Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014309.1

Orthogroup ID

OG0009446

Physical Location & Seq

Genomic Coordinates Reverse (-)

26655 .. 28180

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014309.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgggaggttgctgcaccaaagatgccttgtattatgggaataacatagaggatgatcgttattgtaaggatagtactgaatatgagggtgatgatgataacaatataaagtatggggacaatggagcccggataagaatgcaaggctcttctaggtacatttcaatgtacactcagcaaggaaaaaaggggatcaatcaagatgctatgacagtttgggaggattttgctgagaaggacatgtacttctgtggtgtgtttgatggccatggccctgatggtcataagatagcgcgatatgtacgtgacaatttaccttcaaagctctcccaagttgtcaaaatttaccagcttaacactggcattttcgacaatgctaatgctgcctcaagtttcttcaatcaagaaaacaacacaaaccccataagtaaaggcagtcaagatttgtctctttcttcatgggaagccagttttgttaaatcattcaaggatatggacgaagagcttagcctcgattcaaccatcgatagcttctgcagtggttcaacagctgtaaatgtagttaaacagggtgatcacttggtaattgcgaacttgggggattctcgtgcagttcttggcactaggggagaggataatcaaatcgttcctgtccaactcacagttgatttaaaaccggatactccaagtgaagcagatagaattaaaaagtgcaacggcagaatttttgcattggatgaagaaccggaagtgtacagattatggatgccggatgaagactgccctggtctagcaatggcacgggcctttggagatttctgcctcaaagattatggccttatctccattcctgaagtttgctacaaaaacatcacaagcgatgatgaatttgtggtcttggcaactgatggggtaggaacaaaaactttgttacttcatgaccaggttacttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

318

Amino Acids

35.4

Weight (kDa)

4.51

Isoelectric Point (pI)

27.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01700 AT5G01700
fragaria_vesca	FvH4_6g10560
malus_domestica	MD04G1167100.v1.1 MD09G1179600.v1.1 MD12G1180700.v1.1
prunus_persica	Prupe.6G285600_v2.0.a1 Prupe.6G285600_v2.0.a1
pyrus_communis	pycom12g17030
rosa_chinensis	RchiOBHm_Chr3g0461551
rosa_laevigata	RLG00000024922
rosa_multiflora	Rmu_co8091094.1_g000001 Rmu_sc0014309.1_g000005 Rmu_sc0014309.1_g000006
rosa_roxburghii	Rroxscaffold_6G00418170 Rroxscaffold_6G00418530
rosa_rugosa	Rorug03G0051700
rosa_samantha	Rh3AG109800 Rh3BG113200 Rh3CG115000 Rh3DG114800
rosa_wichuraiana	Rw3G009290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	295
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	3 cut(s)	342, 723, 887
AcuI	CTGAAG	1 cut(s)	873
AfaI	GTAC	6 cut(s)	76, 158, 170, 245, 303, 755
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	6 cut(s)	165, 321, 400, 487, 519, 546
AjnI	CCWGG	2 cut(s)	784, 942
AluBI	AGCT	5 cut(s)	325, 352, 505, 531, 551
AluI	AGCT	5 cut(s)	325, 352, 505, 531, 551
Alw26I	GTCTC	1 cut(s)	453
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	4 cut(s)	265, 271, 804, 835
ApeKI	GCWGC	2 cut(s)	12, 383
ApoI	RAATTY	3 cut(s)	342, 723, 887
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	272, 804
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	101, 584
BalI	TGGCCA	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	130
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	783
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	4 cut(s)	257, 272, 530, 902
BceAI	ACGGC	1 cut(s)	733
BciT130I	CCWGG	2 cut(s)	786, 944
BciVI	GTATCC	1 cut(s)	673
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	3 cut(s)	153, 624, 791
BfmI	CTRYAG	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	673
BisI	GCNGC	2 cut(s)	13, 384
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	2 cut(s)	14, 385
BmcAI	AGTACT	1 cut(s)	76
Bme1390I	CCNGG	3 cut(s)	130, 786, 944
BmgT120I	GGNCC	2 cut(s)	272, 804
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	3 cut(s)	130, 786, 944
BmsI	GCATC	3 cut(s)	13, 193, 756
BpiI	GAAGAC	1 cut(s)	783
Bpu1102I	GCTNAGC	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	373
BpuMI	CCSGG	1 cut(s)	130
Bsa29I	ATCGAT	1 cut(s)	525
BsaAI	YACGTR	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	268, 784
BsaWI	WCCGGW	2 cut(s)	676, 745
Bse1I	ACTGG	2 cut(s)	364, 468
Bse3DI	GCAATG	1 cut(s)	801
BseBI	CCWGG	2 cut(s)	786, 944
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	268, 784
BseGI	GGATG	4 cut(s)	58, 742, 771, 778
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	2 cut(s)	188, 222
BseNI	ACTGG	2 cut(s)	364, 468
BseXI	GCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	4 cut(s)	267, 273, 806, 837
BshVI	ATCGAT	1 cut(s)	525
BsiSI	CCGG	4 cut(s)	130, 677, 746, 770
BslFI	GGGAC	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	4 cut(s)	267, 273, 806, 837
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp1407I	TGTACA	2 cut(s)	168, 753
Bsp143I	GATC	3 cut(s)	55, 192, 574
Bsp1720I	GCTNAGC	1 cut(s)	506
Bsp19I	CCATGG	1 cut(s)	268
BspANI	GGCC	4 cut(s)	267, 273, 806, 837
BspCNI	CTCAG	2 cut(s)	187, 223
BspDI	ATCGAT	1 cut(s)	525
BspFNI	CGCG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	937
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	539
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	2 cut(s)	154, 495
BsrDI	GCAATG	1 cut(s)	801
BsrGI	TGTACA	2 cut(s)	168, 753
BsrI	ACTGG	2 cut(s)	364, 468
BssECI	CCNNGG	2 cut(s)	268, 784
BssMI	GATC	3 cut(s)	55, 192, 574
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	268
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	786, 944
Bst4CI	ACNGT	2 cut(s)	214, 664
Bst6I	CTCTTC	2 cut(s)	154, 495
BstAUI	TGTACA	2 cut(s)	168, 753
BstBAI	YACGTR	1 cut(s)	305
BstDEI	CTNAG	3 cut(s)	174, 231, 506
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	4 cut(s)	58, 742, 771, 778
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	3 cut(s)	58, 195, 577
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	3 cut(s)	55, 192, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	2 cut(s)	786, 944
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	3 cut(s)	128, 784, 942
BstSFI	CTRYAG	1 cut(s)	535
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	370
BstV2I	GAAGAC	1 cut(s)	783
Bsu15I	ATCGAT	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	4 cut(s)	267, 273, 806, 837
BsuTUI	ATCGAT	1 cut(s)	525
BtgI	CCRYGG	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	894
BtsCI	GGATG	4 cut(s)	58, 742, 771, 778
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	357, 544
CciI	TCATGA	1 cut(s)	937
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	272, 804
ClaI	ATCGAT	1 cut(s)	525
CsiI	ACCWGGT	1 cut(s)	942
Csp6I	GTAC	6 cut(s)	75, 157, 169, 244, 302, 754
CviAII	CATG	4 cut(s)	241, 269, 459, 938
CviQI	GTAC	6 cut(s)	75, 157, 169, 244, 302, 754
DdeI	CTNAG	3 cut(s)	174, 231, 506
DpnI	GATC	3 cut(s)	57, 194, 576
DpnII	GATC	3 cut(s)	55, 192, 574
DraI	TTTAAA	1 cut(s)	672
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	2 cut(s)	154, 495
EarI	CTCTTC	2 cut(s)	154, 495
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	873
EcoRII	CCWGG	2 cut(s)	784, 942
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	4 cut(s)	244, 272, 462, 941
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	4 cut(s)	240, 268, 458, 937
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	2 cut(s)	13, 384
FokI	GGATG	4 cut(s)	65, 749, 778, 785
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	13, 384
FspBI	CTAG	3 cut(s)	153, 624, 791
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	2 cut(s)	13, 384
HaeIII	GGCC	4 cut(s)	267, 273, 806, 837
HapII	CCGG	4 cut(s)	130, 677, 746, 770
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	4 cut(s)	244, 272, 462, 941
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	2 cut(s)	515, 602
HpaII	CCGG	4 cut(s)	130, 677, 746, 770
HphI	GGTGA	2 cut(s)	101, 584
Hpy166II	GTNNAC	2 cut(s)	171, 754
Hpy188III	TCNNGA	5 cut(s)	200, 404, 440, 851, 938
Hpy8I	GTNNAC	2 cut(s)	171, 754
HpyAV	CCTTC	2 cut(s)	229, 327
HpyCH4III	ACNGT	2 cut(s)	214, 664
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	6 cut(s)	15, 142, 537, 611, 714, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	3 cut(s)	174, 231, 506
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	4 cut(s)	244, 272, 462, 941
HspAI	GCGC	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	55, 192, 574
LguI	GCTCTTC	2 cut(s)	154, 495
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	3 cut(s)	13, 193, 756
MabI	ACCWGGT	1 cut(s)	942
MaeI	CTAG	3 cut(s)	153, 624, 791
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	3 cut(s)	305, 930, 946
MalI	GATC	3 cut(s)	57, 194, 576
MboI	GATC	3 cut(s)	55, 192, 574
MboII	GAAGA	6 cut(s)	141, 388, 447, 512, 752, 788
MhlI	GDGCHC	1 cut(s)	130
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	6 cut(s)	310, 342, 585, 702, 723, 887
MluNI	TGGCCA	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	679
MnlI	CCTC	7 cut(s)	43, 79, 214, 397, 521, 625, 833
Mox20I	TGGCCA	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	5 cut(s)	354, 477, 564, 671, 705
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	4 cut(s)	130, 677, 746, 770
MspR9I	CCNGG	3 cut(s)	130, 786, 944
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	2 cut(s)	786, 944
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	383
NciI	CCSGG	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	3 cut(s)	55, 192, 574
NlaIII	CATG	4 cut(s)	244, 272, 462, 941
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	244
PagI	TCATGA	1 cut(s)	937
PciI	ACATGT	1 cut(s)	240
PciSI	GCTCTTC	2 cut(s)	154, 495
PctI	GAATGC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	515, 602
PkrI	GCNGC	2 cut(s)	14, 385
Ppu21I	YACGTR	1 cut(s)	305
PscI	ACATGT	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	784, 942
PspGI	CCWGG	2 cut(s)	784, 942
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	272, 804
PstI	CTGCAG	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	6 cut(s)	76, 158, 170, 245, 303, 755
RsaNI	GTAC	6 cut(s)	75, 157, 169, 244, 302, 754
RseI	CAYNNNNRTG	1 cut(s)	164
SapI	GCTCTTC	2 cut(s)	154, 495
SaqAI	TTAA	5 cut(s)	354, 477, 564, 671, 705
SatI	GCNGC	2 cut(s)	13, 384
Sau3AI	GATC	3 cut(s)	55, 192, 574
Sau96I	GGNCC	2 cut(s)	272, 804
ScaI	AGTACT	1 cut(s)	76
ScrFI	CCNGG	3 cut(s)	130, 786, 944
SduI	GDGCHC	1 cut(s)	130
SexAI	ACCWGGT	1 cut(s)	942
SfaNI	GCATC	3 cut(s)	13, 193, 756
SfcI	CTRYAG	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
Sse9I	AATT	6 cut(s)	310, 342, 585, 702, 723, 887
SspMI	CTAG	3 cut(s)	153, 624, 791
StyD4I	CCNGG	3 cut(s)	128, 784, 942
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	2 cut(s)	214, 664
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	3 cut(s)	369, 513, 525
TasI	AATT	6 cut(s)	310, 342, 585, 702, 723, 887
TatI	WGTACW	4 cut(s)	74, 168, 243, 753
TfiI	GAWTC	2 cut(s)	515, 602
Tru1I	TTAA	5 cut(s)	354, 477, 564, 671, 705
Tru9I	TTAA	5 cut(s)	354, 477, 564, 671, 705
TscAI	CASTG	2 cut(s)	364, 544
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	12, 383
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	5 cut(s)	447, 753, 789, 900, 926
TspRI	CASTG	2 cut(s)	364, 544
XapI	RAATTY	3 cut(s)	342, 723, 887
XceI	RCATGY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	2 cut(s)	275, 356
XspI	CTAG	3 cut(s)	153, 624, 791
ZrmI	AGTACT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.