Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009446

Physical Location & Seq

Genomic Coordinates Reverse (-)

19308221 .. 19311029

Gene Structure 2809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGAGCTTGTTGTAGCAAGGAGAAATTGCATGGAGGAGGGTACATGGAGGATGATCGTATGGCCAATCGGAATGAGTATTCCGAAACTGATAAGGAAGAGGATAGTGTAAGGTGTGGGGACGATGGGGCACGCATAAGGTTGGAAGGGTGTTCTAGGAACATATCCATGTACACCCAGCAAGGAAGAAAAGGGATCAATCAAGATGCAATGACAGTTTGGGAGGACTTTACTGAGAAAGGCATGCACTTCTGCGGTGTGTTTGATGGTCATGGCCCCGACGGTCACAAAGTTGCAAGATGTGTACGTGACAATTTACCCTCAAAGCTCTCCGAAGTCATCAAAATTTACCAGCTCAACACCGGCATATTCAGCGACATCAATGTTGCCGGAAGCGAGCACAATGCAAACAACGGTAAAAGTCACGATAGGAAAGCCAGTAGCGATCTCTCTCTTCCGTCATGGGAAGCCAGTTTCGTTAAATCATTCAAGGAAATGGATGAAGAACTGAGCCTCGATAACACCATTGATAGCTTCTGCAGTGGTTCAACAGCTGTAACTGTAGTTAAACAGGGTGATCATTTGGTGATTGCCAACTTAGGCGATTCTCGTGCAGTTCTTGGAACTAGATCAGGAGAGAAAAACCAAATCGTTCCTGTCCAGCTCACAGTTGATTTGAAACCTGATACTCCAAGTGAAGCTGAGCGAATTATGAAATGCAAAGGCAGGATTTTATCAGTGGAGGGAGAACCACAAGTGTTTAGATTATGGATGCCGGATGAAGACTGCCCTGGTCTTGCAATGGCAAGAGCTTTCGGGGATTTCTGTGTCAAAGATTACGGTCTAACCTCAAGTCCGGAAGTTTTCTACAGGAAGATATCAAGTGATGATGAATTTGTGGTCTTGGCAACTGATGGGATTTGGGATGCTTTAACAAACAGTGATGTGGTAAAGATAGTTGCATCAGCAAGGAAGCGATCCATGGCAGCAGAATTACTAGTAAAGCGTGCAGTTAGAGCTTGGAAACGAAAGTTCCCCCAATCGAAAATTGATGATTGTGCGGTTATATGCTTGTTCCTGAAAGACCAACCTGCTTCTTCATTAACACAATCCGATTCCCATGCGAGCCGTGTAGGCAAAGGAAATGACTCTGAGCTTTCCCTTTCTTACTATAGCAAAAGATCGAATGTTGCAAGCGATCAGGGAGGCCCTGCATCCGAGATCAACAGCAAGATGATGGAGGATGAGAAGGATACCGTGTTGAACTGTAATGTCTCACAAGACGCAAAGGAAGAGTGGAAAGCCATTAAAGGTGTTGACAGAGTAAATACCATGTTGAAGCTTCCTCAATTTTCTAATGGTTTGAGTCGGAGGAAAACATCGAAGGATTACGAAGAGGTTGAAGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

471

Amino Acids

52.01

Weight (kDa)

5.49

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01700 AT5G01700
fragaria_vesca	FvH4_6g10560
malus_domestica	MD04G1167100.v1.1 MD09G1179600.v1.1 MD12G1180700.v1.1
prunus_persica	Prupe.6G285600_v2.0.a1 Prupe.6G285600_v2.0.a1
pyrus_communis	pycom12g17030
rosa_chinensis	RchiOBHm_Chr3g0461551
rosa_laevigata	RLG00000024922
rosa_multiflora	Rmu_co8091094.1_g000001 Rmu_sc0014309.1_g000005 Rmu_sc0014309.1_g000006
rosa_roxburghii	Rroxscaffold_6G00418170 Rroxscaffold_6G00418530
rosa_rugosa	Rorug03G0051700
rosa_samantha	Rh3AG109800 Rh3BG113200 Rh3CG115000 Rh3DG114800
rosa_wichuraiana	Rw3G009290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1099
AccIII	TCCGGA	1 cut(s)	856
AciI	CCGC	2 cut(s)	255, 1061
AclWI	GGATC	2 cut(s)	203, 972
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	345, 893
AfaI	GTAC	3 cut(s)	44, 173, 306
AgsI	TTSAA	6 cut(s)	490, 549, 679, 1264, 1339, 1403
AhlI	ACTAGT	1 cut(s)	997
AjnI	CCWGG	1 cut(s)	790
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	1279
AlwI	GGATC	2 cut(s)	203, 972
Aor13HI	TCCGGA	1 cut(s)	856
AoxI	GGCC	3 cut(s)	63, 274, 1207
ApeKI	GCWGC	1 cut(s)	986
ApoI	RAATTY	2 cut(s)	345, 893
AspS9I	GGNCC	2 cut(s)	275, 1208
AsuHPI	GGTGA	2 cut(s)	587, 598
BaeGI	GKGCMC	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	65
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	998
BccI	CCATC	4 cut(s)	119, 260, 908, 1231
BceAI	ACGGC	1 cut(s)	1113
BcgI	CGANNNNNNTGC	6 cut(s)	386, 420, 593, 627, 1103, 1137
BciT130I	CCWGG	1 cut(s)	792
BciVI	GTATCC	1 cut(s)	1246
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	1 cut(s)	1279
BcuI	ACTAGT	1 cut(s)	997
BfaI	CTAG	3 cut(s)	156, 627, 998
BfmI	CTRYAG	4 cut(s)	538, 561, 868, 1171
BfuAI	ACCTGC	1 cut(s)	1099
BfuI	GTATCC	1 cut(s)	1246
BglI	GCCNNNNNGGC	1 cut(s)	1134
BisI	GCNGC	1 cut(s)	987
BlpI	GCTNAGC	1 cut(s)	702
BlsI	GCNGC	1 cut(s)	988
Bme1390I	CCNGG	1 cut(s)	792
BmgT120I	GGNCC	2 cut(s)	275, 1208
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	792
BmsI	GCATC	5 cut(s)	196, 762, 916, 971, 1223
BpiI	GAAGAC	1 cut(s)	789
Bpu1102I	GCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	835
BsaAI	YACGTR	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	790, 981
BsaWI	WCCGGW	1 cut(s)	856
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	438, 471
Bse3DI	GCAATG	2 cut(s)	216, 807
BseAI	TCCGGA	1 cut(s)	856
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	2 cut(s)	790, 981
BseGI	GGATG	7 cut(s)	58, 505, 777, 784, 931, 1214, 1249
BseMI	GCAATG	2 cut(s)	216, 807
BseMII	CTCAG	4 cut(s)	225, 500, 693, 1143
BseNI	ACTGG	2 cut(s)	438, 471
BseRI	GAGGAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	998
BseYI	CCCAGC	1 cut(s)	177
BsgI	GTGCAG	2 cut(s)	633, 1029
BshFI	GGCC	3 cut(s)	65, 276, 1209
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	4 cut(s)	363, 390, 776, 857
BslFI	GGGAC	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	1279
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	3 cut(s)	65, 276, 1209
Bsp1286I	GDGCHC	2 cut(s)	133, 402
Bsp13I	TCCGGA	1 cut(s)	856
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	9 cut(s)	55, 195, 445, 577, 629, 977, 1181, 1198, 1221
Bsp1720I	GCTNAGC	1 cut(s)	702
Bsp19I	CCATGG	1 cut(s)	981
BspACI	CCGC	2 cut(s)	255, 1061
BspANI	GGCC	3 cut(s)	65, 276, 1209
BspCNI	CTCAG	4 cut(s)	226, 501, 694, 1144
BspEI	TCCGGA	1 cut(s)	856
BspLI	GGNNCC	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	542
BspMI	ACCTGC	1 cut(s)	1099
BspPI	GGATC	2 cut(s)	203, 972
BsrDI	GCAATG	2 cut(s)	216, 807
BsrFI	RCCGGY	1 cut(s)	362
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	438, 471
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	790, 981
BssMI	GATC	9 cut(s)	55, 195, 445, 577, 629, 977, 1181, 1198, 1221
BssSI	CACGAG	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	981
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	9 cut(s)	217, 284, 416, 562, 670, 842, 941, 1258, 1268
Bst6I	CTCTTC	4 cut(s)	93, 459, 1287, 1389
BstAUI	TGTACA	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	6 cut(s)	133, 245, 398, 1008, 1126, 1195
BstDEI	CTNAG	5 cut(s)	234, 509, 598, 702, 1152
BstDSI	CCRYGG	1 cut(s)	981
BstF5I	GGATG	7 cut(s)	58, 505, 777, 784, 931, 1214, 1249
BstKTI	GATC	9 cut(s)	58, 198, 448, 580, 632, 980, 1184, 1201, 1224
BstMAI	GTCTC	1 cut(s)	1279
BstMBI	GATC	9 cut(s)	55, 195, 445, 577, 629, 977, 1181, 1198, 1221
BstMWI	GCNNNNNNNGC	3 cut(s)	372, 1016, 1134
BstNI	CCWGG	1 cut(s)	792
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	790
BstSFI	CTRYAG	4 cut(s)	538, 561, 868, 1171
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	998
BstV2I	GAAGAC	1 cut(s)	789
BsuI	GTATCC	1 cut(s)	1246
BsuRI	GGCC	3 cut(s)	65, 276, 1209
BtgI	CCRYGG	1 cut(s)	981
BtsCI	GGATG	7 cut(s)	58, 505, 777, 784, 931, 1214, 1249
BtsI	GCAGTG	1 cut(s)	547
BtsIMutI	CAGTG	3 cut(s)	547, 744, 946
BveI	ACCTGC	1 cut(s)	1099
Cac8I	GCNNGC	6 cut(s)	133, 245, 398, 1008, 1126, 1195
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	275, 1208
CseI	GACGC	1 cut(s)	1292
Csp6I	GTAC	3 cut(s)	43, 172, 305
CviAII	CATG	9 cut(s)	32, 46, 169, 244, 272, 462, 982, 1121, 1333
CviQI	GTAC	3 cut(s)	43, 172, 305
DdeI	CTNAG	5 cut(s)	234, 509, 598, 702, 1152
DpnI	GATC	9 cut(s)	57, 197, 447, 579, 631, 979, 1183, 1200, 1223
DpnII	GATC	9 cut(s)	55, 195, 445, 577, 629, 977, 1181, 1198, 1221
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	4 cut(s)	93, 459, 1287, 1389
EarI	CTCTTC	4 cut(s)	93, 459, 1287, 1389
Eco130I	CCWWGG	1 cut(s)	981
Eco32I	GATATC	1 cut(s)	879
EcoO109I	RGGNCCY	1 cut(s)	1208
EcoRII	CCWGG	1 cut(s)	790
EcoRV	GATATC	1 cut(s)	879
EcoT14I	CCWWGG	1 cut(s)	981
ErhI	CCWWGG	1 cut(s)	981
FaeI	CATG	9 cut(s)	35, 49, 172, 247, 275, 465, 985, 1124, 1336
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	9 cut(s)	31, 45, 168, 243, 271, 461, 981, 1120, 1332
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	1 cut(s)	987
FokI	GGATG	7 cut(s)	65, 512, 784, 791, 938, 1201, 1256
Fsp4HI	GCNGC	1 cut(s)	987
FspBI	CTAG	3 cut(s)	156, 627, 998
GluI	GCNGC	1 cut(s)	987
GsaI	CCCAGC	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	65, 276, 1209
HapII	CCGG	4 cut(s)	363, 390, 776, 857
HgaI	GACGC	1 cut(s)	1292
Hin1II	CATG	9 cut(s)	35, 49, 172, 247, 275, 465, 985, 1124, 1336
HincII	GTYRAC	1 cut(s)	1318
HindII	GTYRAC	1 cut(s)	1318
HindIII	AAGCTT	1 cut(s)	1340
HinfI	GANTC	4 cut(s)	605, 1115, 1148, 1366
HpaII	CCGG	4 cut(s)	363, 390, 776, 857
HphI	GGTGA	2 cut(s)	587, 598
Hpy166II	GTNNAC	3 cut(s)	174, 305, 1318
Hpy188I	TCNGA	7 cut(s)	72, 85, 334, 1114, 1153, 1219, 1371
Hpy188III	TCNNGA	5 cut(s)	203, 425, 633, 857, 1078
Hpy8I	GTNNAC	3 cut(s)	174, 305, 1318
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	140, 1243, 1378
HpyCH4III	ACNGT	9 cut(s)	217, 284, 416, 562, 670, 842, 941, 1258, 1268
HpyCH4IV	ACGT	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	372, 1016, 1134
HpyF3I	CTNAG	5 cut(s)	234, 509, 598, 702, 1152
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	9 cut(s)	35, 49, 172, 247, 275, 465, 985, 1124, 1336
Kpn2I	TCCGGA	1 cut(s)	856
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	9 cut(s)	55, 195, 445, 577, 629, 977, 1181, 1198, 1221
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	1 cut(s)	998
LweI	GCATC	5 cut(s)	196, 762, 916, 971, 1223
MaeI	CTAG	3 cut(s)	156, 627, 998
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	4 cut(s)	284, 308, 422, 556
MalI	GATC	9 cut(s)	57, 197, 447, 579, 631, 979, 1183, 1200, 1223
MboI	GATC	9 cut(s)	55, 195, 445, 577, 629, 977, 1181, 1198, 1221
MboII	GAAGA	9 cut(s)	110, 198, 446, 515, 794, 886, 1089, 1304, 1406
MhlI	GDGCHC	2 cut(s)	133, 402
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	8 cut(s)	26, 313, 345, 708, 893, 992, 1047, 1349
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	2 cut(s)	1142, 1375
MmeI	TCCRAC	2 cut(s)	123, 1349
Mox20I	TGGCCA	1 cut(s)	65
MroI	TCCGGA	1 cut(s)	856
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	5 cut(s)	480, 567, 932, 1103, 1308
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	4 cut(s)	363, 390, 776, 857
MspR9I	CCNGG	1 cut(s)	792
MvaI	CCWGG	1 cut(s)	792
MwoI	GCNNNNNNNGC	3 cut(s)	372, 1016, 1134
NcoI	CCATGG	1 cut(s)	981
NdeII	GATC	9 cut(s)	55, 195, 445, 577, 629, 977, 1181, 1198, 1221
NlaIII	CATG	9 cut(s)	35, 49, 172, 247, 275, 465, 985, 1124, 1336
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	3 cut(s)	284, 308, 422
NspI	RCATGY	1 cut(s)	247
PaeI	GCATGC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	605, 1115
PkrI	GCNGC	1 cut(s)	988
PleI	GAGTC	2 cut(s)	1142, 1374
PpsI	GAGTC	2 cut(s)	1142, 1374
Ppu21I	YACGTR	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	790
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	790
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	275, 1208
PstI	CTGCAG	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	3 cut(s)	44, 173, 306
RsaNI	GTAC	3 cut(s)	43, 172, 305
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	5 cut(s)	480, 567, 932, 1103, 1308
SatI	GCNGC	1 cut(s)	987
Sau3AI	GATC	9 cut(s)	55, 195, 445, 577, 629, 977, 1181, 1198, 1221
Sau96I	GGNCC	2 cut(s)	275, 1208
SchI	GAGTC	2 cut(s)	1142, 1375
ScrFI	CCNGG	1 cut(s)	792
SduI	GDGCHC	2 cut(s)	133, 402
SfaNI	GCATC	5 cut(s)	196, 762, 916, 971, 1223
SfcI	CTRYAG	4 cut(s)	538, 561, 868, 1171
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	850
SmoI	CTYRAG	1 cut(s)	850
SpeI	ACTAGT	1 cut(s)	997
SphI	GCATGC	1 cut(s)	247
Sse9I	AATT	8 cut(s)	26, 313, 345, 708, 893, 992, 1047, 1349
SsiI	CCGC	2 cut(s)	255, 1061
SspMI	CTAG	3 cut(s)	156, 627, 998
StyD4I	CCNGG	1 cut(s)	790
StyI	CCWWGG	1 cut(s)	981
TaaI	ACNGT	9 cut(s)	217, 284, 416, 562, 670, 842, 941, 1258, 1268
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	4 cut(s)	516, 1043, 1184, 1382
TasI	AATT	8 cut(s)	26, 313, 345, 708, 893, 992, 1047, 1349
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	605, 1115
Tru1I	TTAA	5 cut(s)	480, 567, 932, 1103, 1308
Tru9I	TTAA	5 cut(s)	480, 567, 932, 1103, 1308
TscAI	CASTG	3 cut(s)	547, 744, 946
TseFI	GTSAC	3 cut(s)	284, 308, 422
TseI	GCWGC	1 cut(s)	986
Tsp45I	GTSAC	3 cut(s)	284, 308, 422
TspDTI	ATGAA	5 cut(s)	516, 728, 795, 906, 1089
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	3 cut(s)	547, 744, 946
XapI	RAATTY	2 cut(s)	345, 893
XceI	RCATGY	1 cut(s)	247
XspI	CTAG	3 cut(s)	156, 627, 998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.