Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009446

Physical Location & Seq

Genomic Coordinates Reverse (-)

26488551 .. 26491313

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G285600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGCACATGCCAATAAACACCATCCGACCATCGCCTTTCAATTATCTTTCTCTTCTTGCCTCTTCACCCATTTCTGCCATTTGGAGAGACATGGGAGCTTGTTGTTCCAAGGAAGCGTTGTATGGAGGAGGGTACATAGAGGATGATCGTACGAACAATCGGCATTTTAACGAATCTGAGGGTAATGATGAGGAGGACAATGTAAGGCACGGGGACGACGGGGCCCGCATACGGTTGCAAGGGTGTTCTAGGTTCACATCAATGTACACCCAGCAAGGAAGAAAAGGGATCAATCAAGATGCCATGACAATTTGGGAGGACTTTACTGAGAAAGGCATGTACTTCTGTGGTGTGTTTGATGGTCATGGCCCTGAAGGTCACAAAGTTGCAAGATGTGTACGTGACAATTTGCCCTCGAAGCTCTCCCAAGTGATCAAAATTTACCGACTTAACACCGGAATATTCAGTGACATTGATGTTGGAAGTGAGCTCTATGAAAATGTTGGTCACAGACACAAGAAGAAAGCCAGTCTGGATATGCCCCTTTCTTCATGGGAAGCCAGTTATGTTAAATCATTCAAGGAAATGGACGAAGAACTTAGCCTCGATAACACCATCGATAGCTTCTGCAGTGGATCAACAGCTGTAACTGTAGTTAAGCAGGGTGATCACTTGGTAATTGCCAACTTGGGGGATTCTCGTGCCGTTCTTGGCACTAGATCAGGAGAGAAAAACCAGATATGTTCTGTCCAACTCACAGTTGACTTGAAACCGGATACTCCAGGTGAAGCTGAGAGAATAAAGAATTGCAAAGGCAGAATTTTATCAGTGGACGAAGAACCAGAAGTGTATAGATTATGGATGCCCGATGAAGATTGCCCTGGTCTAGCAATGTCAAGGGCTTTTGGAGATTTCTGTGTCAAAGATTGTGGCCTAATCTCAATCCCTGAAGTTTTCTATAGAAGGATCTCAAGCAGTGATGAATTTGTGGTCTTGGCAACTGATGGGGTGTGGGATGCATTGACAAACACTGATGTGGTAAAGATAGTTGCTTCAGCAAAGAGGCGATCCATTGCAGCCGAATTGGTGGTTAAGCGTGCTGTTAGAGCATGGAAAAGAAAGTTCCCAGAATCGAAAATCGACGACTGCGCAGTCATATGCTTGTACCTGAAAGACCAACCATCATTAACACAAACCGCATCTAACTTGAGCCGTGGAGGCAAACCAAATGATACAGAGCTTTCATTGTCTTACTATAGCACAAGATCCAACATTGTAAGTGATGTGGGATGCCCTGCATCTGAGATCAGTAGCAAGATCACAGAAGACTCAAAGGAAGAGTGGAATGCGCTTGATGGAGTTGAAAGAGTAAATACCATGTTGAAGCTTCCTCGGTTTTCTAATGGTTTGAATCGGCGGAAATCACAAAAGGATGATGAAGATGGTGAAAATCAGGAATTAGTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

490

Amino Acids

54.57

Weight (kDa)

5.3

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01700 AT5G01700
fragaria_vesca	FvH4_6g10560
malus_domestica	MD04G1167100.v1.1 MD09G1179600.v1.1 MD12G1180700.v1.1
prunus_persica	Prupe.6G285600_v2.0.a1 Prupe.6G285600_v2.0.a1
pyrus_communis	pycom12g17030
rosa_chinensis	RchiOBHm_Chr3g0461551
rosa_laevigata	RLG00000024922
rosa_multiflora	Rmu_co8091094.1_g000001 Rmu_sc0014309.1_g000005 Rmu_sc0014309.1_g000006
rosa_roxburghii	Rroxscaffold_6G00418170 Rroxscaffold_6G00418530
rosa_rugosa	Rorug03G0051700
rosa_samantha	Rh3AG109800 Rh3BG113200 Rh3CG115000 Rh3DG114800
rosa_wichuraiana	Rw3G009290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1151
Acc16I	TGCGCA	1 cut(s)	1150
AciI	CCGC	3 cut(s)	226, 1197, 1417
AclWI	GGATC	5 cut(s)	296, 643, 974, 1062, 1260
AcsI	RAATTY	3 cut(s)	438, 819, 983
AcuI	CTGAAG	3 cut(s)	393, 969, 1038
AfaI	GTAC	6 cut(s)	134, 151, 266, 341, 399, 1166
AfiI	CCNNNNNNNGG	2 cut(s)	231, 690
AgsI	TTSAA	7 cut(s)	40, 580, 769, 1364, 1384, 1411, 1466
AjnI	CCWGG	2 cut(s)	781, 880
AleI	CACNNNNGTG	1 cut(s)	1034
AluBI	AGCT	8 cut(s)	98, 421, 490, 624, 644, 791, 1240, 1387
AluI	AGCT	8 cut(s)	98, 421, 490, 624, 644, 791, 1240, 1387
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	5 cut(s)	296, 643, 974, 1062, 1260
AoxI	GGCC	3 cut(s)	222, 367, 931
ApaI	GGGCCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	1076
ApoI	RAATTY	3 cut(s)	438, 819, 983
Asp700I	GAANNNNTTC	1 cut(s)	1461
AspLEI	GCGC	2 cut(s)	1151, 1351
AspS9I	GGNCC	3 cut(s)	222, 223, 368
AsuHPI	GGTGA	4 cut(s)	57, 677, 797, 1457
BaeGI	GKGCMC	1 cut(s)	226
BanII	GRGCYC	2 cut(s)	226, 492
BauI	CACGAG	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	1332
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	1088
BccI	CCATC	8 cut(s)	29, 37, 353, 623, 998, 1189, 1349, 1436
BceAI	ACGGC	2 cut(s)	689, 1197
BciT130I	CCWGG	2 cut(s)	783, 882
BciVI	GTATCC	1 cut(s)	769
BclI	TGATCA	2 cut(s)	432, 667
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	3 cut(s)	249, 717, 887
BfmI	CTRYAG	4 cut(s)	628, 651, 958, 1255
BfuI	GTATCC	1 cut(s)	769
BglI	GCCNNNNNGGC	1 cut(s)	1218
BisI	GCNGC	1 cut(s)	1077
BlsI	GCNGC	1 cut(s)	1078
Bme1390I	CCNGG	2 cut(s)	783, 882
BmgT120I	GGNCC	3 cut(s)	222, 223, 368
BmiI	GGNNCC	2 cut(s)	223, 224
BmrFI	CCNGG	2 cut(s)	783, 882
BmsI	GCATC	6 cut(s)	289, 852, 1006, 1208, 1280, 1307
BpiI	GAAGAC	1 cut(s)	1332
BpmI	CTGGAG	1 cut(s)	765
BpuEI	CTTGAG	2 cut(s)	955, 1228
Bsa29I	ATCGAT	1 cut(s)	618
BsaAI	YACGTR	1 cut(s)	401
BsaJI	CCNNGG	4 cut(s)	108, 880, 1213, 1391
BsaWI	WCCGGW	2 cut(s)	455, 772
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 690
Bse1I	ACTGG	2 cut(s)	528, 561
Bse3DI	GCAATG	2 cut(s)	897, 1071
BseBI	CCWGG	2 cut(s)	783, 882
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	4 cut(s)	108, 880, 1213, 1391
BseGI	GGATG	6 cut(s)	21, 148, 867, 1021, 1295, 1438
BseLI	CCNNNNNNNGG	2 cut(s)	231, 690
BseMI	GCAATG	2 cut(s)	897, 1071
BseMII	CTCAG	4 cut(s)	168, 318, 783, 1293
BseNI	ACTGG	2 cut(s)	528, 561
BseRI	GAGGAG	2 cut(s)	141, 206
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	1088
BseYI	CCCAGC	1 cut(s)	270
BshFI	GGCC	3 cut(s)	224, 369, 933
BshVI	ATCGAT	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	492
BsiSI	CCGG	2 cut(s)	456, 773
BsiWI	CGTACG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	231, 690
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	1351
BsnI	GGCC	3 cut(s)	224, 369, 933
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	226, 492
Bsp1407I	TGTACA	1 cut(s)	264
BspACI	CCGC	3 cut(s)	226, 1197, 1417
BspANI	GGCC	3 cut(s)	224, 369, 933
BspCNI	CTCAG	4 cut(s)	169, 319, 784, 1294
BspDI	ATCGAT	1 cut(s)	618
BspLI	GGNNCC	2 cut(s)	223, 224
BspMAI	CTGCAG	1 cut(s)	632
BspPI	GGATC	5 cut(s)	296, 643, 974, 1062, 1260
BsrDI	GCAATG	2 cut(s)	897, 1071
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	528, 561
BssECI	CCNNGG	4 cut(s)	108, 880, 1213, 1391
BssSI	CACGAG	1 cut(s)	699
BssT1I	CCWWGG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	699
Bst2UI	CCWGG	2 cut(s)	783, 882
Bst4CI	ACNGT	3 cut(s)	234, 652, 760
Bst6I	CTCTTC	3 cut(s)	57, 67, 1332
BstAUI	TGTACA	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	226, 1098
BstDEI	CTNAG	5 cut(s)	177, 327, 599, 792, 1302
BstDSI	CCRYGG	1 cut(s)	1213
BstF5I	GGATG	6 cut(s)	21, 148, 867, 1021, 1295, 1438
BstHHI	GCGC	2 cut(s)	1151, 1351
BstMAI	GTCTC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	3 cut(s)	418, 1106, 1218
BstNI	CCWGG	2 cut(s)	783, 882
BstNSI	RCATGY	2 cut(s)	10, 340
BstSCI	CCNGG	2 cut(s)	781, 880
BstSFI	CTRYAG	4 cut(s)	628, 651, 958, 1255
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	1088
BstV2I	GAAGAC	1 cut(s)	1332
BstX2I	RGATCY	2 cut(s)	966, 1265
BstYI	RGATCY	2 cut(s)	966, 1265
Bsu15I	ATCGAT	1 cut(s)	618
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	3 cut(s)	224, 369, 933
BsuTUI	ATCGAT	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	1213
BtgZI	GCGATG	1 cut(s)	15
BtsCI	GGATG	6 cut(s)	21, 148, 867, 1021, 1295, 1438
BtsI	GCAGTG	2 cut(s)	637, 982
BtsIMutI	CAGTG	5 cut(s)	472, 637, 834, 982, 1029
Cac8I	GCNNGC	2 cut(s)	226, 1098
CfoI	GCGC	2 cut(s)	1151, 1351
Cfr13I	GGNCC	3 cut(s)	222, 223, 368
ClaI	ATCGAT	1 cut(s)	618
Csp6I	GTAC	6 cut(s)	133, 150, 265, 340, 398, 1165
CspCI	CAANNNNNGTGG	2 cut(s)	910, 945
CviAII	CATG	8 cut(s)	7, 91, 304, 337, 365, 552, 1110, 1378
CviQI	GTAC	6 cut(s)	133, 150, 265, 340, 398, 1165
DdeI	CTNAG	5 cut(s)	177, 327, 599, 792, 1302
DrdI	GACNNNNNNGTC	1 cut(s)	1151
DseDI	GACNNNNNNGTC	1 cut(s)	1151
Eam1104I	CTCTTC	3 cut(s)	57, 67, 1332
EarI	CTCTTC	3 cut(s)	57, 67, 1332
EciI	GGCGGA	1 cut(s)	1432
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	2 cut(s)	226, 492
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	3 cut(s)	393, 969, 1038
EcoICRI	GAGCTC	1 cut(s)	490
EcoO109I	RGGNCCY	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	781, 880
EcoT14I	CCWWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	1021
EcoT38I	GRGCYC	2 cut(s)	226, 492
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	8 cut(s)	10, 94, 307, 340, 368, 555, 1113, 1381
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	8 cut(s)	6, 90, 303, 336, 364, 551, 1109, 1377
FauI	CCCGC	1 cut(s)	233
FauNDI	CATATG	1 cut(s)	1157
FbaI	TGATCA	2 cut(s)	432, 667
Fnu4HI	GCNGC	1 cut(s)	1077
FokI	GGATG	6 cut(s)	8, 155, 874, 1028, 1302, 1445
FriOI	GRGCYC	2 cut(s)	226, 492
Fsp4HI	GCNGC	1 cut(s)	1077
FspBI	CTAG	3 cut(s)	249, 717, 887
FspI	TGCGCA	1 cut(s)	1150
GlaI	GCGC	2 cut(s)	1150, 1350
GluI	GCNGC	1 cut(s)	1077
GsaI	CCCAGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	3 cut(s)	224, 369, 933
HapII	CCGG	2 cut(s)	456, 773
HhaI	GCGC	2 cut(s)	1151, 1351
Hin1II	CATG	8 cut(s)	10, 94, 307, 340, 368, 555, 1113, 1381
Hin6I	GCGC	2 cut(s)	1149, 1349
HinP1I	GCGC	2 cut(s)	1149, 1349
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	1385
HinfI	GANTC	5 cut(s)	173, 695, 1130, 1328, 1411
HpaII	CCGG	2 cut(s)	456, 773
HphI	GGTGA	4 cut(s)	57, 677, 797, 1457
Hpy166II	GTNNAC	5 cut(s)	255, 267, 398, 763, 832
Hpy188I	TCNGA	3 cut(s)	26, 178, 1303
Hpy188III	TCNNGA	4 cut(s)	296, 533, 723, 1454
Hpy8I	GTNNAC	5 cut(s)	255, 267, 398, 763, 832
Hpy99I	CGWCG	2 cut(s)	221, 1145
HpyAV	CCTTC	2 cut(s)	368, 957
HpyCH4III	ACNGT	3 cut(s)	234, 652, 760
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	8 cut(s)	4, 238, 389, 630, 810, 1019, 1076, 1298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	418, 1106, 1218
HpyF3I	CTNAG	5 cut(s)	177, 327, 599, 792, 1302
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	8 cut(s)	10, 94, 307, 340, 368, 555, 1113, 1381
HspAI	GCGC	2 cut(s)	1149, 1349
Ksp22I	TGATCA	2 cut(s)	432, 667
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	1 cut(s)	1088
LweI	GCATC	6 cut(s)	289, 852, 1006, 1208, 1280, 1307
MaeI	CTAG	3 cut(s)	249, 717, 887
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	5 cut(s)	377, 401, 467, 506, 646
MflI	RGATCY	2 cut(s)	966, 1265
MhlI	GDGCHC	2 cut(s)	226, 492
MlyI	GAGTC	1 cut(s)	1322
MmeI	TCCRAC	4 cut(s)	49, 460, 775, 1293
Mph1103I	ATGCAT	1 cut(s)	1021
MroXI	GAANNNNTTC	1 cut(s)	1461
MseI	TTAA	6 cut(s)	168, 450, 570, 657, 1092, 1187
MslI	CAYNNNNRTG	2 cut(s)	260, 1034
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	2 cut(s)	456, 773
MspR9I	CCNGG	2 cut(s)	783, 882
Mva1269I	GAATGC	1 cut(s)	1351
MvaI	CCWGG	2 cut(s)	783, 882
MwoI	GCNNNNNNNGC	3 cut(s)	418, 1106, 1218
NdeI	CATATG	1 cut(s)	1157
NlaIII	CATG	8 cut(s)	10, 94, 307, 340, 368, 555, 1113, 1381
NlaIV	GGNNCC	2 cut(s)	223, 224
NmuCI	GTSAC	4 cut(s)	377, 401, 467, 506
NsbI	TGCGCA	1 cut(s)	1150
NsiI	ATGCAT	1 cut(s)	1021
NspI	RCATGY	2 cut(s)	10, 340
OliI	CACNNNNGTG	1 cut(s)	1034
PctI	GAATGC	1 cut(s)	1351
PdmI	GAANNNNTTC	1 cut(s)	1461
PfeI	GAWTC	4 cut(s)	173, 695, 1130, 1411
Pfl23II	CGTACG	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	1078
PleI	GAGTC	1 cut(s)	1322
PpsI	GAGTC	1 cut(s)	1322
Ppu21I	YACGTR	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	781, 880
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	2 cut(s)	781, 880
PspLI	CGTACG	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	223, 224
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	3 cut(s)	222, 223, 368
PstI	CTGCAG	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	966, 1265
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	6 cut(s)	134, 151, 266, 341, 399, 1166
RsaNI	GTAC	6 cut(s)	133, 150, 265, 340, 398, 1165
RseI	CAYNNNNRTG	2 cut(s)	260, 1034
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	6 cut(s)	168, 450, 570, 657, 1092, 1187
SatI	GCNGC	1 cut(s)	1077
Sau96I	GGNCC	3 cut(s)	222, 223, 368
SchI	GAGTC	1 cut(s)	1322
ScrFI	CCNGG	2 cut(s)	783, 882
SduI	GDGCHC	2 cut(s)	226, 492
SfaNI	GCATC	6 cut(s)	289, 852, 1006, 1208, 1280, 1307
SfcI	CTRYAG	4 cut(s)	628, 651, 958, 1255
SmiMI	CAYNNNNRTG	2 cut(s)	260, 1034
SmlI	CTYRAG	2 cut(s)	970, 1207
SmoI	CTYRAG	2 cut(s)	970, 1207
SsiI	CCGC	3 cut(s)	226, 1197, 1417
SspI	AATATT	1 cut(s)	462
SspMI	CTAG	3 cut(s)	249, 717, 887
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	781, 880
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	3 cut(s)	234, 652, 760
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	5 cut(s)	416, 606, 618, 1133, 1140
TatI	WGTACW	2 cut(s)	264, 339
TfiI	GAWTC	4 cut(s)	173, 695, 1130, 1411
Tru1I	TTAA	6 cut(s)	168, 450, 570, 657, 1092, 1187
Tru9I	TTAA	6 cut(s)	168, 450, 570, 657, 1092, 1187
TscAI	CASTG	5 cut(s)	472, 637, 834, 982, 1036
TseFI	GTSAC	4 cut(s)	377, 401, 467, 506
TseI	GCWGC	1 cut(s)	1076
Tsp45I	GTSAC	4 cut(s)	377, 401, 467, 506
TspDTI	ATGAA	6 cut(s)	510, 540, 885, 996, 1233, 1452
TspRI	CASTG	5 cut(s)	472, 637, 834, 982, 1036
XapI	RAATTY	3 cut(s)	438, 819, 983
XceI	RCATGY	2 cut(s)	10, 340
XmnI	GAANNNNTTC	1 cut(s)	1461
XspI	CTAG	3 cut(s)	249, 717, 887
Zsp2I	ATGCAT	1 cut(s)	1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.