MD09G1184100.v1.1

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010142
Physical Location & Seq
Reverse (-)
15920103 .. 15926309
6207 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1184100.v1.1.491

Sequence Viewer

Length: 1890 bp
ATGGCGGAAAACGGCCCATCGTCGTCCCCAAACCCCCTCCAACCCAGTATTGACCCAGCAGCAGCAGCATCAGCCTCAAACATTATGATCACAGAAAACCCAGCAAACCCTTCTGCAAATCAAGCAATCCCATCCCCTTCAACTGTCTCCCAATCTCCTCAACTCGCATCCCCACCTCTCCCTCCCATGCCTAACATCTCTCTTCCTCAAACCCAGCACATTTCACCCACCGTTGGATTGGATTACCTGCAGAAATCTACCCAGCAGCAGCTGCTGCAGCTGCAACAGCAATCTCAGTCATTGGTGCAACAATCCCAGAACGTGAATGTGAATTCCATGTCGAATTACCAGCTCCAGCAGAGGTCACCGTCGATGTCCCGAATGAACCAGCTTCAGCAGCTGAGTCAGAACCCGCAGCAGCAGCAGCAGCATTTTGGTATGATGAGGCAGCAAGGGGGCTTGTATGGGCAGGTGAGTTTTGGTGGCTCTGGTGGTATTCAACAGCAGAATCAGCAGCAGCAACAGCAAAACCCGGCACAGCAGACGCAGCAAATTGGCGGTGGGAATTTGTCGCGATCAGGCTTGATCGGGCAGAGTGGCCACCTGCCCATGTTGTCTGGCGCTGCTGCTGTTGCAGCTGCGCAATTCAATCTGCAGCCGCAGTTGTTGGCCTCGCCGAGACAAAAAGGCGGTCTGGTCCAAGGTTCCCAATTTCATCAAGGTAATTCTCCTGGGCAATCTTTACAAGGAACCCAAGCAATGGGGATGATGGGATCCATCAATTTGAGCTCTCAACTAAGAGCTAATGGGGCCATTGCTTCTTTTGCTCAACAGAGAATGAATCAGGGGCAGGGCCAACTTAGGCAACAATTGGCCCAACAAAATTCGCTCACCTCTGCACAGGTTCAGAGCTTGACAAGAACGTCTTCACTTGCATTTATGAACCCTCAGCTATCTGCGGTGTCTCAGAATGGACAGCCAGCAATGATGCAGAATTCTTTCTCACAACAGTGGTTGAAGCAAATGCCAACAATTCCCGCCCCTGGCTCACCTTCGTTCCGCATTCAACATAGGCAGCAGGTTCTCCTTCAGCAGCAACTGGCTTCTAATCAGTTGCAAAAGTCCATGCCCTCGACCCAACAACAGTTAAACCAGCTTGTACAGCAGCAGCAGCAACAAATGGGACATCCACAGCTGCAGCAGCAGCAGCATCAACAGCAACTTCAGCAGCAGCAAATACAGCAGCCACTGCAGCAACAATCGCAGCAGCAACAGCAGCAGCAGAACTCGCCAAGGATGGCTGTACCCGCAGGCCAGAAATCTCTTAGTTTAACAGGATCACAGCCTGATGCTACTGCATCTGGTACAACTACACCTGGAGGGAGTTCAAGCCAAGGAACAGAAGCAACTAACCAACTTCTGGGGAAGAGAAAGATACAAGATGTAGTCTCTCAGGTTGATTCTCAAGGAAGGCTGGATCCAGAAGTTGAAGATCTTCTCTTGGAGATTGCTGATGACTTCATTGATTCTGTGACAACATATGCATGCAATTTGGCAAAGCATAGAAAATCTTCAACTTTAGAGTCCAAGGATGTGTTGCTACACCTAGAGAAAAATTGGCATTTGACAATTCCCGGTTTTTCAAGTGAGGAGAGGAAGTACCAAAACAAATCATTGTCGAGTGATCTCCATAAGAAGCGTTTGGATGTGATTCGGGCACTGATGGAATCGTCAAACCTGGACACAAATCCCAATACGCCTAAAGAGATGATCAGAGGGTTTGGCAATCCAGTTGGTGCAAACCACTTAATAAAACCATCTCCTGGTGCAGAACAGTTGGTTTCACAATCAACTGGTTCTCAAATGATGCAGCAAATGACTCGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000125 GO:0000428 GO:0001085 GO:0001101 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010104 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010646 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0023051 GO:0023052 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032870 GO:0032991 GO:0033276 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070297 GO:0070461 GO:0070887 GO:0070897 GO:0071229 GO:0071310 GO:0071368 GO:0071395 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TFIID_20kDa

Protein Analysis

630

Amino Acids

68.45

Weight (kDa)

9.76

Isoelectric Point (pI)

74.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIID_20kDa PF03847 475 - 542 1.1e-30 Transcription initiation factor TFIID subunit A
Histone PF00125 477 - 534 5.9e-06 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17440 AT1G17440
fragaria_vesca FvH4_6g34640 FvH4_6g34640
malus_domestica MD09G1184100.v1.1 MD17G1168400.v1.1
prunus_persica Prupe.3G042400_v2.0.a1
pyrus_communis pycom09g10180 pycom17g16450
rosa_chinensis RchiOBHm_Chr2g0145171
rosa_laevigata RLG00000020131
rosa_multiflora Rmu_sc0002506.1_g000036
rosa_roxburghii Rroxscaffold_2G00100820
rosa_rugosa Rorug02G0390800 Rorug02G0390800 Rorug02G0390900
rosa_samantha Rh2AG443500 Rh2BG454500 Rh2CG430500 Rh2DG464400
rosa_wichuraiana Rw2G036270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 460, 612
AasI GACNNNNNNGTC 1 cut(s) 922
Acc16I TGCGCA 1 cut(s) 642
Acc36I ACCTGC 4 cut(s) 255, 460, 612, 1069
AccB7I CCANNNNNTGG 3 cut(s) 760, 1420, 1823
AccII CGCG 1 cut(s) 574
AciI CCGC 9 cut(s) 5, 413, 558, 659, 690, 959, 1038, 1060, 1308
AclWI GGATC 5 cut(s) 768, 781, 1345, 1472, 1485
AcoI YGGCCR 1 cut(s) 598
AcsI RAATTY 4 cut(s) 331, 565, 883, 994
AcuI CTGAAG 3 cut(s) 377, 1073, 1208
AfaI GTAC 4 cut(s) 1161, 1305, 1366, 1661
AfiI CCNNNNNNNGG 5 cut(s) 233, 760, 1043, 1420, 1823
AgsI TTSAA 9 cut(s) 141, 500, 649, 1018, 1067, 1389, 1490, 1575, 1644
AjnI CCWGG 5 cut(s) 730, 1042, 1375, 1737, 1822
AleI CACNNNNGTG 1 cut(s) 1009
Alw21I GWGCWC 1 cut(s) 791
Alw26I GTCTC 4 cut(s) 151, 673, 969, 1453
AlwI GGATC 5 cut(s) 768, 781, 1345, 1472, 1485
AlwNI CAGNNNCTG 5 cut(s) 271, 274, 400, 1099, 1249
AoxI GGCC 7 cut(s) 13, 598, 669, 810, 853, 873, 1312
ApoI RAATTY 4 cut(s) 331, 565, 883, 994
ArsI GACNNNNNNTTYG 2 cut(s) 676, 708
Asp700I GAANNNNTTC 4 cut(s) 925, 998, 1494, 1570
AspLEI GCGC 2 cut(s) 623, 643
AspS9I GGNCC 5 cut(s) 14, 697, 810, 853, 874
AsuC2I CCSGG 2 cut(s) 533, 1635
AsuHPI GGTGA 5 cut(s) 216, 357, 484, 883, 1041
AvaII GGWCC 1 cut(s) 697
BaeGI GKGCMC 1 cut(s) 1720
BalI TGGCCA 1 cut(s) 600
BamHI GGATCC 2 cut(s) 773, 1477
BanII GRGCYC 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 918
Bbv12I GWGCWC 1 cut(s) 791
BbvCI CCTCAGC 1 cut(s) 948
BccI CCATC 7 cut(s) 25, 139, 763, 785, 1291, 1717, 1825
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 1 cut(s) 1862
BciT130I CCWGG 5 cut(s) 732, 1044, 1377, 1739, 1824
BclI TGATCA 2 cut(s) 87, 1770
BcnI CCSGG 2 cut(s) 533, 1635
BcoDI GTCTC 4 cut(s) 151, 673, 969, 1453
BfaI CTAG 1 cut(s) 1607
BfmI CTRYAG 5 cut(s) 248, 275, 653, 1196, 1250
BfoI RGCGCY 1 cut(s) 624
BfuAI ACCTGC 4 cut(s) 255, 460, 612, 1069
BglII AGATCT 1 cut(s) 1492
Bme1390I CCNGG 7 cut(s) 533, 732, 1044, 1377, 1635, 1739, 1824
Bme18I GGWCC 1 cut(s) 697
BmgT120I GGNCC 5 cut(s) 14, 697, 810, 853, 874
BmiI GGNNCC 5 cut(s) 706, 751, 775, 811, 1479
BmrFI CCNGG 7 cut(s) 533, 732, 1044, 1377, 1635, 1739, 1824
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 7 cut(s) 77, 176, 978, 1219, 1339, 1367, 1857
BmuI ACTGGG 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 918
BpmI CTGGAG 2 cut(s) 338, 1398
Bpu10I CCTNAGC 1 cut(s) 948
BpuEI CTTGAG 1 cut(s) 1449
BpuMI CCSGG 2 cut(s) 533, 1635
BsaJI CCNNGG 6 cut(s) 700, 731, 1042, 1292, 1393, 1587
BsaXI ACNNNNNCTCC 2 cut(s) 1643, 1673
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 760, 1043, 1420, 1823
Bse1I ACTGG 4 cut(s) 45, 1104, 1790, 1858
Bse3DI GCAATG 3 cut(s) 765, 813, 990
BseBI CCWGG 5 cut(s) 732, 1044, 1377, 1739, 1824
BseDI CCNNGG 6 cut(s) 700, 731, 1042, 1292, 1393, 1587
BseGI GGATG 7 cut(s) 131, 167, 771, 1186, 1302, 1597, 1711
BseLI CCNNNNNNNGG 5 cut(s) 233, 760, 1043, 1420, 1823
BseMI GCAATG 3 cut(s) 765, 813, 990
BseMII CTCAG 5 cut(s) 308, 392, 962, 980, 1466
BseNI ACTGG 4 cut(s) 45, 1104, 1790, 1858
BseRI GAGGAG 2 cut(s) 147, 1664
BseSI GKGCMC 1 cut(s) 1720
BseYI CCCAGC 4 cut(s) 55, 100, 213, 261
BsgI GTGCAG 2 cut(s) 882, 1848
Bsh1236I CGCG 1 cut(s) 574
BshFI GGCC 7 cut(s) 15, 600, 671, 812, 855, 875, 1314
BsiHKAI GWGCWC 1 cut(s) 791
BsiSI CCGG 2 cut(s) 533, 1635
BslFI GGGAC 3 cut(s) 10, 361, 1197
BslI CCNNNNNNNGG 5 cut(s) 233, 760, 1043, 1420, 1823
BsmAI GTCTC 4 cut(s) 151, 673, 969, 1453
BsmFI GGGAC 3 cut(s) 10, 361, 1197
BsmI GAATGC 1 cut(s) 1062
BsnI GGCC 7 cut(s) 15, 600, 671, 812, 855, 875, 1314
Bsp1286I GDGCHC 2 cut(s) 791, 1720
Bsp1407I TGTACA 1 cut(s) 1159
Bsp143I GATC 9 cut(s) 87, 575, 585, 773, 1337, 1477, 1492, 1684, 1770
Bsp68I TCGCGA 1 cut(s) 574
BspACI CCGC 9 cut(s) 5, 413, 558, 659, 690, 959, 1038, 1060, 1308
BspANI GGCC 7 cut(s) 15, 600, 671, 812, 855, 875, 1314
BspCNI CTCAG 5 cut(s) 307, 393, 961, 979, 1465
BspFNI CGCG 1 cut(s) 574
BspLI GGNNCC 5 cut(s) 706, 751, 775, 811, 1479
BspMAI CTGCAG 5 cut(s) 252, 279, 657, 1200, 1254
BspMI ACCTGC 4 cut(s) 255, 460, 612, 1069
BspPI GGATC 5 cut(s) 768, 781, 1345, 1472, 1485
BsrDI GCAATG 3 cut(s) 765, 813, 990
BsrGI TGTACA 1 cut(s) 1159
BsrI ACTGG 4 cut(s) 45, 1104, 1790, 1858
BssECI CCNNGG 6 cut(s) 700, 731, 1042, 1292, 1393, 1587
BssMI GATC 9 cut(s) 87, 575, 585, 773, 1337, 1477, 1492, 1684, 1770
BssT1I CCWWGG 4 cut(s) 700, 1292, 1393, 1587
Bst2UI CCWGG 5 cut(s) 732, 1044, 1377, 1739, 1824
Bst4CI ACNGT 6 cut(s) 145, 232, 369, 1011, 1146, 1836
Bst6I CTCTTC 2 cut(s) 207, 1421
BstAPI GCANNNNNTGC 3 cut(s) 271, 274, 1249
BstAUI TGTACA 1 cut(s) 1159
BstC8I GCNNGC 3 cut(s) 981, 1312, 1546
BstDEI CTNAG 8 cut(s) 294, 401, 797, 860, 948, 966, 1325, 1452
BstEII GGTNACC 1 cut(s) 363
BstF5I GGATG 7 cut(s) 131, 167, 771, 1186, 1302, 1597, 1711
BstFNI CGCG 1 cut(s) 574
BstH2I RGCGCY 1 cut(s) 624
BstHHI GCGC 2 cut(s) 623, 643
BstKTI GATC 9 cut(s) 90, 578, 588, 776, 1340, 1480, 1495, 1687, 1773
BstMAI GTCTC 4 cut(s) 151, 673, 969, 1453
BstMBI GATC 9 cut(s) 87, 575, 585, 773, 1337, 1477, 1492, 1684, 1770
BstNI CCWGG 5 cut(s) 732, 1044, 1377, 1739, 1824
BstNSI RCATGY 1 cut(s) 1548
BstPI GGTNACC 1 cut(s) 363
BstSCI CCNGG 7 cut(s) 531, 730, 1042, 1375, 1633, 1737, 1822
BstSFI CTRYAG 5 cut(s) 248, 275, 653, 1196, 1250
BstSLI GKGCMC 1 cut(s) 1720
BstUI CGCG 1 cut(s) 574
BstV2I GAAGAC 1 cut(s) 918
BstX2I RGATCY 3 cut(s) 773, 1477, 1492
BstYI RGATCY 3 cut(s) 773, 1477, 1492
BsuRI GGCC 7 cut(s) 15, 600, 671, 812, 855, 875, 1314
BtsCI GGATG 7 cut(s) 131, 167, 771, 1186, 1302, 1597, 1711
BtsI GCAGTG 1 cut(s) 1247
BtsIMutI CAGTG 3 cut(s) 1016, 1247, 1718
BtuMI TCGCGA 1 cut(s) 574
BveI ACCTGC 4 cut(s) 255, 460, 612, 1069
Cac8I GCNNGC 3 cut(s) 981, 1312, 1546
CaiI CAGNNNCTG 5 cut(s) 271, 274, 400, 1099, 1249
CfoI GCGC 2 cut(s) 623, 643
Cfr13I GGNCC 5 cut(s) 14, 697, 810, 853, 874
CseI GACGC 1 cut(s) 553
Csp6I GTAC 4 cut(s) 1160, 1304, 1365, 1660
CviAII CATG 5 cut(s) 187, 337, 610, 1126, 1545
CviQI GTAC 4 cut(s) 1160, 1304, 1365, 1660
DdeI CTNAG 8 cut(s) 294, 401, 797, 860, 948, 966, 1325, 1452
DpnI GATC 9 cut(s) 89, 577, 587, 775, 1339, 1479, 1494, 1686, 1772
DpnII GATC 9 cut(s) 87, 575, 585, 773, 1337, 1477, 1492, 1684, 1770
DrdI GACNNNNNNGTC 1 cut(s) 922
DseDI GACNNNNNNGTC 1 cut(s) 922
EaeI YGGCCR 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 207, 1421
EarI CTCTTC 2 cut(s) 207, 1421
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 789
Eco130I CCWWGG 4 cut(s) 700, 1292, 1393, 1587
Eco24I GRGCYC 1 cut(s) 791
Eco47I GGWCC 1 cut(s) 697
Eco53kI GAGCTC 1 cut(s) 789
Eco57I CTGAAG 3 cut(s) 377, 1073, 1208
Eco91I GGTNACC 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 789
EcoO65I GGTNACC 1 cut(s) 363
EcoRI GAATTC 2 cut(s) 331, 994
EcoRII CCWGG 5 cut(s) 730, 1042, 1375, 1737, 1822
EcoT14I CCWWGG 4 cut(s) 700, 1292, 1393, 1587
EcoT22I ATGCAT 1 cut(s) 1546
EcoT38I GRGCYC 1 cut(s) 791
ErhI CCWWGG 4 cut(s) 700, 1292, 1393, 1587
FaeI CATG 5 cut(s) 190, 340, 613, 1129, 1548
FalI AAGNNNNNCTT 2 cut(s) 910, 942
FaqI GGGAC 3 cut(s) 10, 361, 1197
FatI CATG 5 cut(s) 186, 336, 609, 1125, 1544
FauI CCCGC 3 cut(s) 420, 1045, 1315
FauNDI CATATG 1 cut(s) 1540
FbaI TGATCA 2 cut(s) 87, 1770
FokI GGATG 7 cut(s) 118, 154, 778, 1173, 1309, 1604, 1718
FriOI GRGCYC 1 cut(s) 791
FspBI CTAG 1 cut(s) 1607
FspI TGCGCA 1 cut(s) 642
GlaI GCGC 2 cut(s) 622, 642
GsaI CCCAGC 4 cut(s) 59, 104, 217, 265
GsuI CTGGAG 2 cut(s) 338, 1398
HaeII RGCGCY 1 cut(s) 624
HaeIII GGCC 7 cut(s) 15, 600, 671, 812, 855, 875, 1314
HapII CCGG 2 cut(s) 533, 1635
HgaI GACGC 1 cut(s) 553
HhaI GCGC 2 cut(s) 623, 643
Hin1II CATG 5 cut(s) 190, 340, 613, 1129, 1548
Hin6I GCGC 2 cut(s) 621, 641
HinP1I GCGC 2 cut(s) 621, 641
HinfI GANTC 9 cut(s) 403, 508, 841, 1460, 1526, 1583, 1711, 1727, 1879
HpaII CCGG 2 cut(s) 533, 1635
HphI GGTGA 5 cut(s) 216, 357, 484, 883, 1041
Hpy188I TCNGA 4 cut(s) 408, 909, 969, 1775
Hpy188III TCNNGA 3 cut(s) 378, 573, 1481
Hpy99I CGWCG 2 cut(s) 25, 373
HpyAV CCTTC 5 cut(s) 120, 147, 1062, 1097, 1464
HpyCH4III ACNGT 6 cut(s) 145, 232, 369, 1011, 1146, 1836
HpyCH4IV ACGT 2 cut(s) 321, 923
HpyF3I CTNAG 8 cut(s) 294, 401, 797, 860, 948, 966, 1325, 1452
HpySE526I ACGT 2 cut(s) 321, 923
Hsp92II CATG 5 cut(s) 190, 340, 613, 1129, 1548
HspAI GCGC 2 cut(s) 621, 641
Ksp22I TGATCA 2 cut(s) 87, 1770
Kzo9I GATC 9 cut(s) 87, 575, 585, 773, 1337, 1477, 1492, 1684, 1770
LmnI GCTCC 1 cut(s) 357
LweI GCATC 7 cut(s) 77, 176, 978, 1219, 1339, 1367, 1857
MaeI CTAG 1 cut(s) 1607
MaeII ACGT 2 cut(s) 321, 923
MaeIII GTNAC 2 cut(s) 363, 1531
MalI GATC 9 cut(s) 89, 577, 587, 775, 1339, 1479, 1494, 1686, 1772
MboI GATC 9 cut(s) 87, 575, 585, 773, 1337, 1477, 1492, 1684, 1770
MboII GAAGA 6 cut(s) 194, 918, 1438, 1487, 1502, 1563
MfeI CAATTG 1 cut(s) 869
MflI RGATCY 3 cut(s) 773, 1477, 1492
MhlI GDGCHC 2 cut(s) 791, 1720
MlsI TGGCCA 1 cut(s) 600
MluNI TGGCCA 1 cut(s) 600
MlyI GAGTC 3 cut(s) 412, 1592, 1873
MmeI TCCRAC 2 cut(s) 64, 214
Mox20I TGGCCA 1 cut(s) 600
Mph1103I ATGCAT 1 cut(s) 1546
MroXI GAANNNNTTC 4 cut(s) 925, 998, 1494, 1570
MscI TGGCCA 1 cut(s) 600
MseI TTAA 4 cut(s) 1148, 1331, 1808, 1888
MslI CAYNNNNRTG 2 cut(s) 1009, 1543
Msp20I TGGCCA 1 cut(s) 600
MspA1I CMGCKG 5 cut(s) 271, 280, 400, 638, 1195
MspI CCGG 2 cut(s) 533, 1635
MspR9I CCNGG 7 cut(s) 533, 732, 1044, 1377, 1635, 1739, 1824
MunI CAATTG 1 cut(s) 869
Mva1269I GAATGC 1 cut(s) 1062
MvaI CCWGG 5 cut(s) 732, 1044, 1377, 1739, 1824
MvnI CGCG 1 cut(s) 574
NciI CCSGG 2 cut(s) 533, 1635
NdeI CATATG 1 cut(s) 1540
NdeII GATC 9 cut(s) 87, 575, 585, 773, 1337, 1477, 1492, 1684, 1770
NlaIII CATG 5 cut(s) 190, 340, 613, 1129, 1548
NlaIV GGNNCC 5 cut(s) 706, 751, 775, 811, 1479
NmeAIII GCCGAG 1 cut(s) 702
NmuCI GTSAC 2 cut(s) 363, 1531
NruI TCGCGA 1 cut(s) 574
NsbI TGCGCA 1 cut(s) 642
NsiI ATGCAT 1 cut(s) 1546
NspI RCATGY 1 cut(s) 1548
OliI CACNNNNGTG 1 cut(s) 1009
PaeI GCATGC 1 cut(s) 1548
PaqCI CACCTGC 2 cut(s) 460, 612
PctI GAATGC 1 cut(s) 1062
PdmI GAANNNNTTC 4 cut(s) 925, 998, 1494, 1570
PfeI GAWTC 6 cut(s) 508, 841, 1460, 1526, 1711, 1727
PflMI CCANNNNNTGG 3 cut(s) 760, 1420, 1823
PleI GAGTC 3 cut(s) 411, 1591, 1873
PpsI GAGTC 3 cut(s) 411, 1591, 1873
Psp124BI GAGCTC 1 cut(s) 791
Psp6I CCWGG 5 cut(s) 730, 1042, 1375, 1737, 1822
PspEI GGTNACC 1 cut(s) 363
PspFI CCCAGC 4 cut(s) 55, 100, 213, 261
PspGI CCWGG 5 cut(s) 730, 1042, 1375, 1737, 1822
PspN4I GGNNCC 5 cut(s) 706, 751, 775, 811, 1479
PspPI GGNCC 5 cut(s) 14, 697, 810, 853, 874
PstI CTGCAG 5 cut(s) 252, 279, 657, 1200, 1254
PstNI CAGNNNCTG 5 cut(s) 271, 274, 400, 1099, 1249
PsuI RGATCY 3 cut(s) 773, 1477, 1492
PvuII CAGCTG 5 cut(s) 271, 280, 400, 638, 1195
RruI TCGCGA 1 cut(s) 574
RsaI GTAC 4 cut(s) 1161, 1305, 1366, 1661
RsaNI GTAC 4 cut(s) 1160, 1304, 1365, 1660
RseI CAYNNNNRTG 2 cut(s) 1009, 1543
SacI GAGCTC 1 cut(s) 791
SaqAI TTAA 4 cut(s) 1148, 1331, 1808, 1888
Sau3AI GATC 9 cut(s) 87, 575, 585, 773, 1337, 1477, 1492, 1684, 1770
Sau96I GGNCC 5 cut(s) 14, 697, 810, 853, 874
SchI GAGTC 3 cut(s) 412, 1592, 1873
ScrFI CCNGG 7 cut(s) 533, 732, 1044, 1377, 1635, 1739, 1824
SduI GDGCHC 2 cut(s) 791, 1720
SfaNI GCATC 7 cut(s) 77, 176, 978, 1219, 1339, 1367, 1857
SfcI CTRYAG 5 cut(s) 248, 275, 653, 1196, 1250
SinI GGWCC 1 cut(s) 697
SmiMI CAYNNNNRTG 2 cut(s) 1009, 1543
SmlI CTYRAG 1 cut(s) 1464
SmoI CTYRAG 1 cut(s) 1464
SphI GCATGC 1 cut(s) 1548
SsiI CCGC 9 cut(s) 5, 413, 558, 659, 690, 959, 1038, 1060, 1308
SspMI CTAG 1 cut(s) 1607
SstI GAGCTC 1 cut(s) 791
StyD4I CCNGG 7 cut(s) 531, 730, 1042, 1375, 1633, 1737, 1822
StyI CCWWGG 4 cut(s) 700, 1292, 1393, 1587
TaaI ACNGT 6 cut(s) 145, 232, 369, 1011, 1146, 1836
TaiI ACGT 2 cut(s) 324, 926
TaqI TCGA 4 cut(s) 341, 371, 1133, 1679
TatI WGTACW 1 cut(s) 1159
TauI GCSGC 1 cut(s) 661
TfiI GAWTC 6 cut(s) 508, 841, 1460, 1526, 1711, 1727
Tru1I TTAA 4 cut(s) 1148, 1331, 1808, 1888
Tru9I TTAA 4 cut(s) 1148, 1331, 1808, 1888
TscAI CASTG 3 cut(s) 1016, 1254, 1725
TseFI GTSAC 2 cut(s) 363, 1531
Tsp45I GTSAC 2 cut(s) 363, 1531
TspDTI ATGAA 5 cut(s) 398, 704, 854, 956, 1510
TspRI CASTG 3 cut(s) 1016, 1254, 1725
Van91I CCANNNNNTGG 3 cut(s) 760, 1420, 1823
VpaK11BI GGWCC 1 cut(s) 697
XapI RAATTY 4 cut(s) 331, 565, 883, 994
XceI RCATGY 1 cut(s) 1548
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmnI GAANNNNTTC 4 cut(s) 925, 998, 1494, 1570
XspI CTAG 1 cut(s) 1607
Zsp2I ATGCAT 1 cut(s) 1546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.