Rorug03G0051700

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009446
Physical Location & Seq
Reverse (-)
4028735 .. 4032666
3932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0051700.1

Sequence Viewer

Length: 906 bp
ATGATGGCTTTCAGAAGCTCAAACACGATTCGTGCTCTCTTGCGTGCGACCCAGATTCAAGAATCTTCGTATCTTCTTGGAAGCTCAAGAAGCTACGGAACTGGTATTTCAAATGTGGCTGAACTTAATAGCCGGAACATGTACTCAAGCTTATATAAGGGCAATAGAGCACTTCCTTGGCCTTCTAGAAATGCTATGACCCTGCGTTCTGCAATGGCTGTCGAGTTGCCAATCTTCTTGAATGATAAAAGGTTGCTATCCACACAAGTAAAAGCACCTGCCCAAGCAAGACAAATGGGAGCACTTAGAGTTTCCATGACAAGCCCAGGATTTATCTATGAGCCTTATGCACCTCGTGAAAAAGTTCCATTTTTCCGGAGATGGTTCACTAGAAGTGGCTGGAGAAGAACAAAAGAAGATATAATTTTAGAGCTTAAAAGTGCATATGCTATTAATAAATTAAGAAAATCGGGATATTCGAAGAATTTATTCTACAAAGAAGCAATCAATGTATACAAGGAGATAAATACTCTATTGGCAACTGGAGACAAAAACACTTTAAGGAAAGCAGTTACTGAGAAAATGTACTCTGAACTAAAGAACGAAATAAAACAGAGAGAATCCATATGGAGTAAGGTTTATTGGGAAATGGTGGAGCCAATTGTAAAAATACGCACCTTGCGAGCACGACTGATTGGTGTTGATCCAAAAGATCTCGAAAAGGTGTTTATACAACTTACACTTGAGTTTCTGTCAAAGCAGAAGTTCGAAGCATATGACTCAAAGGGTTCTGTTGTTGCTGGAGATAAATCTAAGGAGGTTCTTGTCCGTGATATCTGGGTATTTGAAAAGTCTCTCTTCCATCCTAAATCTTTCTGGCGTCTTTGTGGGAGGATTACTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

301

Amino Acids

34.88

Weight (kDa)

10.12

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim44 PF04280 147 - 297 2.1e-22 Tim44-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 513
AccIII TCCGGA 1 cut(s) 375
AclWI GGATC 1 cut(s) 698
AcsI RAATTY 1 cut(s) 484
AcyI GRCGYC 1 cut(s) 880
AdeI CACNNNGTG 1 cut(s) 356
AfaI GTAC 2 cut(s) 143, 587
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 4 cut(s) 59, 111, 241, 848
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 5 cut(s) 18, 84, 93, 150, 433
AluI AGCT 5 cut(s) 18, 84, 93, 150, 433
Alw21I GWGCWC 4 cut(s) 37, 172, 304, 688
Alw26I GTCTC 2 cut(s) 540, 858
AlwI GGATC 1 cut(s) 698
AlwNI CAGNNNCTG 1 cut(s) 575
Aor13HI TCCGGA 1 cut(s) 375
AoxI GGCC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 484
AseI ATTAAT 1 cut(s) 453
Asp700I GAANNNNTTC 2 cut(s) 363, 488
AsuII TTCGAA 2 cut(s) 479, 768
BauI CACGAG 1 cut(s) 354
Bbv12I GWGCWC 4 cut(s) 37, 172, 304, 688
BccI CCATC 2 cut(s) 375, 870
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 540, 858
BfaI CTAG 2 cut(s) 186, 390
BfuAI ACCTGC 1 cut(s) 286
BglII AGATCT 1 cut(s) 712
Bme1390I CCNGG 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 1 cut(s) 327
BplI GAGNNNNNCTC 1 cut(s) 883
BpmI CTGGAG 3 cut(s) 421, 564, 822
Bpu14I TTCGAA 2 cut(s) 479, 768
BpuEI CTTGAG 3 cut(s) 70, 130, 764
BsaHI GRCGYC 1 cut(s) 880
BsaJI CCNNGG 2 cut(s) 176, 325
BsaWI WCCGGW 1 cut(s) 375
Bse1I ACTGG 2 cut(s) 106, 547
Bse3DI GCAATG 1 cut(s) 219
BseAI TCCGGA 1 cut(s) 375
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 176, 325
BseGI GGATG 1 cut(s) 862
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 2 cut(s) 106, 547
BshFI GGCC 1 cut(s) 181
BsiHKAI GWGCWC 4 cut(s) 37, 172, 304, 688
BsiSI CCGG 2 cut(s) 133, 376
BsmAI GTCTC 2 cut(s) 540, 858
BsnI GGCC 1 cut(s) 181
Bsp119I TTCGAA 2 cut(s) 479, 768
Bsp1286I GDGCHC 4 cut(s) 37, 172, 304, 688
Bsp13I TCCGGA 1 cut(s) 375
Bsp143I GATC 2 cut(s) 703, 712
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 568
BspEI TCCGGA 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 657
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 1 cut(s) 698
BspT104I TTCGAA 2 cut(s) 479, 768
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 2 cut(s) 106, 547
BssECI CCNNGG 2 cut(s) 176, 325
BssMI GATC 2 cut(s) 703, 712
BssNAI GTATAC 1 cut(s) 514
BssNI GRCGYC 1 cut(s) 880
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 176
Bst1107I GTATAC 1 cut(s) 514
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 327
Bst6I CTCTTC 1 cut(s) 863
BstACI GRCGYC 1 cut(s) 880
BstBI TTCGAA 2 cut(s) 479, 768
BstC8I GCNNGC 2 cut(s) 45, 684
BstDEI CTNAG 3 cut(s) 305, 576, 813
BstF5I GGATG 1 cut(s) 862
BstKTI GATC 2 cut(s) 706, 715
BstMAI GTCTC 2 cut(s) 540, 858
BstMBI GATC 2 cut(s) 703, 712
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 712
BstYI RGATCY 1 cut(s) 712
BstZ17I GTATAC 1 cut(s) 514
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 862
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 45, 684
CaiI CAGNNNCTG 1 cut(s) 575
CseI GACGC 1 cut(s) 869
Csp6I GTAC 2 cut(s) 142, 586
CviAII CATG 2 cut(s) 139, 316
CviQI GTAC 2 cut(s) 142, 586
DdeI CTNAG 3 cut(s) 305, 576, 813
DpnI GATC 2 cut(s) 705, 714
DpnII GATC 2 cut(s) 703, 712
DraIII CACNNNGTG 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 863
EarI CTCTTC 1 cut(s) 863
Eco130I CCWWGG 1 cut(s) 176
Eco32I GATATC 1 cut(s) 835
EcoRII CCWGG 1 cut(s) 325
EcoRV GATATC 1 cut(s) 835
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 2 cut(s) 142, 319
FalI AAGNNNNNCTT 2 cut(s) 842, 874
FatI CATG 2 cut(s) 138, 315
FauNDI CATATG 3 cut(s) 445, 626, 775
FblI GTMKAC 1 cut(s) 513
FokI GGATG 1 cut(s) 849
FspBI CTAG 2 cut(s) 186, 390
GsuI CTGGAG 3 cut(s) 421, 564, 822
HaeIII GGCC 1 cut(s) 181
HapII CCGG 2 cut(s) 133, 376
HgaI GACGC 1 cut(s) 869
Hin1I GRCGYC 1 cut(s) 880
Hin1II CATG 2 cut(s) 142, 319
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 5 cut(s) 28, 55, 62, 620, 779
HpaII CCGG 2 cut(s) 133, 376
Hpy166II GTNNAC 2 cut(s) 387, 514
Hpy188I TCNGA 2 cut(s) 14, 592
Hpy188III TCNNGA 8 cut(s) 59, 87, 186, 238, 356, 376, 471, 716
Hpy8I GTNNAC 2 cut(s) 387, 514
HpyAV CCTTC 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 212, 350, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 3 cut(s) 305, 576, 813
Hsp92I GRCGYC 1 cut(s) 880
Hsp92II CATG 2 cut(s) 142, 319
Kpn2I TCCGGA 1 cut(s) 375
Kzo9I GATC 2 cut(s) 703, 712
LmnI GCTCC 2 cut(s) 299, 655
MaeI CTAG 2 cut(s) 186, 390
MaeIII GTNAC 1 cut(s) 571
MalI GATC 2 cut(s) 705, 714
MboI GATC 2 cut(s) 703, 712
MboII GAAGA 7 cut(s) 57, 65, 226, 417, 428, 493, 850
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 4 cut(s) 37, 172, 304, 688
MluCI AATT 4 cut(s) 423, 458, 484, 660
MlyI GAGTC 1 cut(s) 773
MnlI CCTC 3 cut(s) 363, 811, 885
MroI TCCGGA 1 cut(s) 375
MroXI GAANNNNTTC 2 cut(s) 363, 488
MseI TTAA 5 cut(s) 126, 435, 453, 461, 560
MspI CCGG 2 cut(s) 133, 376
MspR9I CCNGG 1 cut(s) 327
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeI CATATG 3 cut(s) 445, 626, 775
NdeII GATC 2 cut(s) 703, 712
NlaIII CATG 2 cut(s) 142, 319
NlaIV GGNNCC 1 cut(s) 657
NspI RCATGY 1 cut(s) 142
NspV TTCGAA 2 cut(s) 479, 768
PaqCI CACCTGC 1 cut(s) 286
PciI ACATGT 1 cut(s) 138
PcsI WCGNNNNNNNCGW 2 cut(s) 476, 679
PdmI GAANNNNTTC 2 cut(s) 363, 488
PfeI GAWTC 4 cut(s) 28, 55, 62, 620
PleI GAGTC 1 cut(s) 773
PpsI GAGTC 1 cut(s) 773
PscI ACATGT 1 cut(s) 138
PshBI ATTAAT 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 657
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 1 cut(s) 712
RsaI GTAC 2 cut(s) 143, 587
RsaNI GTAC 2 cut(s) 142, 586
SaqAI TTAA 5 cut(s) 126, 435, 453, 461, 560
Sau3AI GATC 2 cut(s) 703, 712
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 4 cut(s) 37, 172, 304, 688
SfuI TTCGAA 2 cut(s) 479, 768
SmlI CTYRAG 3 cut(s) 85, 145, 743
SmoI CTYRAG 3 cut(s) 85, 145, 743
Sse9I AATT 4 cut(s) 423, 458, 484, 660
SspMI CTAG 2 cut(s) 186, 390
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 176
TaqI TCGA 4 cut(s) 222, 479, 717, 768
TasI AATT 4 cut(s) 423, 458, 484, 660
TatI WGTACW 2 cut(s) 141, 585
TfiI GAWTC 4 cut(s) 28, 55, 62, 620
Tru1I TTAA 5 cut(s) 126, 435, 453, 461, 560
Tru9I TTAA 5 cut(s) 126, 435, 453, 461, 560
TspGWI ACGGA 2 cut(s) 111, 818
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 1 cut(s) 484
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 513
XmnI GAANNNNTTC 2 cut(s) 363, 488
XspI CTAG 2 cut(s) 186, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.