MD17G1168400.v1.1

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010142
Physical Location & Seq
Reverse (-)
17070927 .. 17076805
5879 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1168400.v1.1.491

Sequence Viewer

Length: 1893 bp
ATGGCGGAAAACGGCCCATCGTCGTCCCCAAACCCCCTCCAACCCAACATTGACCCAGCAGCAGCAGTAGCATCACCCTCAAACGTTATGATCACCCAAAACCCAGCAATCCTATCCTCTTCAACTCTCTCCCAGTCTCCACAAATCGCATCCCCACCTCTCCCTCCCCTGCCCAACGTCTCGCTTCCTCAAACCCAGCACATTTCGCCCCCCGTCGGATTGGATTACGCGCAGAAATCGACCCAGCAGCAGCAACAGCTGCAACAGCAATCTCAGTCATTGGTGCAACAATCCCAGAACGTGAATGTGAATTCCATGTCGAATTACCAGCTCCAGCAGAGTCTGCAGAGGACGCCGTCGATGTCCCGAATGAACCAGCTTCAGCCGCTGAGCCAGAACCCGCAGCAGCAACAGCAGCATTTCGGTATGATGAGGCAGCAAGGGGGTTTGTATGGGCAGGTGAATTTTGGTGGCCCTGGTGGTATCCAACAGCAGAATCAGCAGCAGCAACAGCAAAACCAGGCACAGCAGACTCAGCAACTTGGCGGTGGGAACTTGTCGCGATCAGCCTTGATCGGGCAGAGTGGCCACCTGCCCATGTTGTCTGGCCCTGCTGCTGTTGCAGCTGCGCAATTCAATCTGCAGCCGCAGTTGTTGGCCTCGCCGAGGCAAAAAGGCAGCCTGGTCCAAGGTTCCCAATTTCATCACGGTAATTCTCCTGGGCAATCTTTACAAGGAACACAAGCAATGGGGGTGATGGGATCCATCAATTTGAGCTCGCAACTAAGAGCTAATGGGGCCATTGCTTCTTTTGCTCAACAGAGAATAAATCAGGGGCAGGGCCAACTTAGGCAACAGTTGGCCCAACAGAGTCCGCTCACCTCTGCACAGGTTCAGAGCTTGCCAAGAACATCTTCACTATCTTTTATGAACCCTCAGTTATCTGGTGTGTCTCAGAATGGACAGCCAGCAATGATACAGAATTCTTTATCACAACAGTGGTTGAAGCAAATGCCAGCAAGTCCTGGCCCTGGTTCACCTTCACCTTCACCTTCATCGCGTCTTCAACAACATAGGCAGCAGGTTCTCTATCAGCAGCAACTGGCTTCTAATCAGTTGCAGAAGTCTATGCCCTTGACCCCGCAACAGTTTAACCAGCTTGTACAGCAGCAGCAACAAATGGGACATCCACAGCTGCAACAGCAGCAGCATCAACAGCAACTTCAGCAGCAGCAAATACAGCAGCCACTACAACAACAATCGCAGCAGCAGCAGCAGCAACAGCTGAGTTCCCCAAGGATGGCTGGACCCGCAGGCCAGAAATCTCTTAGTTTAACAGGATCACACCCTGATGCTGCTGCATCTGGTACTACCACACCTGGAGGGAGTTCAAGCCAAGGAACAGAAGCAACTAACCAACTTCTCGGGAAGAGAAAGATACAAGATTTAGTCTCTCAGGTTGATTCACAAGGCAGGCTGGATCCTGAAGTTGAAGATCTTCTCTTGGAGATTGCTGATGACTTCATTGATTCTGTGACAACATATGCATGCAATTTGGCAAAGCATAGAAAATCTTCAACTTTAGAGTCCAAGGATGTGTTGCTACATCTAGAGAAAAATTGGCATTTGACAATTCCCGGGTTTTCAAGTGAGGAGAGGAAGTGCCAAAACAAATCTTTGTCAAGTGATCTCCATAAGAAGCGTTTGGATGTGATACGGACGCTGATGGAATCATCGAACCTGGAAAAAAATCCCAATACTCCTAAAGAGATGATCAGGGGGTTTGGCAATGCAGTTGGTACCAACCACTTGATTAGACCATCTCTTGGTGCAGAACAGTTGGTTTCACAATCAACTGGTTCTCAAATGCTGCAGCAAATGACTCGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000125 GO:0000428 GO:0001085 GO:0001101 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010104 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010646 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0023051 GO:0023052 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032870 GO:0032991 GO:0033276 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070297 GO:0070461 GO:0070887 GO:0070897 GO:0071229 GO:0071310 GO:0071368 GO:0071395 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TFIID_20kDa

Protein Analysis

631

Amino Acids

68.48

Weight (kDa)

9.85

Isoelectric Point (pI)

77.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIID_20kDa PF03847 476 - 543 1.7e-31 Transcription initiation factor TFIID subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17440 AT1G17440
fragaria_vesca FvH4_6g34640 FvH4_6g34640
malus_domestica MD09G1184100.v1.1 MD17G1168400.v1.1
prunus_persica Prupe.3G042400_v2.0.a1
pyrus_communis pycom09g10180 pycom17g16450
rosa_chinensis RchiOBHm_Chr2g0145171
rosa_laevigata RLG00000020131
rosa_multiflora Rmu_sc0002506.1_g000036
rosa_roxburghii Rroxscaffold_2G00100820
rosa_rugosa Rorug02G0390800 Rorug02G0390800 Rorug02G0390900
rosa_samantha Rh2AG443500 Rh2BG454500 Rh2CG430500 Rh2DG464400
rosa_wichuraiana Rw2G036270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 448, 600
Acc16I TGCGCA 1 cut(s) 630
Acc36I ACCTGC 3 cut(s) 448, 600, 1072
Acc65I GGTACC 1 cut(s) 1799
AccB1I GGYRCC 1 cut(s) 1799
AccB7I CCANNNNNTGG 1 cut(s) 1826
AccBSI CCGCTC 1 cut(s) 877
AccII CGCG 3 cut(s) 230, 562, 1060
AciI CCGC 8 cut(s) 5, 386, 401, 546, 647, 875, 1142, 1311
AclI AACGTT 1 cut(s) 84
AclWI GGATC 5 cut(s) 756, 769, 1348, 1475, 1488
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 3 cut(s) 310, 463, 982
AcuI CTGAAG 3 cut(s) 365, 1208, 1506
AcyI GRCGYC 1 cut(s) 353
AfaI GTAC 3 cut(s) 1164, 1369, 1801
AfiI CCNNNNNNNGG 6 cut(s) 215, 576, 666, 1031, 1300, 1826
AgsI TTSAA 8 cut(s) 123, 637, 1006, 1067, 1392, 1493, 1578, 1647
AjnI CCWGG 8 cut(s) 475, 519, 681, 718, 1024, 1030, 1378, 1740
AjuI GAANNNNNNNTTGG 2 cut(s) 898, 930
AleI CACNNNNGTG 1 cut(s) 997
Alw21I GWGCWC 1 cut(s) 779
Alw26I GTCTC 4 cut(s) 141, 184, 957, 1456
AlwI GGATC 5 cut(s) 756, 769, 1348, 1475, 1488
AlwNI CAGNNNCTG 3 cut(s) 343, 388, 1102
Ama87I CYCGRG 2 cut(s) 1424, 1637
ApoI RAATTY 3 cut(s) 310, 463, 982
Asp700I GAANNNNTTC 3 cut(s) 913, 1497, 1573
Asp718I GGTACC 1 cut(s) 1799
AspLEI GCGC 2 cut(s) 232, 631
AspS9I GGNCC 9 cut(s) 14, 473, 608, 685, 798, 841, 862, 1028, 1307
AsuC2I CCSGG 2 cut(s) 1638, 1639
AsuHPI GGTGA 8 cut(s) 66, 85, 472, 766, 871, 1029, 1035, 1041
AvaI CYCGRG 2 cut(s) 1424, 1637
AvaII GGWCC 2 cut(s) 685, 1307
BalI TGGCCA 1 cut(s) 588
BamHI GGATCC 2 cut(s) 761, 1480
BanI GGYRCC 1 cut(s) 1799
BanII GRGCYC 1 cut(s) 779
BbsI GAAGAC 1 cut(s) 1055
Bbv12I GWGCWC 1 cut(s) 779
BccI CCATC 6 cut(s) 25, 751, 773, 1294, 1720, 1828
BceAI ACGGC 2 cut(s) 28, 340
BcgI CGANNNNNNTGC 1 cut(s) 1865
BciT130I CCWGG 8 cut(s) 477, 521, 683, 720, 1026, 1032, 1380, 1742
BciVI GTATCC 1 cut(s) 494
BclI TGATCA 2 cut(s) 90, 1773
BcnI CCSGG 2 cut(s) 1638, 1639
BcoDI GTCTC 4 cut(s) 141, 184, 957, 1456
BfaI CTAG 1 cut(s) 1610
BfmI CTRYAG 3 cut(s) 344, 641, 1871
BfuAI ACCTGC 3 cut(s) 448, 600, 1072
BfuI GTATCC 1 cut(s) 494
BglII AGATCT 1 cut(s) 1495
BlpI GCTNAGC 1 cut(s) 389
Bme18I GGWCC 2 cut(s) 685, 1307
BmeT110I CYCGRG 2 cut(s) 1424, 1637
BmgT120I GGNCC 9 cut(s) 14, 473, 608, 685, 798, 841, 862, 1028, 1307
BmiI GGNNCC 6 cut(s) 694, 763, 799, 1309, 1482, 1801
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 5 cut(s) 80, 158, 1219, 1342, 1370
BmuI ACTGGG 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 1055
BpmI CTGGAG 2 cut(s) 317, 1401
Bpu1102I GCTNAGC 1 cut(s) 389
BpuMI CCSGG 2 cut(s) 1638, 1639
BsaHI GRCGYC 1 cut(s) 353
BsaJI CCNNGG 9 cut(s) 475, 665, 688, 719, 1030, 1295, 1396, 1590, 1637
BsaXI ACNNNNNCTCC 2 cut(s) 1646, 1676
Bsc4I CCNNNNNNNGG 6 cut(s) 215, 576, 666, 1031, 1300, 1826
Bse1I ACTGG 3 cut(s) 133, 1107, 1861
Bse3DI GCAATG 4 cut(s) 753, 801, 978, 1795
BseBI CCWGG 8 cut(s) 477, 521, 683, 720, 1026, 1032, 1380, 1742
BseDI CCNNGG 9 cut(s) 475, 665, 688, 719, 1030, 1295, 1396, 1590, 1637
BseGI GGATG 5 cut(s) 149, 1186, 1305, 1600, 1714
BseLI CCNNNNNNNGG 6 cut(s) 215, 576, 666, 1031, 1300, 1826
BseMI GCAATG 4 cut(s) 753, 801, 978, 1795
BseMII CTCAG 7 cut(s) 287, 380, 548, 950, 968, 1277, 1469
BseNI ACTGG 3 cut(s) 133, 1107, 1861
BseRI GAGGAG 1 cut(s) 1667
BseYI CCCAGC 4 cut(s) 55, 103, 195, 243
BsgI GTGCAG 2 cut(s) 870, 1851
Bsh1236I CGCG 3 cut(s) 230, 562, 1060
BshNI GGYRCC 1 cut(s) 1799
BsiHKAI GWGCWC 1 cut(s) 779
BsiHKCI CYCGRG 2 cut(s) 1424, 1637
BsiSI CCGG 1 cut(s) 1638
BslFI GGGAC 3 cut(s) 10, 349, 1197
BslI CCNNNNNNNGG 6 cut(s) 215, 576, 666, 1031, 1300, 1826
BsmAI GTCTC 4 cut(s) 141, 184, 957, 1456
BsmBI CGTCTC 1 cut(s) 184
BsmFI GGGAC 3 cut(s) 10, 349, 1197
BsoBI CYCGRG 2 cut(s) 1424, 1637
Bsp1286I GDGCHC 1 cut(s) 779
Bsp1407I TGTACA 1 cut(s) 1162
Bsp143I GATC 9 cut(s) 90, 563, 573, 761, 1340, 1480, 1495, 1687, 1773
Bsp1720I GCTNAGC 1 cut(s) 389
Bsp68I TCGCGA 1 cut(s) 562
BspACI CCGC 8 cut(s) 5, 386, 401, 546, 647, 875, 1142, 1311
BspCNI CTCAG 7 cut(s) 286, 381, 547, 949, 967, 1278, 1468
BspFNI CGCG 3 cut(s) 230, 562, 1060
BspLI GGNNCC 6 cut(s) 694, 763, 799, 1309, 1482, 1801
BspMAI CTGCAG 3 cut(s) 348, 645, 1875
BspMI ACCTGC 3 cut(s) 448, 600, 1072
BspPI GGATC 5 cut(s) 756, 769, 1348, 1475, 1488
BspT107I GGYRCC 1 cut(s) 1799
BsrBI CCGCTC 1 cut(s) 877
BsrDI GCAATG 4 cut(s) 753, 801, 978, 1795
BsrGI TGTACA 1 cut(s) 1162
BsrI ACTGG 3 cut(s) 133, 1107, 1861
BssECI CCNNGG 9 cut(s) 475, 665, 688, 719, 1030, 1295, 1396, 1590, 1637
BssMI GATC 9 cut(s) 90, 563, 573, 761, 1340, 1480, 1495, 1687, 1773
BssNI GRCGYC 1 cut(s) 353
BssT1I CCWWGG 4 cut(s) 688, 1295, 1396, 1590
Bst2UI CCWGG 8 cut(s) 477, 521, 683, 720, 1026, 1032, 1380, 1742
Bst4CI ACNGT 5 cut(s) 710, 858, 999, 1149, 1839
Bst6I CTCTTC 2 cut(s) 124, 1424
BstACI GRCGYC 1 cut(s) 353
BstAPI GCANNNNNTGC 2 cut(s) 259, 343
BstAUI TGTACA 1 cut(s) 1162
BstC8I GCNNGC 7 cut(s) 779, 902, 969, 1017, 1315, 1475, 1549
BstENI CCTNNNNNAGG 1 cut(s) 664
BstF5I GGATG 5 cut(s) 149, 1186, 1305, 1600, 1714
BstFNI CGCG 3 cut(s) 230, 562, 1060
BstHHI GCGC 2 cut(s) 232, 631
BstKTI GATC 9 cut(s) 93, 566, 576, 764, 1343, 1483, 1498, 1690, 1776
BstMAI GTCTC 4 cut(s) 141, 184, 957, 1456
BstMBI GATC 9 cut(s) 90, 563, 573, 761, 1340, 1480, 1495, 1687, 1773
BstNI CCWGG 8 cut(s) 477, 521, 683, 720, 1026, 1032, 1380, 1742
BstNSI RCATGY 1 cut(s) 1551
BstSFI CTRYAG 3 cut(s) 344, 641, 1871
BstUI CGCG 3 cut(s) 230, 562, 1060
BstV2I GAAGAC 1 cut(s) 1055
BstX2I RGATCY 3 cut(s) 761, 1480, 1495
BstYI RGATCY 3 cut(s) 761, 1480, 1495
BsuI GTATCC 1 cut(s) 494
BtgZI GCGATG 1 cut(s) 1041
BtsCI GGATG 5 cut(s) 149, 1186, 1305, 1600, 1714
BtsIMutI CAGTG 1 cut(s) 1004
BtuMI TCGCGA 1 cut(s) 562
BveI ACCTGC 3 cut(s) 448, 600, 1072
Cac8I GCNNGC 7 cut(s) 779, 902, 969, 1017, 1315, 1475, 1549
CaiI CAGNNNCTG 3 cut(s) 343, 388, 1102
CfoI GCGC 2 cut(s) 232, 631
Cfr13I GGNCC 9 cut(s) 14, 473, 608, 685, 798, 841, 862, 1028, 1307
Cfr9I CCCGGG 1 cut(s) 1637
CseI GACGC 3 cut(s) 361, 1049, 1729
Csp6I GTAC 3 cut(s) 1163, 1368, 1800
CviAII CATG 3 cut(s) 316, 598, 1548
CviQI GTAC 3 cut(s) 1163, 1368, 1800
DpnI GATC 9 cut(s) 92, 565, 575, 763, 1342, 1482, 1497, 1689, 1775
DpnII GATC 9 cut(s) 90, 563, 573, 761, 1340, 1480, 1495, 1687, 1773
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 124, 1424
EarI CTCTTC 2 cut(s) 124, 1424
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 777
Eco130I CCWWGG 4 cut(s) 688, 1295, 1396, 1590
Eco24I GRGCYC 1 cut(s) 779
Eco47I GGWCC 2 cut(s) 685, 1307
Eco53kI GAGCTC 1 cut(s) 777
Eco57I CTGAAG 3 cut(s) 365, 1208, 1506
Eco88I CYCGRG 2 cut(s) 1424, 1637
EcoICRI GAGCTC 1 cut(s) 777
EcoNI CCTNNNNNAGG 1 cut(s) 664
EcoRI GAATTC 2 cut(s) 310, 982
EcoRII CCWGG 8 cut(s) 475, 519, 681, 718, 1024, 1030, 1378, 1740
EcoT14I CCWWGG 4 cut(s) 688, 1295, 1396, 1590
EcoT22I ATGCAT 1 cut(s) 1549
EcoT38I GRGCYC 1 cut(s) 779
ErhI CCWWGG 4 cut(s) 688, 1295, 1396, 1590
Esp3I CGTCTC 1 cut(s) 184
FaeI CATG 3 cut(s) 319, 601, 1551
FalI AAGNNNNNCTT 2 cut(s) 898, 930
FaqI GGGAC 3 cut(s) 10, 349, 1197
FatI CATG 3 cut(s) 315, 597, 1547
FauI CCCGC 3 cut(s) 408, 1149, 1318
FauNDI CATATG 1 cut(s) 1543
FbaI TGATCA 2 cut(s) 90, 1773
FokI GGATG 5 cut(s) 136, 1173, 1312, 1607, 1721
FriOI GRGCYC 1 cut(s) 779
FspBI CTAG 1 cut(s) 1610
FspI TGCGCA 1 cut(s) 630
GlaI GCGC 2 cut(s) 231, 630
GsaI CCCAGC 4 cut(s) 59, 107, 199, 247
GsuI CTGGAG 2 cut(s) 317, 1401
HapII CCGG 1 cut(s) 1638
HgaI GACGC 3 cut(s) 361, 1049, 1729
HhaI GCGC 2 cut(s) 232, 631
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 3 cut(s) 319, 601, 1551
Hin6I GCGC 2 cut(s) 230, 629
HinP1I GCGC 2 cut(s) 230, 629
HinfI GANTC 9 cut(s) 340, 496, 532, 871, 1463, 1529, 1586, 1730, 1882
HpaII CCGG 1 cut(s) 1638
HphI GGTGA 8 cut(s) 66, 85, 472, 766, 871, 1029, 1035, 1041
Hpy166II GTNNAC 1 cut(s) 1037
Hpy188I TCNGA 3 cut(s) 218, 897, 957
Hpy188III TCNNGA 5 cut(s) 366, 561, 1426, 1484, 1610
Hpy8I GTNNAC 1 cut(s) 1037
Hpy99I CGWCG 3 cut(s) 25, 218, 361
HpyAV CCTTC 3 cut(s) 1050, 1056, 1062
HpyCH4III ACNGT 5 cut(s) 710, 858, 999, 1149, 1839
HpyCH4IV ACGT 3 cut(s) 84, 177, 300
HpySE526I ACGT 3 cut(s) 84, 177, 300
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 3 cut(s) 319, 601, 1551
HspAI GCGC 2 cut(s) 230, 629
KpnI GGTACC 1 cut(s) 1803
Ksp22I TGATCA 2 cut(s) 90, 1773
Kzo9I GATC 9 cut(s) 90, 563, 573, 761, 1340, 1480, 1495, 1687, 1773
LmnI GCTCC 1 cut(s) 336
LweI GCATC 5 cut(s) 80, 158, 1219, 1342, 1370
MaeI CTAG 1 cut(s) 1610
MaeII ACGT 3 cut(s) 84, 177, 300
MaeIII GTNAC 1 cut(s) 1534
MalI GATC 9 cut(s) 92, 565, 575, 763, 1342, 1482, 1497, 1689, 1775
MbiI CCGCTC 1 cut(s) 877
MboI GATC 9 cut(s) 90, 563, 573, 761, 1340, 1480, 1495, 1687, 1773
MboII GAAGA 7 cut(s) 111, 906, 1055, 1441, 1490, 1505, 1566
MflI RGATCY 3 cut(s) 761, 1480, 1495
MhlI GDGCHC 1 cut(s) 779
MlsI TGGCCA 1 cut(s) 588
MluNI TGGCCA 1 cut(s) 588
MlyI GAGTC 5 cut(s) 349, 526, 880, 1595, 1876
MmeI TCCRAC 3 cut(s) 64, 196, 511
Mox20I TGGCCA 1 cut(s) 588
Mph1103I ATGCAT 1 cut(s) 1549
MroXI GAANNNNTTC 3 cut(s) 913, 1497, 1573
MscI TGGCCA 1 cut(s) 588
MseI TTAA 3 cut(s) 1152, 1334, 1891
MslI CAYNNNNRTG 3 cut(s) 997, 1350, 1546
Msp20I TGGCCA 1 cut(s) 588
MspA1I CMGCKG 5 cut(s) 259, 388, 626, 1195, 1285
MspI CCGG 1 cut(s) 1638
MvaI CCWGG 8 cut(s) 477, 521, 683, 720, 1026, 1032, 1380, 1742
MvnI CGCG 3 cut(s) 230, 562, 1060
NciI CCSGG 2 cut(s) 1638, 1639
NdeI CATATG 1 cut(s) 1543
NdeII GATC 9 cut(s) 90, 563, 573, 761, 1340, 1480, 1495, 1687, 1773
NlaIII CATG 3 cut(s) 319, 601, 1551
NlaIV GGNNCC 6 cut(s) 694, 763, 799, 1309, 1482, 1801
NmeAIII GCCGAG 1 cut(s) 690
NmuCI GTSAC 1 cut(s) 1534
NruI TCGCGA 1 cut(s) 562
NsbI TGCGCA 1 cut(s) 630
NsiI ATGCAT 1 cut(s) 1549
NspI RCATGY 1 cut(s) 1551
OliI CACNNNNGTG 1 cut(s) 997
PaeI GCATGC 1 cut(s) 1551
PaqCI CACCTGC 2 cut(s) 448, 600
PdmI GAANNNNTTC 3 cut(s) 913, 1497, 1573
PfeI GAWTC 4 cut(s) 496, 1463, 1529, 1730
PflFI GACNNNGTC 1 cut(s) 355
PflMI CCANNNNNTGG 1 cut(s) 1826
PleI GAGTC 5 cut(s) 348, 526, 879, 1594, 1876
PpsI GAGTC 5 cut(s) 348, 526, 879, 1594, 1876
Psp124BI GAGCTC 1 cut(s) 779
Psp1406I AACGTT 1 cut(s) 84
Psp6I CCWGG 8 cut(s) 475, 519, 681, 718, 1024, 1030, 1378, 1740
PspFI CCCAGC 4 cut(s) 55, 103, 195, 243
PspGI CCWGG 8 cut(s) 475, 519, 681, 718, 1024, 1030, 1378, 1740
PspN4I GGNNCC 6 cut(s) 694, 763, 799, 1309, 1482, 1801
PspPI GGNCC 9 cut(s) 14, 473, 608, 685, 798, 841, 862, 1028, 1307
PstI CTGCAG 3 cut(s) 348, 645, 1875
PstNI CAGNNNCTG 3 cut(s) 343, 388, 1102
PsuI RGATCY 3 cut(s) 761, 1480, 1495
PsyI GACNNNGTC 1 cut(s) 355
PvuII CAGCTG 4 cut(s) 259, 626, 1195, 1285
RruI TCGCGA 1 cut(s) 562
RsaI GTAC 3 cut(s) 1164, 1369, 1801
RsaNI GTAC 3 cut(s) 1163, 1368, 1800
RseI CAYNNNNRTG 3 cut(s) 997, 1350, 1546
SacI GAGCTC 1 cut(s) 779
SaqAI TTAA 3 cut(s) 1152, 1334, 1891
Sau3AI GATC 9 cut(s) 90, 563, 573, 761, 1340, 1480, 1495, 1687, 1773
Sau96I GGNCC 9 cut(s) 14, 473, 608, 685, 798, 841, 862, 1028, 1307
SchI GAGTC 5 cut(s) 349, 526, 880, 1595, 1876
SduI GDGCHC 1 cut(s) 779
SfaNI GCATC 5 cut(s) 80, 158, 1219, 1342, 1370
SfcI CTRYAG 3 cut(s) 344, 641, 1871
SinI GGWCC 2 cut(s) 685, 1307
SmaI CCCGGG 1 cut(s) 1639
SmiMI CAYNNNNRTG 3 cut(s) 997, 1350, 1546
SphI GCATGC 1 cut(s) 1551
SsiI CCGC 8 cut(s) 5, 386, 401, 546, 647, 875, 1142, 1311
SspMI CTAG 1 cut(s) 1610
SstI GAGCTC 1 cut(s) 779
StyI CCWWGG 4 cut(s) 688, 1295, 1396, 1590
TaaI ACNGT 5 cut(s) 710, 858, 999, 1149, 1839
TaiI ACGT 3 cut(s) 87, 180, 303
TaqI TCGA 4 cut(s) 239, 320, 359, 1736
TatI WGTACW 1 cut(s) 1162
TauI GCSGC 2 cut(s) 388, 649
TfiI GAWTC 4 cut(s) 496, 1463, 1529, 1730
Tru1I TTAA 3 cut(s) 1152, 1334, 1891
Tru9I TTAA 3 cut(s) 1152, 1334, 1891
TscAI CASTG 1 cut(s) 1004
TseFI GTSAC 1 cut(s) 1534
Tsp45I GTSAC 1 cut(s) 1534
TspDTI ATGAA 5 cut(s) 386, 692, 944, 1044, 1513
TspGWI ACGGA 1 cut(s) 1732
TspMI CCCGGG 1 cut(s) 1637
TspRI CASTG 1 cut(s) 1004
Tth111I GACNNNGTC 1 cut(s) 355
Van91I CCANNNNNTGG 1 cut(s) 1826
VpaK11BI GGWCC 2 cut(s) 685, 1307
XagI CCTNNNNNAGG 1 cut(s) 664
XapI RAATTY 3 cut(s) 310, 463, 982
XbaI TCTAGA 1 cut(s) 1609
XceI RCATGY 1 cut(s) 1551
XmaI CCCGGG 1 cut(s) 1637
XmnI GAANNNNTTC 3 cut(s) 913, 1497, 1573
XspI CTAG 1 cut(s) 1610
Zsp2I ATGCAT 1 cut(s) 1549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.