Rw3G009290

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009446
Physical Location & Seq
Forward (+)
8888636 .. 8891319
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G009290.1

Sequence Viewer

Length: 1359 bp
ATGGGAGGTTGCTGCACCAAAGATGCCTTGTATTATGGGAATAACATAGAGGATGATCGTTATTGTAAGGATAGTACTGAATATGAGGGTGATGATGATAACAATATAAAGTATGGGGACAATGGAGCCCGGATAAGAATGCAAGGCTCTTCTAGGTACATTTCAATGTACACTCAGCAAGGAAAAAAGGGGATCAATCAAGATGCTATGACAGTTTGGGAGGATTTTGCTGAGAAGGACATGTACTTCTGTGGTGTGTTTGATGGCCATGGCCCTGATGGTCATAAGATAGCGCGATATGTACGTGACAATTTACCTTCAAAGCTCTCCCAAGTTGTCAAAATTTACCAGCTTAACACTGGCATTTTCGACAATGCTAATGCTGCCTCAAGTTTCTTCAATCAAGAAAACAACACAAACCCCATAAGTAAAGGCAGTCAAGATTTGTCTCTTTCTTCATGGGAAGCCAGTTTTGTTAAATCATTCAAGGATATGGACGAAGAGCTTAGCCTCGATTCAACCATCGATAGCTTCTGCAGTGGTTCAACAGCTGTAAATGTAGTTAAACAGGGTGATCACTTGGTAATTGCGAACTTGGGGGATTCTCGTGCAGTTCTTGGCACTAGGGGAGAGGGTAATCAAATCGTTCCTGTCCAACTCACAGTTGATTTAAAACCGGATACTCCAAGTGAAGCAGATAGAATTAAAAAGTGCAACGGCAGAATTTTTGCATTGGATGAAGAACCGGAAGTGTACAGATTATGGATGCCGGATGAAGACTGCCCTGGTCTAGCAATGGCACGGGCCTTTGGAGATTTCTGCCTCAAAGATTATGGCCTTATCTCCATTCCTGAAGTTTGCTACAAAAACATCACAAGCGATGATGAATTTGTGGTCTTGGCAACTGATGGGGTATGGGATGCTTTGTCAAACGCTAATGTGGTAAAGATAGTTGCTTCTGCAAAGAAGCGATCTACAGCAGCGAAGTTGTTAGTCAAGCGAGCTGTTAGAGCATGGAAAAGAAAATATCCAGAATCTAAAATGGATGACTGCTCAGTTATATGCTTGTTCCTGAAAGACCAACCTTCTTTATCTCACTCAATGTCTCACGGGAGCCGGGGAAGAGTAAATGATCCGGCGCTTGTTTCTTATTACAGCACTAAATCGAATGTTCCAACCGATGAAGGAGGCACCGAAATGTCTGTTGTAAATAGCAAAATCTCAGAAGACTCAAAAGATGGGTTGAGTGATCTCGATGGTTCTACAAGAGTAAATTCCATTTTGAATGTTTCACGATATGATAACGTTTTGACCTGGCGGAAAACATCGAAGGATTTTGAAGAGGTTGAAGCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

452

Amino Acids

50.14

Weight (kDa)

4.96

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 128 - 337 1.1e-37 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1190
AccII CGCG 1 cut(s) 295
AciI CCGC 1 cut(s) 1318
AclI AACGTT 1 cut(s) 1305
AclWI GGATC 2 cut(s) 200, 1127
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 4 cut(s) 342, 723, 887, 1273
AcuI CTGAAG 1 cut(s) 873
AfaI GTAC 6 cut(s) 76, 158, 170, 245, 303, 755
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 9 cut(s) 165, 321, 400, 487, 519, 546, 1285, 1340, 1349
AjnI CCWGG 2 cut(s) 784, 1313
AluBI AGCT 7 cut(s) 325, 352, 505, 531, 551, 1004, 1352
AluI AGCT 7 cut(s) 325, 352, 505, 531, 551, 1004, 1352
Alw26I GTCTC 2 cut(s) 453, 1110
AlwI GGATC 2 cut(s) 200, 1127
AoxI GGCC 4 cut(s) 265, 271, 804, 835
ApeKI GCWGC 3 cut(s) 12, 383, 980
ApoI RAATTY 4 cut(s) 342, 723, 887, 1273
AspLEI GCGC 2 cut(s) 295, 1141
AspS9I GGNCC 2 cut(s) 272, 804
AsuC2I CCSGG 2 cut(s) 130, 1118
AsuHPI GGTGA 2 cut(s) 101, 584
BalI TGGCCA 1 cut(s) 267
BanI GGYRCC 1 cut(s) 1190
BanII GRGCYC 1 cut(s) 130
BarI GAAGNNNNNNTAC 2 cut(s) 227, 259
BauI CACGAG 1 cut(s) 606
BbsI GAAGAC 2 cut(s) 783, 1233
BbvI GCAGC 2 cut(s) 370, 992
BccI CCATC 6 cut(s) 257, 272, 530, 902, 1232, 1250
BceAI ACGGC 1 cut(s) 733
BciT130I CCWGG 2 cut(s) 786, 1315
BciVI GTATCC 1 cut(s) 673
BclI TGATCA 1 cut(s) 574
BcnI CCSGG 2 cut(s) 130, 1118
BcoDI GTCTC 2 cut(s) 453, 1110
BfaI CTAG 3 cut(s) 153, 624, 791
BfmI CTRYAG 2 cut(s) 535, 975
BfoI RGCGCY 1 cut(s) 1142
BfuI GTATCC 1 cut(s) 673
BisI GCNGC 3 cut(s) 13, 384, 981
BlpI GCTNAGC 1 cut(s) 506
BlsI GCNGC 3 cut(s) 14, 385, 982
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 4 cut(s) 130, 786, 1118, 1315
BmgT120I GGNCC 2 cut(s) 272, 804
BmiI GGNNCC 3 cut(s) 127, 1115, 1192
BmrFI CCNGG 4 cut(s) 130, 786, 1118, 1315
BmsI GCATC 4 cut(s) 13, 193, 756, 910
BpiI GAAGAC 2 cut(s) 783, 1233
Bpu1102I GCTNAGC 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 373
BpuMI CCSGG 2 cut(s) 130, 1118
Bsa29I ATCGAT 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 268, 784, 1117
BsaWI WCCGGW 2 cut(s) 676, 745
Bse1I ACTGG 2 cut(s) 364, 468
Bse3DI GCAATG 1 cut(s) 801
BseBI CCWGG 2 cut(s) 786, 1315
BseCI ATCGAT 1 cut(s) 525
BseDI CCNNGG 3 cut(s) 268, 784, 1117
BseGI GGATG 6 cut(s) 58, 742, 771, 778, 925, 1051
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 4 cut(s) 188, 222, 1068, 1236
BseNI ACTGG 2 cut(s) 364, 468
BseXI GCAGC 2 cut(s) 370, 992
BsgI GTGCAG 1 cut(s) 630
Bsh1236I CGCG 1 cut(s) 295
BshFI GGCC 4 cut(s) 267, 273, 806, 837
BshNI GGYRCC 1 cut(s) 1190
BshVI ATCGAT 1 cut(s) 525
BsiSI CCGG 6 cut(s) 130, 677, 746, 770, 1117, 1136
BslFI GGGAC 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 453, 1110
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 4 cut(s) 267, 273, 806, 837
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 2 cut(s) 168, 753
Bsp143I GATC 6 cut(s) 55, 192, 574, 971, 1132, 1249
Bsp1720I GCTNAGC 1 cut(s) 506
Bsp19I CCATGG 1 cut(s) 268
BspACI CCGC 1 cut(s) 1318
BspANI GGCC 4 cut(s) 267, 273, 806, 837
BspCNI CTCAG 4 cut(s) 187, 223, 1067, 1235
BspDI ATCGAT 1 cut(s) 525
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 3 cut(s) 127, 1115, 1192
BspMAI CTGCAG 1 cut(s) 539
BspPI GGATC 2 cut(s) 200, 1127
BspQI GCTCTTC 2 cut(s) 154, 495
BspT107I GGYRCC 1 cut(s) 1190
BsrDI GCAATG 1 cut(s) 801
BsrGI TGTACA 2 cut(s) 168, 753
BsrI ACTGG 2 cut(s) 364, 468
BssECI CCNNGG 3 cut(s) 268, 784, 1117
BssMI GATC 6 cut(s) 55, 192, 574, 971, 1132, 1249
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 268
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 786, 1315
Bst4CI ACNGT 2 cut(s) 214, 664
Bst6I CTCTTC 4 cut(s) 154, 495, 1117, 1335
BstAUI TGTACA 2 cut(s) 168, 753
BstBAI YACGTR 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 1002
BstDEI CTNAG 5 cut(s) 174, 231, 506, 1054, 1222
BstDSI CCRYGG 1 cut(s) 268
BstF5I GGATG 6 cut(s) 58, 742, 771, 778, 925, 1051
BstFNI CGCG 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 1142
BstHHI GCGC 2 cut(s) 295, 1141
BstKTI GATC 6 cut(s) 58, 195, 577, 974, 1135, 1252
BstMAI GTCTC 2 cut(s) 453, 1110
BstMBI GATC 6 cut(s) 55, 192, 574, 971, 1132, 1249
BstMWI GCNNNNNNNGC 2 cut(s) 383, 1010
BstNI CCWGG 2 cut(s) 786, 1315
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 4 cut(s) 128, 784, 1116, 1313
BstSFI CTRYAG 2 cut(s) 535, 975
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 370, 992
BstV2I GAAGAC 2 cut(s) 783, 1233
Bsu15I ATCGAT 1 cut(s) 525
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 4 cut(s) 267, 273, 806, 837
BsuTUI ATCGAT 1 cut(s) 525
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 894
BtsCI GGATG 6 cut(s) 58, 742, 771, 778, 925, 1051
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 2 cut(s) 357, 544
Cac8I GCNNGC 1 cut(s) 1002
CfoI GCGC 2 cut(s) 295, 1141
Cfr13I GGNCC 2 cut(s) 272, 804
ClaI ATCGAT 1 cut(s) 525
Csp6I GTAC 6 cut(s) 75, 157, 169, 244, 302, 754
CviAII CATG 4 cut(s) 241, 269, 459, 1014
CviQI GTAC 6 cut(s) 75, 157, 169, 244, 302, 754
DdeI CTNAG 5 cut(s) 174, 231, 506, 1054, 1222
DpnI GATC 6 cut(s) 57, 194, 576, 973, 1134, 1251
DpnII GATC 6 cut(s) 55, 192, 574, 971, 1132, 1249
DraI TTTAAA 1 cut(s) 672
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 4 cut(s) 154, 495, 1117, 1335
EarI CTCTTC 4 cut(s) 154, 495, 1117, 1335
EciI GGCGGA 1 cut(s) 1333
Eco130I CCWWGG 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 873
EcoRII CCWGG 2 cut(s) 784, 1313
EcoT14I CCWWGG 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 4 cut(s) 244, 272, 462, 1017
FaqI GGGAC 1 cut(s) 131
FatI CATG 4 cut(s) 240, 268, 458, 1013
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 3 cut(s) 13, 384, 981
FokI GGATG 6 cut(s) 65, 749, 778, 785, 932, 1058
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 13, 384, 981
FspBI CTAG 3 cut(s) 153, 624, 791
GlaI GCGC 2 cut(s) 294, 1140
GluI GCNGC 3 cut(s) 13, 384, 981
HaeII RGCGCY 1 cut(s) 1142
HaeIII GGCC 4 cut(s) 267, 273, 806, 837
HapII CCGG 6 cut(s) 130, 677, 746, 770, 1117, 1136
HhaI GCGC 2 cut(s) 295, 1141
Hin1II CATG 4 cut(s) 244, 272, 462, 1017
Hin6I GCGC 2 cut(s) 293, 1139
HinP1I GCGC 2 cut(s) 293, 1139
HinfI GANTC 4 cut(s) 515, 602, 1034, 1229
HpaII CCGG 6 cut(s) 130, 677, 746, 770, 1117, 1136
HphI GGTGA 2 cut(s) 101, 584
Hpy166II GTNNAC 2 cut(s) 171, 754
Hpy188I TCNGA 1 cut(s) 1225
Hpy188III TCNNGA 8 cut(s) 200, 404, 440, 851, 1031, 1072, 1253, 1293
Hpy8I GTNNAC 2 cut(s) 171, 754
HpyAV CCTTC 5 cut(s) 229, 327, 1095, 1178, 1324
HpyCH4III ACNGT 2 cut(s) 214, 664
HpyCH4IV ACGT 2 cut(s) 304, 1305
HpyCH4V TGCA 7 cut(s) 15, 142, 537, 611, 714, 731, 962
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 1010
HpyF3I CTNAG 5 cut(s) 174, 231, 506, 1054, 1222
HpySE526I ACGT 2 cut(s) 304, 1305
Hsp92II CATG 4 cut(s) 244, 272, 462, 1017
HspAI GCGC 2 cut(s) 293, 1139
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 6 cut(s) 55, 192, 574, 971, 1132, 1249
LguI GCTCTTC 2 cut(s) 154, 495
LmnI GCTCC 2 cut(s) 125, 1113
Lsp1109I GCAGC 2 cut(s) 370, 992
LweI GCATC 4 cut(s) 13, 193, 756, 910
MaeI CTAG 3 cut(s) 153, 624, 791
MaeII ACGT 2 cut(s) 304, 1305
MaeIII GTNAC 1 cut(s) 305
MalI GATC 6 cut(s) 57, 194, 576, 973, 1134, 1251
MboI GATC 6 cut(s) 55, 192, 574, 971, 1132, 1249
MboII GAAGA 9 cut(s) 141, 388, 447, 512, 752, 788, 1134, 1238, 1352
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 7 cut(s) 310, 342, 585, 702, 723, 887, 1273
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 1223
MmeI TCCRAC 2 cut(s) 679, 1199
MnlI CCTC 9 cut(s) 43, 79, 214, 397, 521, 625, 833, 1181, 1336
Mox20I TGGCCA 1 cut(s) 267
MscI TGGCCA 1 cut(s) 267
MseI TTAA 6 cut(s) 354, 477, 564, 671, 705, 1357
MslI CAYNNNNRTG 2 cut(s) 164, 1196
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 6 cut(s) 130, 677, 746, 770, 1117, 1136
MspR9I CCNGG 4 cut(s) 130, 786, 1118, 1315
Mva1269I GAATGC 1 cut(s) 144
MvaI CCWGG 2 cut(s) 786, 1315
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 2 cut(s) 383, 1010
NciI CCSGG 2 cut(s) 130, 1118
NcoI CCATGG 1 cut(s) 268
NdeII GATC 6 cut(s) 55, 192, 574, 971, 1132, 1249
NlaIII CATG 4 cut(s) 244, 272, 462, 1017
NlaIV GGNNCC 3 cut(s) 127, 1115, 1192
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 1 cut(s) 244
PciI ACATGT 1 cut(s) 240
PciSI GCTCTTC 2 cut(s) 154, 495
PctI GAATGC 1 cut(s) 144
PfeI GAWTC 3 cut(s) 515, 602, 1034
PkrI GCNGC 3 cut(s) 14, 385, 982
PleI GAGTC 1 cut(s) 1223
PpsI GAGTC 1 cut(s) 1223
Ppu21I YACGTR 1 cut(s) 305
PscI ACATGT 1 cut(s) 240
Psp1406I AACGTT 1 cut(s) 1305
Psp6I CCWGG 2 cut(s) 784, 1313
PspGI CCWGG 2 cut(s) 784, 1313
PspN4I GGNNCC 3 cut(s) 127, 1115, 1192
PspPI GGNCC 2 cut(s) 272, 804
PstI CTGCAG 1 cut(s) 539
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 6 cut(s) 76, 158, 170, 245, 303, 755
RsaNI GTAC 6 cut(s) 75, 157, 169, 244, 302, 754
RseI CAYNNNNRTG 2 cut(s) 164, 1196
SapI GCTCTTC 2 cut(s) 154, 495
SaqAI TTAA 6 cut(s) 354, 477, 564, 671, 705, 1357
SatI GCNGC 3 cut(s) 13, 384, 981
Sau3AI GATC 6 cut(s) 55, 192, 574, 971, 1132, 1249
Sau96I GGNCC 2 cut(s) 272, 804
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 1223
ScrFI CCNGG 4 cut(s) 130, 786, 1118, 1315
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 4 cut(s) 13, 193, 756, 910
SfcI CTRYAG 2 cut(s) 535, 975
SmiMI CAYNNNNRTG 2 cut(s) 164, 1196
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 7 cut(s) 310, 342, 585, 702, 723, 887, 1273
SsiI CCGC 1 cut(s) 1318
SspMI CTAG 3 cut(s) 153, 624, 791
StyD4I CCNGG 4 cut(s) 128, 784, 1116, 1313
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 2 cut(s) 214, 664
TaiI ACGT 2 cut(s) 307, 1308
TaqI TCGA 6 cut(s) 369, 513, 525, 1166, 1254, 1328
TasI AATT 7 cut(s) 310, 342, 585, 702, 723, 887, 1273
TatI WGTACW 4 cut(s) 74, 168, 243, 753
TfiI GAWTC 3 cut(s) 515, 602, 1034
Tru1I TTAA 6 cut(s) 354, 477, 564, 671, 705, 1357
Tru9I TTAA 6 cut(s) 354, 477, 564, 671, 705, 1357
TscAI CASTG 2 cut(s) 364, 544
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 3 cut(s) 12, 383, 980
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 5 cut(s) 447, 753, 789, 900, 1197
TspRI CASTG 2 cut(s) 364, 544
XapI RAATTY 4 cut(s) 342, 723, 887, 1273
XceI RCATGY 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 2 cut(s) 275, 356
XspI CTAG 3 cut(s) 153, 624, 791
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.