Transcription initiation factor TFIID subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G17440 AT1G17440 |
| fragaria_vesca | FvH4_6g34640 FvH4_6g34640 |
| malus_domestica | MD09G1184100.v1.1 MD17G1168400.v1.1 |
| prunus_persica | Prupe.3G042400_v2.0.a1 |
| pyrus_communis | pycom09g10180 pycom17g16450 |
| rosa_chinensis | RchiOBHm_Chr2g0145171 |
| rosa_laevigata | RLG00000020131 |
| rosa_multiflora | Rmu_sc0002506.1_g000036 |
| rosa_roxburghii | Rroxscaffold_2G00100820 |
| rosa_rugosa | Rorug02G0390800 Rorug02G0390800 Rorug02G0390900 |
| rosa_samantha | Rh2AG443500 Rh2BG454500 Rh2CG430500 Rh2DG464400 |
| rosa_wichuraiana | Rw2G036270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 27 |
| Acc36I | ACCTGC | 1 cut(s) | 469 |
| Acc65I | GGTACC | 1 cut(s) | 1172 |
| AccB1I | GGYRCC | 1 cut(s) | 1172 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1199 |
| AciI | CCGC | 2 cut(s) | 44, 684 |
| AclWI | GGATC | 5 cut(s) | 153, 166, 721, 848, 861 |
| AcuI | CTGAAG | 2 cut(s) | 602, 879 |
| AfaI | GTAC | 4 cut(s) | 552, 681, 742, 1174 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 428, 673, 1199 |
| AgsI | TTSAA | 7 cut(s) | 34, 403, 464, 765, 866, 951, 1020 |
| AjnI | CCWGG | 5 cut(s) | 78, 115, 421, 427, 1113 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 295, 327 |
| AleI | CACNNNNGTG | 1 cut(s) | 394 |
| AluBI | AGCT | 8 cut(s) | 23, 174, 188, 297, 547, 583, 658, 1213 |
| AluI | AGCT | 8 cut(s) | 23, 174, 188, 297, 547, 583, 658, 1213 |
| Alw21I | GWGCWC | 1 cut(s) | 176 |
| Alw26I | GTCTC | 3 cut(s) | 58, 354, 829 |
| AlwI | GGATC | 5 cut(s) | 153, 166, 721, 848, 861 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 499 |
| Ama87I | CYCGRG | 1 cut(s) | 1010 |
| AoxI | GGCC | 6 cut(s) | 10, 54, 195, 238, 258, 688 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 310, 870, 946 |
| Asp718I | GGTACC | 1 cut(s) | 1172 |
| AspLEI | GCGC | 1 cut(s) | 28 |
| AspS9I | GGNCC | 6 cut(s) | 11, 82, 195, 238, 259, 425 |
| AsuC2I | CCSGG | 3 cut(s) | 753, 1011, 1012 |
| AsuHPI | GGTGA | 5 cut(s) | 163, 268, 426, 432, 438 |
| AvaI | CYCGRG | 1 cut(s) | 1010 |
| AvaII | GGWCC | 2 cut(s) | 82, 425 |
| BamHI | GGATCC | 2 cut(s) | 158, 853 |
| BanI | GGYRCC | 1 cut(s) | 1172 |
| BanII | GRGCYC | 1 cut(s) | 176 |
| BbsI | GAAGAC | 1 cut(s) | 452 |
| Bbv12I | GWGCWC | 1 cut(s) | 176 |
| BccI | CCATC | 5 cut(s) | 148, 170, 667, 1093, 1201 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 1238 |
| BciT130I | CCWGG | 5 cut(s) | 80, 117, 423, 429, 1115 |
| BclI | TGATCA | 1 cut(s) | 1146 |
| BcnI | CCSGG | 3 cut(s) | 753, 1011, 1012 |
| BcoDI | GTCTC | 3 cut(s) | 58, 354, 829 |
| BfaI | CTAG | 1 cut(s) | 983 |
| BfmI | CTRYAG | 4 cut(s) | 18, 38, 584, 1244 |
| BfuAI | ACCTGC | 1 cut(s) | 469 |
| BglII | AGATCT | 1 cut(s) | 868 |
| Bme1390I | CCNGG | 8 cut(s) | 80, 117, 423, 429, 753, 1011, 1012, 1115 |
| Bme18I | GGWCC | 2 cut(s) | 82, 425 |
| BmeT110I | CYCGRG | 1 cut(s) | 1010 |
| BmgT120I | GGNCC | 6 cut(s) | 11, 82, 195, 238, 259, 425 |
| BmiI | GGNNCC | 5 cut(s) | 91, 160, 196, 855, 1174 |
| BmrFI | CCNGG | 8 cut(s) | 80, 117, 423, 429, 753, 1011, 1012, 1115 |
| BmsI | GCATC | 5 cut(s) | 363, 607, 715, 743, 1006 |
| BpiI | GAAGAC | 1 cut(s) | 452 |
| BpuMI | CCSGG | 3 cut(s) | 753, 1011, 1012 |
| BsaJI | CCNNGG | 6 cut(s) | 85, 116, 668, 769, 963, 1010 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1019, 1049 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 428, 673, 1199 |
| Bse1I | ACTGG | 3 cut(s) | 504, 1166, 1234 |
| Bse3DI | GCAATG | 3 cut(s) | 150, 198, 375 |
| BseBI | CCWGG | 5 cut(s) | 80, 117, 423, 429, 1115 |
| BseDI | CCNNGG | 6 cut(s) | 85, 116, 668, 769, 963, 1010 |
| BseGI | GGATG | 4 cut(s) | 574, 678, 973, 1087 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 428, 673, 1199 |
| BseMI | GCAATG | 3 cut(s) | 150, 198, 375 |
| BseMII | CTCAG | 4 cut(s) | 347, 365, 650, 842 |
| BseNI | ACTGG | 3 cut(s) | 504, 1166, 1234 |
| BseRI | GAGGAG | 1 cut(s) | 1040 |
| BsgI | GTGCAG | 2 cut(s) | 267, 1224 |
| BshFI | GGCC | 6 cut(s) | 12, 56, 197, 240, 260, 690 |
| BshNI | GGYRCC | 1 cut(s) | 1172 |
| BsiHKAI | GWGCWC | 1 cut(s) | 176 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1010 |
| BsiSI | CCGG | 2 cut(s) | 752, 1011 |
| BslFI | GGGAC | 1 cut(s) | 585 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 428, 673, 1199 |
| BsmAI | GTCTC | 3 cut(s) | 58, 354, 829 |
| BsmFI | GGGAC | 1 cut(s) | 585 |
| BsnI | GGCC | 6 cut(s) | 12, 56, 197, 240, 260, 690 |
| BsoBI | CYCGRG | 1 cut(s) | 1010 |
| Bsp1286I | GDGCHC | 1 cut(s) | 176 |
| Bsp1407I | TGTACA | 1 cut(s) | 550 |
| Bsp143I | GATC | 6 cut(s) | 158, 713, 853, 868, 1060, 1146 |
| BspACI | CCGC | 2 cut(s) | 44, 684 |
| BspANI | GGCC | 6 cut(s) | 12, 56, 197, 240, 260, 690 |
| BspCNI | CTCAG | 4 cut(s) | 346, 364, 651, 841 |
| BspLI | GGNNCC | 5 cut(s) | 91, 160, 196, 855, 1174 |
| BspMAI | CTGCAG | 4 cut(s) | 22, 42, 588, 1248 |
| BspMI | ACCTGC | 1 cut(s) | 469 |
| BspPI | GGATC | 5 cut(s) | 153, 166, 721, 848, 861 |
| BspT107I | GGYRCC | 1 cut(s) | 1172 |
| BsrDI | GCAATG | 3 cut(s) | 150, 198, 375 |
| BsrGI | TGTACA | 1 cut(s) | 550 |
| BsrI | ACTGG | 3 cut(s) | 504, 1166, 1234 |
| BssECI | CCNNGG | 6 cut(s) | 85, 116, 668, 769, 963, 1010 |
| BssMI | GATC | 6 cut(s) | 158, 713, 853, 868, 1060, 1146 |
| BssT1I | CCWWGG | 4 cut(s) | 85, 668, 769, 963 |
| Bst2UI | CCWGG | 5 cut(s) | 80, 117, 423, 429, 1115 |
| Bst4CI | ACNGT | 3 cut(s) | 107, 255, 396 |
| Bst6I | CTCTTC | 1 cut(s) | 797 |
| BstAUI | TGTACA | 1 cut(s) | 550 |
| BstC8I | GCNNGC | 7 cut(s) | 176, 299, 366, 414, 688, 848, 922 |
| BstDEI | CTNAG | 6 cut(s) | 245, 333, 351, 659, 701, 828 |
| BstF5I | GGATG | 4 cut(s) | 574, 678, 973, 1087 |
| BstHHI | GCGC | 1 cut(s) | 28 |
| BstKTI | GATC | 6 cut(s) | 161, 716, 856, 871, 1063, 1149 |
| BstMAI | GTCTC | 3 cut(s) | 58, 354, 829 |
| BstMBI | GATC | 6 cut(s) | 158, 713, 853, 868, 1060, 1146 |
| BstNI | CCWGG | 5 cut(s) | 80, 117, 423, 429, 1115 |
| BstNSI | RCATGY | 1 cut(s) | 924 |
| BstSCI | CCNGG | 8 cut(s) | 78, 115, 421, 427, 751, 1009, 1010, 1113 |
| BstSFI | CTRYAG | 4 cut(s) | 18, 38, 584, 1244 |
| BstV2I | GAAGAC | 1 cut(s) | 452 |
| BstX2I | RGATCY | 3 cut(s) | 158, 853, 868 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 797 |
| BstYI | RGATCY | 3 cut(s) | 158, 853, 868 |
| BsuRI | GGCC | 6 cut(s) | 12, 56, 197, 240, 260, 690 |
| BtsCI | GGATG | 4 cut(s) | 574, 678, 973, 1087 |
| BtsIMutI | CAGTG | 1 cut(s) | 401 |
| BveI | ACCTGC | 1 cut(s) | 469 |
| Cac8I | GCNNGC | 7 cut(s) | 176, 299, 366, 414, 688, 848, 922 |
| CaiI | CAGNNNCTG | 1 cut(s) | 499 |
| CfoI | GCGC | 1 cut(s) | 28 |
| Cfr13I | GGNCC | 6 cut(s) | 11, 82, 195, 238, 259, 425 |
| Cfr9I | CCCGGG | 1 cut(s) | 1010 |
| CseI | GACGC | 2 cut(s) | 446, 1102 |
| Csp6I | GTAC | 4 cut(s) | 551, 680, 741, 1173 |
| CviAII | CATG | 1 cut(s) | 921 |
| CviQI | GTAC | 4 cut(s) | 551, 680, 741, 1173 |
| DdeI | CTNAG | 6 cut(s) | 245, 333, 351, 659, 701, 828 |
| DpnI | GATC | 6 cut(s) | 160, 715, 855, 870, 1062, 1148 |
| DpnII | GATC | 6 cut(s) | 158, 713, 853, 868, 1060, 1146 |
| Eam1104I | CTCTTC | 1 cut(s) | 797 |
| EarI | CTCTTC | 1 cut(s) | 797 |
| Ecl136II | GAGCTC | 1 cut(s) | 174 |
| Eco130I | CCWWGG | 4 cut(s) | 85, 668, 769, 963 |
| Eco24I | GRGCYC | 1 cut(s) | 176 |
| Eco47I | GGWCC | 2 cut(s) | 82, 425 |
| Eco53kI | GAGCTC | 1 cut(s) | 174 |
| Eco57I | CTGAAG | 2 cut(s) | 602, 879 |
| Eco88I | CYCGRG | 1 cut(s) | 1010 |
| EcoICRI | GAGCTC | 1 cut(s) | 174 |
| EcoRII | CCWGG | 5 cut(s) | 78, 115, 421, 427, 1113 |
| EcoT14I | CCWWGG | 4 cut(s) | 85, 668, 769, 963 |
| EcoT22I | ATGCAT | 1 cut(s) | 922 |
| EcoT38I | GRGCYC | 1 cut(s) | 176 |
| ErhI | CCWWGG | 4 cut(s) | 85, 668, 769, 963 |
| FaeI | CATG | 1 cut(s) | 924 |
| FaiI | YATR | 8 cut(s) | 326, 471, 527, 916, 918, 922, 939, 1068 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 295, 327 |
| FaqI | GGGAC | 1 cut(s) | 585 |
| FatI | CATG | 1 cut(s) | 920 |
| FauI | CCCGC | 1 cut(s) | 691 |
| FauNDI | CATATG | 1 cut(s) | 916 |
| FbaI | TGATCA | 1 cut(s) | 1146 |
| FokI | GGATG | 4 cut(s) | 561, 685, 980, 1094 |
| FriOI | GRGCYC | 1 cut(s) | 176 |
| FspBI | CTAG | 1 cut(s) | 983 |
| FspI | TGCGCA | 1 cut(s) | 27 |
| GlaI | GCGC | 1 cut(s) | 27 |
| HaeIII | GGCC | 6 cut(s) | 12, 56, 197, 240, 260, 690 |
| HapII | CCGG | 2 cut(s) | 752, 1011 |
| HgaI | GACGC | 2 cut(s) | 446, 1102 |
| HhaI | GCGC | 1 cut(s) | 28 |
| Hin1II | CATG | 1 cut(s) | 924 |
| Hin6I | GCGC | 1 cut(s) | 26 |
| HinP1I | GCGC | 1 cut(s) | 26 |
| HinfI | GANTC | 5 cut(s) | 836, 902, 959, 1103, 1255 |
| HpaII | CCGG | 2 cut(s) | 752, 1011 |
| HphI | GGTGA | 5 cut(s) | 163, 268, 426, 432, 438 |
| Hpy166II | GTNNAC | 1 cut(s) | 434 |
| Hpy188I | TCNGA | 3 cut(s) | 294, 354, 1002 |
| Hpy188III | TCNNGA | 2 cut(s) | 857, 983 |
| Hpy8I | GTNNAC | 1 cut(s) | 434 |
| Hpy99I | CGWCG | 1 cut(s) | 1111 |
| HpyAV | CCTTC | 3 cut(s) | 447, 453, 459 |
| HpyCH4III | ACNGT | 3 cut(s) | 107, 255, 396 |
| HpyF3I | CTNAG | 6 cut(s) | 245, 333, 351, 659, 701, 828 |
| Hsp92II | CATG | 1 cut(s) | 924 |
| HspAI | GCGC | 1 cut(s) | 26 |
| KpnI | GGTACC | 1 cut(s) | 1176 |
| Ksp22I | TGATCA | 1 cut(s) | 1146 |
| Kzo9I | GATC | 6 cut(s) | 158, 713, 853, 868, 1060, 1146 |
| LweI | GCATC | 5 cut(s) | 363, 607, 715, 743, 1006 |
| MaeI | CTAG | 1 cut(s) | 983 |
| MaeIII | GTNAC | 1 cut(s) | 907 |
| MalI | GATC | 6 cut(s) | 160, 715, 855, 870, 1062, 1148 |
| MboI | GATC | 6 cut(s) | 158, 713, 853, 868, 1060, 1146 |
| MboII | GAAGA | 6 cut(s) | 303, 452, 814, 863, 878, 939 |
| MflI | RGATCY | 3 cut(s) | 158, 853, 868 |
| MhlI | GDGCHC | 1 cut(s) | 176 |
| MluCI | AATT | 9 cut(s) | 29, 95, 109, 166, 379, 417, 925, 991, 1005 |
| MlyI | GAGTC | 2 cut(s) | 968, 1249 |
| MnlI | CCTC | 6 cut(s) | 67, 289, 549, 749, 1018, 1023 |
| Mph1103I | ATGCAT | 1 cut(s) | 922 |
| MroXI | GAANNNNTTC | 3 cut(s) | 310, 870, 946 |
| MseI | TTAA | 2 cut(s) | 707, 1264 |
| MslI | CAYNNNNRTG | 3 cut(s) | 394, 723, 919 |
| MspA1I | CMGCKG | 4 cut(s) | 23, 583, 658, 1213 |
| MspI | CCGG | 2 cut(s) | 752, 1011 |
| MspR9I | CCNGG | 8 cut(s) | 80, 117, 423, 429, 753, 1011, 1012, 1115 |
| MvaI | CCWGG | 5 cut(s) | 80, 117, 423, 429, 1115 |
| NciI | CCSGG | 3 cut(s) | 753, 1011, 1012 |
| NdeI | CATATG | 1 cut(s) | 916 |
| NdeII | GATC | 6 cut(s) | 158, 713, 853, 868, 1060, 1146 |
| NlaIII | CATG | 1 cut(s) | 924 |
| NlaIV | GGNNCC | 5 cut(s) | 91, 160, 196, 855, 1174 |
| NmeAIII | GCCGAG | 1 cut(s) | 87 |
| NmuCI | GTSAC | 1 cut(s) | 907 |
| NsbI | TGCGCA | 1 cut(s) | 27 |
| NsiI | ATGCAT | 1 cut(s) | 922 |
| NspI | RCATGY | 1 cut(s) | 924 |
| OliI | CACNNNNGTG | 1 cut(s) | 394 |
| PaeI | GCATGC | 1 cut(s) | 924 |
| PdmI | GAANNNNTTC | 3 cut(s) | 310, 870, 946 |
| PfeI | GAWTC | 3 cut(s) | 836, 902, 1103 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1199 |
| PleI | GAGTC | 2 cut(s) | 967, 1249 |
| PpsI | GAGTC | 2 cut(s) | 967, 1249 |
| Psp124BI | GAGCTC | 1 cut(s) | 176 |
| Psp6I | CCWGG | 5 cut(s) | 78, 115, 421, 427, 1113 |
| PspGI | CCWGG | 5 cut(s) | 78, 115, 421, 427, 1113 |
| PspN4I | GGNNCC | 5 cut(s) | 91, 160, 196, 855, 1174 |
| PspPI | GGNCC | 6 cut(s) | 11, 82, 195, 238, 259, 425 |
| PstI | CTGCAG | 4 cut(s) | 22, 42, 588, 1248 |
| PstNI | CAGNNNCTG | 1 cut(s) | 499 |
| PsuI | RGATCY | 3 cut(s) | 158, 853, 868 |
| PvuII | CAGCTG | 4 cut(s) | 23, 583, 658, 1213 |
| RsaI | GTAC | 4 cut(s) | 552, 681, 742, 1174 |
| RsaNI | GTAC | 4 cut(s) | 551, 680, 741, 1173 |
| RseI | CAYNNNNRTG | 3 cut(s) | 394, 723, 919 |
| SacI | GAGCTC | 1 cut(s) | 176 |
| SaqAI | TTAA | 2 cut(s) | 707, 1264 |
| Sau3AI | GATC | 6 cut(s) | 158, 713, 853, 868, 1060, 1146 |
| Sau96I | GGNCC | 6 cut(s) | 11, 82, 195, 238, 259, 425 |
| SchI | GAGTC | 2 cut(s) | 968, 1249 |
| ScrFI | CCNGG | 8 cut(s) | 80, 117, 423, 429, 753, 1011, 1012, 1115 |
| SduI | GDGCHC | 1 cut(s) | 176 |
| SfaNI | GCATC | 5 cut(s) | 363, 607, 715, 743, 1006 |
| SfcI | CTRYAG | 4 cut(s) | 18, 38, 584, 1244 |
| SinI | GGWCC | 2 cut(s) | 82, 425 |
| SmaI | CCCGGG | 1 cut(s) | 1012 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 394, 723, 919 |
| SphI | GCATGC | 1 cut(s) | 924 |
| Sse9I | AATT | 9 cut(s) | 29, 95, 109, 166, 379, 417, 925, 991, 1005 |
| SsiI | CCGC | 2 cut(s) | 44, 684 |
| SspMI | CTAG | 1 cut(s) | 983 |
| SstI | GAGCTC | 1 cut(s) | 176 |
| StyD4I | CCNGG | 8 cut(s) | 78, 115, 421, 427, 751, 1009, 1010, 1113 |
| StyI | CCWWGG | 4 cut(s) | 85, 668, 769, 963 |
| TaaI | ACNGT | 3 cut(s) | 107, 255, 396 |
| TaqI | TCGA | 1 cut(s) | 1109 |
| TasI | AATT | 9 cut(s) | 29, 95, 109, 166, 379, 417, 925, 991, 1005 |
| TatI | WGTACW | 1 cut(s) | 550 |
| TauI | GCSGC | 1 cut(s) | 46 |
| TfiI | GAWTC | 3 cut(s) | 836, 902, 1103 |
| Tru1I | TTAA | 2 cut(s) | 707, 1264 |
| Tru9I | TTAA | 2 cut(s) | 707, 1264 |
| TscAI | CASTG | 1 cut(s) | 401 |
| TseFI | GTSAC | 1 cut(s) | 907 |
| Tsp45I | GTSAC | 1 cut(s) | 907 |
| TspDTI | ATGAA | 3 cut(s) | 89, 341, 886 |
| TspGWI | ACGGA | 1 cut(s) | 1105 |
| TspMI | CCCGGG | 1 cut(s) | 1010 |
| TspRI | CASTG | 1 cut(s) | 401 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1199 |
| VpaK11BI | GGWCC | 2 cut(s) | 82, 425 |
| XbaI | TCTAGA | 1 cut(s) | 982 |
| XceI | RCATGY | 1 cut(s) | 924 |
| XmaI | CCCGGG | 1 cut(s) | 1010 |
| XmnI | GAANNNNTTC | 3 cut(s) | 310, 870, 946 |
| XspI | CTAG | 1 cut(s) | 983 |
| Zsp2I | ATGCAT | 1 cut(s) | 922 |