 |
| CciI | TCATGA | 1 cut(s) | 1539 |
| CfoI | GCGC | 2 cut(s) | 190, 896 |
| Cfr10I | RCCGGY | 1 cut(s) | 4043 |
| CseI | GACGC | 2 cut(s) | 859, 2744 |
| CsiI | ACCWGGT | 1 cut(s) | 35 |
| CspAI | ACCGGT | 1 cut(s) | 4043 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 667, 702 |
| DraI | TTTAAA | 2 cut(s) | 2164, 2241 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1022 |
| Eam1104I | CTCTTC | 2 cut(s) | 239, 341 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1022 |
| EarI | CTCTTC | 2 cut(s) | 239, 341 |
| EciI | GGCGGA | 2 cut(s) | 459, 494 |
| Ecl136II | GAGCTC | 5 cut(s) | 1444, 1788, 3804, 3906, 3972 |
| Eco130I | CCWWGG | 6 cut(s) | 859, 1006, 1401, 1576, 2347, 3240 |
| Eco147I | AGGCCT | 1 cut(s) | 2708 |
| Eco24I | GRGCYC | 7 cut(s) | 1446, 1790, 2186, 2730, 3806, 3908, 3974 |
| Eco31I | GGTCTC | 3 cut(s) | 25, 62, 1150 |
| Eco32I | GATATC | 2 cut(s) | 541, 1065 |
| Eco47I | GGWCC | 8 cut(s) | 502, 1003, 1016, 1164, 1721, 3418, 3548, 4018 |
| Eco47III | AGCGCT | 1 cut(s) | 189 |
| Eco53kI | GAGCTC | 5 cut(s) | 1444, 1788, 3804, 3906, 3972 |
| Eco57I | CTGAAG | 4 cut(s) | 156, 204, 498, 2771 |
| Eco81I | CCTNAGG | 1 cut(s) | 2286 |
| EcoICRI | GAGCTC | 5 cut(s) | 1444, 1788, 3804, 3906, 3972 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 477 |
| EcoO109I | RGGNCCY | 6 cut(s) | 1016, 1164, 1208, 1721, 3418, 3539 |
| EcoRI | GAATTC | 1 cut(s) | 3763 |
| EcoRV | GATATC | 2 cut(s) | 541, 1065 |
| EcoT14I | CCWWGG | 6 cut(s) | 859, 1006, 1401, 1576, 2347, 3240 |
| EcoT22I | ATGCAT | 3 cut(s) | 2644, 3465, 4054 |
| EcoT38I | GRGCYC | 7 cut(s) | 1446, 1790, 2186, 2730, 3806, 3908, 3974 |
| ErhI | CCWWGG | 6 cut(s) | 859, 1006, 1401, 1576, 2347, 3240 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 177, 209, 471, 503 |
| FaqI | GGGAC | 5 cut(s) | 30, 997, 1369, 1956, 3404 |
| FauI | CCCGC | 1 cut(s) | 2513 |
| FauNDI | CATATG | 1 cut(s) | 313 |
| FbaI | TGATCA | 2 cut(s) | 876, 2304 |
| FblI | GTMKAC | 1 cut(s) | 706 |
| FriOI | GRGCYC | 7 cut(s) | 1446, 1790, 2186, 2730, 3806, 3908, 3974 |
| FspBI | CTAG | 5 cut(s) | 465, 632, 2091, 2375, 3858 |
| GlaI | GCGC | 2 cut(s) | 189, 895 |
| GsaI | CCCAGC | 2 cut(s) | 1662, 2962 |
| GsuI | CTGGAG | 4 cut(s) | 113, 387, 1737, 2948 |
| HaeII | RGCGCY | 1 cut(s) | 191 |
| HaeIII | GGCC | 8 cut(s) | 461, 864, 1129, 1179, 1210, 2708, 3541, 3779 |
| HapII | CCGG | 2 cut(s) | 1001, 4044 |
| HgaI | GACGC | 2 cut(s) | 859, 2744 |
| HhaI | GCGC | 2 cut(s) | 190, 896 |
| Hin1I | GRCGYC | 2 cut(s) | 851, 3026 |
| Hin6I | GCGC | 2 cut(s) | 188, 894 |
| HinP1I | GCGC | 2 cut(s) | 188, 894 |
| HincII | GTYRAC | 1 cut(s) | 1498 |
| HindII | GTYRAC | 1 cut(s) | 1498 |
| HindIII | AAGCTT | 2 cut(s) | 609, 683 |
| HpaII | CCGG | 2 cut(s) | 1001, 4044 |
| HphI | GGTGA | 5 cut(s) | 587, 1128, 3759, 3780, 3811 |
| Hpy166II | GTNNAC | 7 cut(s) | 707, 1498, 2447, 2759, 3082, 3551, 3896 |
| Hpy8I | GTNNAC | 7 cut(s) | 707, 1498, 2447, 2759, 3082, 3551, 3896 |
| HpyAV | CCTTC | 9 cut(s) | 229, 473, 529, 731, 1325, 1427, 1472, 1762, 4031 |
| HpyCH4III | ACNGT | 5 cut(s) | 745, 1669, 2335, 2439, 3039 |
| HpyCH4IV | ACGT | 5 cut(s) | 75, 90, 224, 2399, 3026 |
| HpySE526I | ACGT | 5 cut(s) | 75, 90, 224, 2399, 3026 |
| Hsp92I | GRCGYC | 2 cut(s) | 851, 3026 |
| HspAI | GCGC | 2 cut(s) | 188, 894 |
| KflI | GGGWCCC | 1 cut(s) | 3418 |
| KpnI | GGTACC | 2 cut(s) | 36, 1086 |
| Ksp22I | TGATCA | 2 cut(s) | 876, 2304 |
| MabI | ACCWGGT | 1 cut(s) | 35 |
| MaeI | CTAG | 5 cut(s) | 465, 632, 2091, 2375, 3858 |
| MaeII | ACGT | 5 cut(s) | 75, 90, 224, 2399, 3026 |
| MaeIII | GTNAC | 5 cut(s) | 516, 1134, 1792, 2038, 2196 |
| MfeI | CAATTG | 5 cut(s) | 345, 3005, 3689, 3710, 3734 |
| MflI | RGATCY | 6 cut(s) | 482, 634, 914, 1544, 1922, 3470 |
| MhlI | GDGCHC | 8 cut(s) | 1339, 1446, 1790, 2186, 2730, 3806, 3908, 3974 |
| MlyI | GAGTC | 5 cut(s) | 185, 602, 979, 3493, 3901 |
| MmeI | TCCRAC | 8 cut(s) | 630, 695, 1027, 1455, 1717, 1900, 1960, 2515 |
| Mph1103I | ATGCAT | 3 cut(s) | 2644, 3465, 4054 |
| MseI | TTAA | 9 cut(s) | 15, 227, 911, 1455, 1958, 2163, 2240, 2628, 2649 |
| MslI | CAYNNNNRTG | 6 cut(s) | 288, 312, 415, 1122, 2681, 3245 |
| MspA1I | CMGCKG | 3 cut(s) | 2987, 3901, 3967 |
| MspCI | CTTAAG | 1 cut(s) | 910 |
| MspI | CCGG | 2 cut(s) | 1001, 4044 |
| MunI | CAATTG | 5 cut(s) | 345, 3005, 3689, 3710, 3734 |
| Mva1269I | GAATGC | 4 cut(s) | 283, 1531, 3016, 3343 |
| MvnI | CGCG | 1 cut(s) | 2755 |
| NcoI | CCATGG | 3 cut(s) | 1006, 2347, 3240 |
| NdeI | CATATG | 1 cut(s) | 313 |
| NheI | GCTAGC | 1 cut(s) | 3857 |
| NmeAIII | GCCGAG | 1 cut(s) | 320 |
| NmuCI | GTSAC | 4 cut(s) | 516, 1134, 2038, 2196 |
| NsiI | ATGCAT | 3 cut(s) | 2644, 3465, 4054 |
| NspI | RCATGY | 3 cut(s) | 2011, 2512, 3412 |
| NspV | TTCGAA | 1 cut(s) | 2147 |
| OliI | CACNNNNGTG | 1 cut(s) | 415 |
| PaeI | GCATGC | 1 cut(s) | 2011 |
| PagI | TCATGA | 1 cut(s) | 1539 |
| PasI | CCCWGGG | 1 cut(s) | 3199 |
| PceI | AGGCCT | 1 cut(s) | 2708 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 81, 433 |
| PctI | GAATGC | 4 cut(s) | 283, 1531, 3016, 3343 |
| PfeI | GAWTC | 9 cut(s) | 350, 667, 824, 831, 1249, 1342, 1835, 2171, 2771 |
| Pfl23II | CGTACG | 1 cut(s) | 1068 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2327 |
| PfoI | TCCNGGA | 3 cut(s) | 1102, 1565, 3466 |
| PinAI | ACCGGT | 1 cut(s) | 4043 |
| PleI | GAGTC | 5 cut(s) | 184, 601, 979, 3493, 3900 |
| PpsI | GAGTC | 5 cut(s) | 184, 601, 979, 3493, 3900 |
| PpuMI | RGGWCCY | 4 cut(s) | 1016, 1164, 1721, 3418 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1162 |
| PshBI | ATTAAT | 1 cut(s) | 2628 |
| Psp124BI | GAGCTC | 5 cut(s) | 1446, 1790, 3806, 3908, 3974 |
| Psp1406I | AACGTT | 1 cut(s) | 75 |
| Psp5II | RGGWCCY | 4 cut(s) | 1016, 1164, 1721, 3418 |
| PspFI | CCCAGC | 2 cut(s) | 1658, 2958 |
| PspLI | CGTACG | 1 cut(s) | 1068 |
| PspPPI | RGGWCCY | 4 cut(s) | 1016, 1164, 1721, 3418 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 151, 183 |
| PstI | CTGCAG | 2 cut(s) | 205, 2563 |
| PstNI | CAGNNNCTG | 4 cut(s) | 209, 1019, 1796, 3502 |
| PsuI | RGATCY | 6 cut(s) | 482, 634, 914, 1544, 1922, 3470 |
| PvuII | CAGCTG | 3 cut(s) | 2987, 3901, 3967 |
| RseI | CAYNNNNRTG | 6 cut(s) | 288, 312, 415, 1122, 2681, 3245 |
| SacI | GAGCTC | 5 cut(s) | 1446, 1790, 3806, 3908, 3974 |
| SaqAI | TTAA | 9 cut(s) | 15, 227, 911, 1455, 1958, 2163, 2240, 2628, 2649 |
| SchI | GAGTC | 5 cut(s) | 185, 602, 979, 3493, 3901 |
| SduI | GDGCHC | 8 cut(s) | 1339, 1446, 1790, 2186, 2730, 3806, 3908, 3974 |
| SexAI | ACCWGGT | 1 cut(s) | 35 |
| SfcI | CTRYAG | 6 cut(s) | 201, 1212, 1371, 2334, 2559, 3773 |
| SfuI | TTCGAA | 1 cut(s) | 2147 |
| SinI | GGWCC | 8 cut(s) | 502, 1003, 1016, 1164, 1721, 3418, 3548, 4018 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 288, 312, 415, 1122, 2681, 3245 |
| SmlI | CTYRAG | 2 cut(s) | 910, 2721 |
| SmoI | CTYRAG | 2 cut(s) | 910, 2721 |
| SphI | GCATGC | 1 cut(s) | 2011 |
| SseBI | AGGCCT | 1 cut(s) | 2708 |
| SspI | AATATT | 3 cut(s) | 1588, 2029, 3583 |
| SspMI | CTAG | 5 cut(s) | 465, 632, 2091, 2375, 3858 |
| SstI | GAGCTC | 5 cut(s) | 1446, 1790, 3806, 3908, 3974 |
| StuI | AGGCCT | 1 cut(s) | 2708 |
| StyI | CCWWGG | 6 cut(s) | 859, 1006, 1401, 1576, 2347, 3240 |
| TaaI | ACNGT | 5 cut(s) | 745, 1669, 2335, 2439, 3039 |
| TaiI | ACGT | 5 cut(s) | 78, 93, 227, 2402, 3029 |
| TaqI | TCGA | 6 cut(s) | 121, 251, 427, 1883, 2147, 2192 |
| TaqII | GACCGA | 1 cut(s) | 1174 |
| TatI | WGTACW | 2 cut(s) | 396, 3034 |
| TauI | GCSGC | 2 cut(s) | 464, 3151 |
| TfiI | GAWTC | 9 cut(s) | 350, 667, 824, 831, 1249, 1342, 1835, 2171, 2771 |
| Tru1I | TTAA | 9 cut(s) | 15, 227, 911, 1455, 1958, 2163, 2240, 2628, 2649 |
| Tru9I | TTAA | 9 cut(s) | 15, 227, 911, 1455, 1958, 2163, 2240, 2628, 2649 |
| TscAI | CASTG | 7 cut(s) | 525, 1344, 1453, 1641, 1831, 1939, 2454 |
| TseFI | GTSAC | 4 cut(s) | 516, 1134, 2038, 2196 |
| Tsp45I | GTSAC | 4 cut(s) | 516, 1134, 2038, 2196 |
| TspGWI | ACGGA | 5 cut(s) | 32, 724, 1891, 2076, 3979 |
| TspRI | CASTG | 7 cut(s) | 525, 1344, 1453, 1641, 1831, 1939, 2454 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2327 |
| Vha464I | CTTAAG | 1 cut(s) | 910 |
| VpaK11BI | GGWCC | 8 cut(s) | 502, 1003, 1016, 1164, 1721, 3418, 3548, 4018 |
| VspI | ATTAAT | 1 cut(s) | 2628 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 477 |
| XbaI | TCTAGA | 1 cut(s) | 631 |
| XceI | RCATGY | 3 cut(s) | 2011, 2512, 3412 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 646, 1733, 2413, 3307 |
| XmiI | GTMKAC | 1 cut(s) | 706 |
| XspI | CTAG | 5 cut(s) | 465, 632, 2091, 2375, 3858 |
| ZraI | GACGTC | 1 cut(s) | 3027 |
| Zsp2I | ATGCAT | 3 cut(s) | 2644, 3465, 4054 |