MD09G1179600.v1.1

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0009446
Physical Location & Seq
Forward (+)
15369351 .. 15369774
424 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1179600.v1.1.491

Sequence Viewer

Length: 348 bp
ATGGATAAAGAACTAAAGTTGCATCCAACAATCGATTGCTTCTGCAGTGGGACAACTGCGGTTACATTGGTAAAGCAGGGTCAGAATCTTGTGATTGGAAATGTTGGGGATTCAAGGGCTGTGCTAGCAACAAGAGACGATGACAACTCTCTGATTGCTGTACAGTTGACAGATGAGCCAGAGGTTGCTCGTGTATGGTTGCCGAATAATGATTCTCCTGGTTTGGCAATGGCTAGGGCCTTTGGAGATTTCTGTCTAAAGGATTTTGGTTTAATTTCCATCCCTGATGTTTGCTATCGTCATCTTACTGAAAGAGATGAGTTCATAATTTTTACCACCGAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

116

Amino Acids

12.71

Weight (kDa)

4.5

Isoelectric Point (pI)

26.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 3 - 112 2.4e-16 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AfaI GTAC 1 cut(s) 162
AgsI TTSAA 1 cut(s) 114
AjnI CCWGG 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 129
AoxI GGCC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 237
AsuNHI GCTAGC 1 cut(s) 124
BauI CACGAG 1 cut(s) 189
BccI CCATC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 2 cut(s) 125, 234
BfmI CTRYAG 1 cut(s) 43
BglII AGATCT 1 cut(s) 342
Bme1390I CCNGG 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 31
BmtI GCTAGC 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 219
BseCI ATCGAT 1 cut(s) 33
BseGI GGATG 2 cut(s) 22, 279
BseMI GCAATG 1 cut(s) 234
BshFI GGCC 1 cut(s) 239
BshVI ATCGAT 1 cut(s) 33
BslFI GGGAC 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 129
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 1 cut(s) 239
Bsp1407I TGTACA 1 cut(s) 160
Bsp143I GATC 1 cut(s) 342
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 239
BspDI ATCGAT 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 47
BspOI GCTAGC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 234
BsrGI TGTACA 1 cut(s) 160
BssMI GATC 1 cut(s) 342
BssSI CACGAG 1 cut(s) 189
Bst2BI CACGAG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 126
BstF5I GGATG 2 cut(s) 22, 279
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 342
BstYI RGATCY 1 cut(s) 342
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 1 cut(s) 239
BsuTUI ATCGAT 1 cut(s) 33
BtsCI GGATG 2 cut(s) 22, 279
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 237
ClaI ATCGAT 1 cut(s) 33
Csp6I GTAC 1 cut(s) 161
CviJI RGCY 4 cut(s) 119, 178, 233, 239
CviKI_1 RGCY 4 cut(s) 119, 178, 233, 239
CviQI GTAC 1 cut(s) 161
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 129
FaiI YATR 2 cut(s) 196, 326
FaqI GGGAC 1 cut(s) 64
FokI GGATG 2 cut(s) 9, 266
FspBI CTAG 2 cut(s) 125, 234
HaeIII GGCC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 3 cut(s) 85, 110, 212
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 3 cut(s) 84, 153, 347
Hpy8I GTNNAC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 22, 45
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
Kzo9I GATC 1 cut(s) 342
LpnPI CCDG 5 cut(s) 62, 192, 204, 231, 297
LweI GCATC 1 cut(s) 31
MaeI CTAG 2 cut(s) 125, 234
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MflI RGATCY 1 cut(s) 342
MluCI AATT 2 cut(s) 273, 327
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 1 cut(s) 175
MseI TTAA 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 1 cut(s) 342
NheI GCTAGC 1 cut(s) 124
PfeI GAWTC 3 cut(s) 85, 110, 212
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspPI GGNCC 1 cut(s) 237
PstI CTGCAG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 342
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 272
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 219
SetI ASST 1 cut(s) 186
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 43
Sse9I AATT 2 cut(s) 273, 327
SsiI CCGC 1 cut(s) 59
SspMI CTAG 2 cut(s) 125, 234
StyD4I CCNGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 33
TasI AATT 2 cut(s) 273, 327
TatI WGTACW 1 cut(s) 160
TfiI GAWTC 3 cut(s) 85, 110, 212
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 313
TspRI CASTG 1 cut(s) 52
XspI CTAG 2 cut(s) 125, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.