Rorug02G0390900

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010142
Physical Location & Seq
Forward (+)
49988493 .. 49993259
4767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0390900.1

Sequence Viewer

Length: 3003 bp
ATGGCCGACGATGCTTCAGAACTCGATATCGGGTCGGAGGGTAGTGACGCAATTGAAACTAAATCGGCCAAGTTTGCAACCGAATTTAAGAAGTCTTTTGATACTTCCAAAGGTACACTTCAATGCTCTGTGGTCTGCCGGTTGACAAAGAAAAATGAACCGCAAGGAGAATGCATATTAGGGCCGCATTATCGCGCGGGTATGCCATTGGCCATTAATGAGGTATTAGAGAGTTCTTTAGTGGACACTTCTTGTTTGGCTCATGGGGCTAGTTGGTCCACCTGGAGCATTGAGTTGAAGCACCCGCGAGTCTGGCCAAAACTGACACCTGAATGGACGAAGTGGGTGCCAAGGATGGAGCACTTCTTCAGCCAAGAGTGGAAAAAATACGGAATTTATGACAGCATAAAGATGACTGAACAAGAGATTCACATGGATCGGTCTCTTCTTGCGGCTGCCTTATGTTTTTGGTCGTCTGCTACCAACACCATGAACTTACACCTCGGGCCAATGACTCCAACCTTGTTAGACATGGCTGCAATATTTGGGTTCCGGCCGAATGGGGTGGAGATCTGTGCATCGGCCGAATTCCCTTCATCTTTTCATGCTAGTATGAAACCTCAAGTAACCAAGGATGATAAGAAAGCTAAGGAAGATGCAGACGCCAAAGCAAAGAAATTGCTTAACTACAGTACCTTCTATGCTGAACATGCAGTGAATGAAAGTGTGTCAGAAACTAGGAGAAAACCGCCCAAACAATATGAACACGCCGCCTTTCTCCTCTATTGGCTCTGCAAGTTTGTGTTTTGTTGCAAGTCGAATAAGTGTATTTTCGAATTCGCTGGAATTGCGGAAGCTCTCAGTTTGGGTACTCCTCTAGCTCTTGGCCCATTTGTTCTTGCTTATGTGTATCGTACCTTGCGCAACATAGTGACTTGCAACATGAACTTGGACATCGGAGGACCATTATGGATGTTTCAAATGTGGTTGCAAACTTATTTCCGTGAACTTCGGCCATCATGCCCTCCTTTTGATTTGACAACGACTCTTGGCCGACAAATTGCATCTCTTGGTCCTTGTTCACATTCGGCCGGTGAGTGTTTTGATTTCCTTTTTTCGAAAAGAAGTATGTCCAGGGACGAGTTTGCCATTTGTTACAGCCGAGACTATCCTTCTTGTCTCGCGGTTGACATAGCCAAAACGTGGGAGAAAACCTTGGATTTGGATGTGATGCTGTCCTGGGGGAGTATTCTGATATCTCGGGATCTAAATTATGGTCTTAAAGGTACTTTGGGTCGGTCAGGTGTTGAGGTTTATCTACCCAACTTCGTTGCGCGACAACTTGGTTTTATACAAAGTTGTCCAGCCTTATTCCTGATGTCGCACAACCGCTTCTCCTCATGGAGAGACAGATTTACAGACACCGAGCAGTGTTTGGCTGTTACTCTCTACTACCGGACTCAGTTTGGCAAGTTTGAGAGGTCTGGCCTTGAATCCCGTCTTCCTGACCATAGGGCTACCCCAGATTTCCAAACTTGGTGGTCAACTTTTATCAAGAGAAATATCGGTGAAGATTTGATTGAGACCAAGCGGGTTGCCTTGCAGGGGCTCTTAGTTTCGTTTGTACCCAAAAAGTGTGATAGTAAAAAGAAAGTATCGAGTTCCAGACTGAAGACAACCAAAGAATCCTCTAAGCAAGGAAAAACAATGAGGAAACGTGCCTCAACGTCTAGGCTAGCTCCAGCTACCAAGAAATCAAAGGACTCATCTGATGTAGTGGAGAATTCGATCGCGAGCCCGACCAATATTATGGCTAGAGAGGATACATTTTTTGAGGCTAACATGGATGATGACCAGAATGCTTCAGCCGAACAACAGAATGTGTCTGAAAACGAGGATGTGTCTGGTATTGGTGGTGGGTTAGACGATAGCGTAGAGTTGGCCGACAGCGAAAGTTTCTTTGAAGAAAATCCCTTAGAGAACGATGAGTATGAGAGAGATGGCCGTATTGATCACTCTTTGCCTCCACCTGAGAGCTCCATGGTTGAGATCGACATGGACGATTTGGGTGAGACTCAACTTCCTATTGCTTCGTGCATCGGCCAACAACTTGCACACTTAACTAACTCTGCCCAGGATGCTGAGGATACCGGTGCACTTAGCCGAGAAATGTTGCCCAACCTCCAAACACTTGTCCAGGCAGGAGAACGTCGAAGTAGTACGACCCTGGAGCTAGCTTCTCTCAACCAAAATGAAGCACACCCTCCTATGTTCGGCATACTCACTTCTCCTCCGACCGAAGGAATGTCCCACAGTGAGCAAGCTATCGTTTGCGCTCCATCTTCAGCCGAACTTGTGGACCGTACGGCGGGCGATCTCGGTTTAGAGCTGCTTCATTTTCTAGATACTCTAGATAACACCGCGAGCCCCGTAGAGGAAAAACTTGAGACAACAGAAACTAAAAGGGCGCTTGAGACGGTCAGACAGTTTTTTGGTTGTGACGTGAGGACAGTGACCGAGGCTAGTTTTCTTGCTATCAAGGACGCGGTTGAAGTACTTGTTTCGGCCAACCATTTATCTCAGGAAGAGGCTTATGAAGTTCATGCTCGTTTGGCTGTTGTGAATTTTAGCCTCTCTCCTTGTTTAGAAGCCCAAAAAGAGTTTGAAAACGGCGAGAAGTTGATCAGTGAGTATGAAGACATTCGCCAGTCCACCGATCTCGGCCAACTCCACAAATTGAAGGCTTCTTTGGACAAGGGAAGGCGAAAAGTGCTTGACCTGAAGAAACAGTTGGCTGAAGCTGAAGAGCAAGTCGAAGTCACTTCGGCTGCCATCCGGACCATTGTTCCCCAACAAGACCTTACCAGGTATGGCATGATTTTGTCATCGGTCAAGTCGTATAACAAGAAAAGGGGCATCTTGAAAAGAAAGGTCGAACAAGGTATGCATGACTTAGAAAAGGTTAAGGAGGTTCTTCGGTCTCTTCTACCTACTGATTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000125 GO:0000428 GO:0001085 GO:0001101 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010104 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010646 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0023051 GO:0023052 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032870 GO:0032991 GO:0033276 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070297 GO:0070461 GO:0070887 GO:0070897 GO:0071229 GO:0071310 GO:0071368 GO:0071395 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TFIID_20kDa

Protein Analysis

1000

Amino Acids

112.0

Weight (kDa)

5.45

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 131 - 514 3.1e-41 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17440 AT1G17440
fragaria_vesca FvH4_6g34640 FvH4_6g34640
malus_domestica MD09G1184100.v1.1 MD17G1168400.v1.1
prunus_persica Prupe.3G042400_v2.0.a1
pyrus_communis pycom09g10180 pycom17g16450
rosa_chinensis RchiOBHm_Chr2g0145171
rosa_laevigata RLG00000020131
rosa_multiflora Rmu_sc0002506.1_g000036
rosa_roxburghii Rroxscaffold_2G00100820
rosa_rugosa Rorug02G0390800 Rorug02G0390800 Rorug02G0390900
rosa_samantha Rh2AG443500 Rh2BG454500 Rh2CG430500 Rh2DG464400
rosa_wichuraiana Rw2G036270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 923
AccB1I GGYRCC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 1203
AccII CGCG 8 cut(s) 195, 197, 307, 1184, 1336, 1793, 2423, 2546
AccIII TCCGGA 1 cut(s) 2835
AclWI GGATC 2 cut(s) 444, 1272
AcsI RAATTY 6 cut(s) 83, 393, 587, 836, 1783, 2623
AcuI CTGAAG 7 cut(s) 352, 1691, 1848, 2328, 2801, 2817, 2823
AcyI GRCGYC 1 cut(s) 663
AfaI GTAC 9 cut(s) 115, 694, 871, 916, 1288, 1626, 2221, 2365, 2556
AfiI CCNNNNNNNGG 6 cut(s) 1203, 1605, 2273, 2300, 2368, 2434
AgeI ACCGGT 1 cut(s) 2150
AjiI CACGTC 1 cut(s) 2503
AjnI CCWGG 7 cut(s) 281, 1133, 1238, 2133, 2196, 2226, 2864
AjuI GAANNNNNNNTTGG 4 cut(s) 2732, 2764, 2774, 2806
Alw21I GWGCWC 3 cut(s) 363, 2039, 2158
Alw26I GTCTC 9 cut(s) 447, 1158, 1184, 1401, 1577, 2066, 2441, 2468, 2985
Alw44I GTGCAC 1 cut(s) 2154
AlwI GGATC 2 cut(s) 444, 1272
Ama87I CYCGRG 2 cut(s) 503, 1260
Aor13HI TCCGGA 1 cut(s) 2835
ApaLI GTGCAC 1 cut(s) 2154
ApeKI GCWGC 4 cut(s) 455, 536, 2389, 2828
ApoI RAATTY 6 cut(s) 83, 393, 587, 836, 1783, 2623
AseI ATTAAT 1 cut(s) 216
AsiGI ACCGGT 1 cut(s) 2150
Asp700I GAANNNNTTC 1 cut(s) 2700
AspLEI GCGC 5 cut(s) 197, 924, 1336, 2336, 2470
AspS9I GGNCC 8 cut(s) 182, 276, 506, 887, 962, 1073, 2359, 2838
AsuHPI GGTGA 3 cut(s) 1106, 1580, 2081
AsuII TTCGAA 2 cut(s) 834, 1118
AsuNHI GCTAGC 2 cut(s) 1735, 2233
AvaI CYCGRG 2 cut(s) 503, 1260
AvaII GGWCC 5 cut(s) 276, 962, 1073, 2359, 2838
BaeGI GKGCMC 1 cut(s) 2158
BaeI ACNNNNGTAYC 2 cut(s) 676, 709
BalI TGGCCA 2 cut(s) 212, 316
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 4 cut(s) 1611, 1799, 2039, 2429
BbsI GAAGAC 3 cut(s) 1493, 1679, 2703
Bbv12I GWGCWC 3 cut(s) 363, 2039, 2158
BbvCI CCTCAGC 1 cut(s) 2142
BbvI GCAGC 4 cut(s) 442, 523, 2376, 2815
BccI CCATC 5 cut(s) 349, 1024, 1994, 2347, 2840
BceAI ACGGC 3 cut(s) 1989, 2382, 2686
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BciT130I CCWGG 7 cut(s) 283, 1135, 1240, 2135, 2198, 2228, 2866
BciVI GTATCC 2 cut(s) 1816, 2140
BclI TGATCA 2 cut(s) 2011, 2682
BcoDI GTCTC 9 cut(s) 447, 1158, 1184, 1401, 1577, 2066, 2441, 2468, 2985
BfmI CTRYAG 1 cut(s) 688
BfoI RGCGCY 1 cut(s) 2471
BfuI GTATCC 2 cut(s) 1816, 2140
BglII AGATCT 1 cut(s) 570
BisI GCNGC 7 cut(s) 185, 453, 456, 537, 771, 2390, 2829
BlsI GCNGC 7 cut(s) 186, 454, 457, 538, 772, 2391, 2830
BmcAI AGTACT 1 cut(s) 2556
Bme1390I CCNGG 7 cut(s) 283, 1135, 1240, 2135, 2198, 2228, 2866
Bme18I GGWCC 5 cut(s) 276, 962, 1073, 2359, 2838
BmeT110I CYCGRG 2 cut(s) 503, 1260
BmgBI CACGTC 1 cut(s) 2503
BmgT120I GGNCC 8 cut(s) 182, 276, 506, 887, 962, 1073, 2359, 2838
BmiI GGNNCC 2 cut(s) 348, 551
BmrFI CCNGG 7 cut(s) 283, 1135, 1240, 2135, 2198, 2228, 2866
BmsI GCATC 7 cut(s) 587, 646, 1073, 1221, 2106, 2128, 2925
BmtI GCTAGC 2 cut(s) 1739, 2237
BpiI GAAGAC 3 cut(s) 1493, 1679, 2703
BpmI CTGGAG 3 cut(s) 304, 1725, 2249
Bpu10I CCTNAGC 2 cut(s) 648, 2142
Bpu14I TTCGAA 2 cut(s) 834, 1118
BpuEI CTTGAG 3 cut(s) 606, 2465, 2492
BsaHI GRCGYC 1 cut(s) 663
BsaI GGTCTC 3 cut(s) 447, 1577, 2985
BsaWI WCCGGW 3 cut(s) 1455, 2150, 2835
BsaXI ACNNNNNCTCC 4 cut(s) 1379, 1409, 2275, 2305
Bsc4I CCNNNNNNNGG 6 cut(s) 1203, 1605, 2273, 2300, 2368, 2434
Bse118I RCCGGY 3 cut(s) 138, 1091, 2150
Bse1I ACTGG 1 cut(s) 2707
BseAI TCCGGA 1 cut(s) 2835
BseBI CCWGG 7 cut(s) 283, 1135, 1240, 2135, 2198, 2228, 2866
BseGI GGATG 8 cut(s) 360, 640, 978, 1231, 1852, 1903, 2143, 2832
BseLI CCNNNNNNNGG 6 cut(s) 1203, 1605, 2273, 2300, 2368, 2434
BseMII CTCAG 5 cut(s) 874, 1475, 2022, 2133, 2594
BseNI ACTGG 1 cut(s) 2707
BseRI GAGGAG 4 cut(s) 770, 864, 1387, 2280
BseSI GKGCMC 1 cut(s) 2158
BseX3I CGGCCG 3 cut(s) 554, 582, 1089
BseXI GCAGC 4 cut(s) 442, 523, 2376, 2815
Bsh1236I CGCG 8 cut(s) 195, 197, 307, 1184, 1336, 1793, 2423, 2546
Bsh1285I CGRYCG 5 cut(s) 557, 585, 1092, 1791, 2298
BshNI GGYRCC 1 cut(s) 346
BshTI ACCGGT 1 cut(s) 2150
BsiEI CGRYCG 5 cut(s) 557, 585, 1092, 1791, 2298
BsiHKAI GWGCWC 3 cut(s) 363, 2039, 2158
BsiHKCI CYCGRG 2 cut(s) 503, 1260
BsiSI CCGG 6 cut(s) 139, 553, 1092, 1456, 2151, 2836
BsiWI CGTACG 1 cut(s) 2363
BslFI GGGAC 2 cut(s) 1151, 2293
BslI CCNNNNNNNGG 6 cut(s) 1203, 1605, 2273, 2300, 2368, 2434
BsmAI GTCTC 9 cut(s) 447, 1158, 1184, 1401, 1577, 2066, 2441, 2468, 2985
BsmBI CGTCTC 1 cut(s) 2468
BsmFI GGGAC 2 cut(s) 1151, 2293
BsmI GAATGC 2 cut(s) 176, 1864
Bso31I GGTCTC 3 cut(s) 447, 1577, 2985
BsoBI CYCGRG 2 cut(s) 503, 1260
Bsp119I TTCGAA 2 cut(s) 834, 1118
Bsp1286I GDGCHC 6 cut(s) 363, 1611, 1799, 2039, 2158, 2429
Bsp13I TCCGGA 1 cut(s) 2835
Bsp143I GATC 9 cut(s) 436, 570, 1264, 1788, 2011, 2049, 2374, 2682, 2716
Bsp19I CCATGG 1 cut(s) 2040
Bsp68I TCGCGA 1 cut(s) 1793
BspCNI CTCAG 5 cut(s) 873, 1474, 2023, 2134, 2593
BspEI TCCGGA 1 cut(s) 2835
BspFNI CGCG 8 cut(s) 195, 197, 307, 1184, 1336, 1793, 2423, 2546
BspLI GGNNCC 2 cut(s) 348, 551
BspOI GCTAGC 2 cut(s) 1739, 2237
BspPI GGATC 2 cut(s) 444, 1272
BspQI GCTCTTC 1 cut(s) 2799
BspT104I TTCGAA 2 cut(s) 834, 1118
BspT107I GGYRCC 1 cut(s) 346
BspTNI GGTCTC 3 cut(s) 447, 1577, 2985
BsrFI RCCGGY 3 cut(s) 138, 1091, 2150
BsrI ACTGG 1 cut(s) 2707
BssAI RCCGGY 3 cut(s) 138, 1091, 2150
BssMI GATC 9 cut(s) 436, 570, 1264, 1788, 2011, 2049, 2374, 2682, 2716
BssNI GRCGYC 1 cut(s) 663
BssT1I CCWWGG 4 cut(s) 350, 630, 1215, 2040
Bst2UI CCWGG 7 cut(s) 283, 1135, 1240, 2135, 2198, 2228, 2866
Bst4CI ACNGT 7 cut(s) 692, 2315, 2363, 2479, 2487, 2512, 2790
Bst6I CTCTTC 4 cut(s) 450, 2580, 2799, 2988
BstACI GRCGYC 1 cut(s) 663
BstBI TTCGAA 2 cut(s) 834, 1118
BstC8I GCNNGC 6 cut(s) 1737, 1795, 2235, 2322, 2371, 2425
BstDSI CCRYGG 1 cut(s) 2040
BstF5I GGATG 8 cut(s) 360, 640, 978, 1231, 1852, 1903, 2143, 2832
BstFNI CGCG 8 cut(s) 195, 197, 307, 1184, 1336, 1793, 2423, 2546
BstH2I RGCGCY 1 cut(s) 2471
BstHHI GCGC 5 cut(s) 197, 924, 1336, 2336, 2470
BstKTI GATC 9 cut(s) 439, 573, 1267, 1791, 2014, 2052, 2377, 2685, 2719
BstMAI GTCTC 9 cut(s) 447, 1158, 1184, 1401, 1577, 2066, 2441, 2468, 2985
BstMBI GATC 9 cut(s) 436, 570, 1264, 1788, 2011, 2049, 2374, 2682, 2716
BstMCI CGRYCG 5 cut(s) 557, 585, 1092, 1791, 2298
BstMWI GCNNNNNNNGC 9 cut(s) 11, 74, 266, 313, 710, 848, 2138, 2612, 2770
BstNI CCWGG 7 cut(s) 283, 1135, 1240, 2135, 2198, 2228, 2866
BstNSI RCATGY 1 cut(s) 713
BstSCI CCNGG 7 cut(s) 281, 1133, 1238, 2133, 2196, 2226, 2864
BstSFI CTRYAG 1 cut(s) 688
BstSLI GKGCMC 1 cut(s) 2158
BstUI CGCG 8 cut(s) 195, 197, 307, 1184, 1336, 1793, 2423, 2546
BstV1I GCAGC 4 cut(s) 442, 523, 2376, 2815
BstV2I GAAGAC 3 cut(s) 1493, 1679, 2703
BstX2I RGATCY 2 cut(s) 570, 1264
BstXI CCANNNNNNTGG 1 cut(s) 1810
BstYI RGATCY 2 cut(s) 570, 1264
BstZI CGGCCG 3 cut(s) 554, 582, 1089
BsuI GTATCC 2 cut(s) 1816, 2140
BtgI CCRYGG 1 cut(s) 2040
BtrI CACGTC 1 cut(s) 2503
BtsCI GGATG 8 cut(s) 360, 640, 978, 1231, 1852, 1903, 2143, 2832
BtsI GCAGTG 2 cut(s) 720, 1436
BtsIMutI CAGTG 5 cut(s) 720, 1436, 2320, 2517, 2692
BtuMI TCGCGA 1 cut(s) 1793
Cac8I GCNNGC 6 cut(s) 1737, 1795, 2235, 2322, 2371, 2425
CfoI GCGC 5 cut(s) 197, 924, 1336, 2336, 2470
Cfr10I RCCGGY 3 cut(s) 138, 1091, 2150
Cfr13I GGNCC 8 cut(s) 182, 276, 506, 887, 962, 1073, 2359, 2838
CseI GACGC 3 cut(s) 56, 671, 2552
CsiI ACCWGGT 1 cut(s) 2864
Csp6I GTAC 9 cut(s) 114, 693, 870, 915, 1287, 1625, 2220, 2364, 2555
CspAI ACCGGT 1 cut(s) 2150
CspCI CAANNNNNGTGG 2 cut(s) 1520, 1555
CviQI GTAC 9 cut(s) 114, 693, 870, 915, 1287, 1625, 2220, 2364, 2555
DpnI GATC 9 cut(s) 438, 572, 1266, 1790, 2013, 2051, 2376, 2684, 2718
DpnII GATC 9 cut(s) 436, 570, 1264, 1788, 2011, 2049, 2374, 2682, 2716
EagI CGGCCG 3 cut(s) 554, 582, 1089
Eam1104I CTCTTC 4 cut(s) 450, 2580, 2799, 2988
EarI CTCTTC 4 cut(s) 450, 2580, 2799, 2988
Ecl136II GAGCTC 1 cut(s) 2037
EclXI CGGCCG 3 cut(s) 554, 582, 1089
Eco130I CCWWGG 4 cut(s) 350, 630, 1215, 2040
Eco24I GRGCYC 4 cut(s) 1611, 1799, 2039, 2429
Eco31I GGTCTC 3 cut(s) 447, 1577, 2985
Eco32I GATATC 2 cut(s) 28, 1257
Eco47I GGWCC 5 cut(s) 276, 962, 1073, 2359, 2838
Eco52I CGGCCG 3 cut(s) 554, 582, 1089
Eco53kI GAGCTC 1 cut(s) 2037
Eco57I CTGAAG 7 cut(s) 352, 1691, 1848, 2328, 2801, 2817, 2823
Eco88I CYCGRG 2 cut(s) 503, 1260
EcoICRI GAGCTC 1 cut(s) 2037
EcoRI GAATTC 3 cut(s) 587, 836, 1783
EcoRII CCWGG 7 cut(s) 281, 1133, 1238, 2133, 2196, 2226, 2864
EcoRV GATATC 2 cut(s) 28, 1257
EcoT14I CCWWGG 4 cut(s) 350, 630, 1215, 2040
EcoT22I ATGCAT 2 cut(s) 176, 2949
EcoT38I GRGCYC 4 cut(s) 1611, 1799, 2039, 2429
ErhI CCWWGG 4 cut(s) 350, 630, 1215, 2040
Esp3I CGTCTC 1 cut(s) 2468
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FaqI GGGAC 2 cut(s) 1151, 2293
FauI CCCGC 4 cut(s) 190, 312, 1584, 2362
FbaI TGATCA 2 cut(s) 2011, 2682
Fnu4HI GCNGC 7 cut(s) 185, 453, 456, 537, 771, 2390, 2829
FokI GGATG 8 cut(s) 367, 647, 985, 1238, 1859, 1910, 2150, 2819
FriOI GRGCYC 4 cut(s) 1611, 1799, 2039, 2429
Fsp4HI GCNGC 7 cut(s) 185, 453, 456, 537, 771, 2390, 2829
FspI TGCGCA 1 cut(s) 923
GlaI GCGC 5 cut(s) 196, 923, 1335, 2335, 2469
GluI GCNGC 7 cut(s) 185, 453, 456, 537, 771, 2390, 2829
GsuI CTGGAG 3 cut(s) 304, 1725, 2249
HaeII RGCGCY 1 cut(s) 2471
HapII CCGG 6 cut(s) 139, 553, 1092, 1456, 2151, 2836
HgaI GACGC 3 cut(s) 56, 671, 2552
HhaI GCGC 5 cut(s) 197, 924, 1336, 2336, 2470
Hin1I GRCGYC 1 cut(s) 663
Hin6I GCGC 5 cut(s) 195, 922, 1334, 2334, 2468
HinP1I GCGC 5 cut(s) 195, 922, 1334, 2334, 2468
HincII GTYRAC 3 cut(s) 144, 1189, 1545
HindII GTYRAC 3 cut(s) 144, 1189, 1545
HpaII CCGG 6 cut(s) 139, 553, 1092, 1456, 2151, 2836
HphI GGTGA 3 cut(s) 1106, 1580, 2081
Hpy188I TCNGA 9 cut(s) 19, 37, 733, 959, 1254, 1771, 1888, 2295, 2483
Hpy99I CGWCG 2 cut(s) 11, 2214
HpyAV CCTTC 6 cut(s) 603, 706, 1182, 2294, 2734, 2754
HpyCH4III ACNGT 7 cut(s) 692, 2315, 2363, 2479, 2487, 2512, 2790
HpyCH4IV ACGT 5 cut(s) 1202, 1717, 1727, 2209, 2502
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 74, 266, 313, 710, 848, 2138, 2612, 2770
HpySE526I ACGT 5 cut(s) 1202, 1717, 1727, 2209, 2502
Hsp92I GRCGYC 1 cut(s) 663
HspAI GCGC 5 cut(s) 195, 922, 1334, 2334, 2468
Kpn2I TCCGGA 1 cut(s) 2835
Ksp22I TGATCA 2 cut(s) 2011, 2682
Kzo9I GATC 9 cut(s) 436, 570, 1264, 1788, 2011, 2049, 2374, 2682, 2716
LguI GCTCTTC 1 cut(s) 2799
LmnI GCTCC 6 cut(s) 285, 358, 1744, 2042, 2230, 2341
Lsp1109I GCAGC 4 cut(s) 442, 523, 2376, 2815
LweI GCATC 7 cut(s) 587, 646, 1073, 1221, 2106, 2128, 2925
MabI ACCWGGT 1 cut(s) 2864
MaeII ACGT 5 cut(s) 1202, 1717, 1727, 2209, 2502
MaeIII GTNAC 8 cut(s) 44, 625, 931, 1154, 1441, 2498, 2512, 2818
MalI GATC 9 cut(s) 438, 572, 1266, 1790, 2013, 2051, 2376, 2684, 2718
MboI GATC 9 cut(s) 436, 570, 1264, 1788, 2011, 2049, 2374, 2682, 2716
MfeI CAATTG 1 cut(s) 51
MflI RGATCY 2 cut(s) 570, 1264
MhlI GDGCHC 6 cut(s) 363, 1611, 1799, 2039, 2158, 2429
MlsI TGGCCA 2 cut(s) 212, 316
MluNI TGGCCA 2 cut(s) 212, 316
MlyI GAGTC 6 cut(s) 318, 508, 1039, 1453, 1757, 2068
MmeI TCCRAC 3 cut(s) 15, 542, 2318
Mox20I TGGCCA 2 cut(s) 212, 316
Mph1103I ATGCAT 2 cut(s) 176, 2949
MroI TCCGGA 1 cut(s) 2835
MroXI GAANNNNTTC 1 cut(s) 2700
MscI TGGCCA 2 cut(s) 212, 316
MseI TTAA 6 cut(s) 87, 216, 684, 1281, 2120, 2964
MslI CAYNNNNRTG 3 cut(s) 121, 331, 410
Msp20I TGGCCA 2 cut(s) 212, 316
MspI CCGG 6 cut(s) 139, 553, 1092, 1456, 2151, 2836
MspR9I CCNGG 7 cut(s) 283, 1135, 1240, 2135, 2198, 2228, 2866
MunI CAATTG 1 cut(s) 51
Mva1269I GAATGC 2 cut(s) 176, 1864
MvaI CCWGG 7 cut(s) 283, 1135, 1240, 2135, 2198, 2228, 2866
MvnI CGCG 8 cut(s) 195, 197, 307, 1184, 1336, 1793, 2423, 2546
MwoI GCNNNNNNNGC 9 cut(s) 11, 74, 266, 313, 710, 848, 2138, 2612, 2770
NcoI CCATGG 1 cut(s) 2040
NdeII GATC 9 cut(s) 436, 570, 1264, 1788, 2011, 2049, 2374, 2682, 2716
NheI GCTAGC 2 cut(s) 1735, 2233
NlaIV GGNNCC 2 cut(s) 348, 551
NmeAIII GCCGAG 3 cut(s) 1187, 2189, 2700
NmuCI GTSAC 5 cut(s) 44, 931, 2498, 2512, 2818
NruI TCGCGA 1 cut(s) 1793
NsbI TGCGCA 1 cut(s) 923
NsiI ATGCAT 2 cut(s) 176, 2949
NspI RCATGY 1 cut(s) 713
NspV TTCGAA 2 cut(s) 834, 1118
PciSI GCTCTTC 1 cut(s) 2799
PcsI WCGNNNNNNNCGW 2 cut(s) 2058, 2894
PctI GAATGC 2 cut(s) 176, 1864
PdmI GAANNNNTTC 1 cut(s) 2700
PfeI GAWTC 4 cut(s) 427, 1493, 1685, 2996
Pfl23II CGTACG 1 cut(s) 2363
PflMI CCANNNNNTGG 1 cut(s) 1203
PinAI ACCGGT 1 cut(s) 2150
PkrI GCNGC 7 cut(s) 186, 454, 457, 538, 772, 2391, 2830
Ple19I CGATCG 1 cut(s) 1791
PleI GAGTC 6 cut(s) 317, 508, 1039, 1453, 1757, 2068
PpsI GAGTC 6 cut(s) 317, 508, 1039, 1453, 1757, 2068
PshBI ATTAAT 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 2039
Psp6I CCWGG 7 cut(s) 281, 1133, 1238, 2133, 2196, 2226, 2864
PspGI CCWGG 7 cut(s) 281, 1133, 1238, 2133, 2196, 2226, 2864
PspLI CGTACG 1 cut(s) 2363
PspN4I GGNNCC 2 cut(s) 348, 551
PspPI GGNCC 8 cut(s) 182, 276, 506, 887, 962, 1073, 2359, 2838
PsuI RGATCY 2 cut(s) 570, 1264
PvuI CGATCG 1 cut(s) 1791
RruI TCGCGA 1 cut(s) 1793
RsaI GTAC 9 cut(s) 115, 694, 871, 916, 1288, 1626, 2221, 2365, 2556
RsaNI GTAC 9 cut(s) 114, 693, 870, 915, 1287, 1625, 2220, 2364, 2555
RseI CAYNNNNRTG 3 cut(s) 121, 331, 410
SacI GAGCTC 1 cut(s) 2039
SapI GCTCTTC 1 cut(s) 2799
SaqAI TTAA 6 cut(s) 87, 216, 684, 1281, 2120, 2964
SatI GCNGC 7 cut(s) 185, 453, 456, 537, 771, 2390, 2829
Sau3AI GATC 9 cut(s) 436, 570, 1264, 1788, 2011, 2049, 2374, 2682, 2716
Sau96I GGNCC 8 cut(s) 182, 276, 506, 887, 962, 1073, 2359, 2838
ScaI AGTACT 1 cut(s) 2556
SchI GAGTC 6 cut(s) 318, 508, 1039, 1453, 1757, 2068
ScrFI CCNGG 7 cut(s) 283, 1135, 1240, 2135, 2198, 2228, 2866
SduI GDGCHC 6 cut(s) 363, 1611, 1799, 2039, 2158, 2429
SexAI ACCWGGT 1 cut(s) 2864
SfaNI GCATC 7 cut(s) 587, 646, 1073, 1221, 2106, 2128, 2925
SfcI CTRYAG 1 cut(s) 688
SfuI TTCGAA 2 cut(s) 834, 1118
SinI GGWCC 5 cut(s) 276, 962, 1073, 2359, 2838
SmiMI CAYNNNNRTG 3 cut(s) 121, 331, 410
SmlI CTYRAG 3 cut(s) 621, 2444, 2471
SmoI CTYRAG 3 cut(s) 621, 2444, 2471
SspI AATATT 2 cut(s) 543, 1807
SstI GAGCTC 1 cut(s) 2039
StyD4I CCNGG 7 cut(s) 281, 1133, 1238, 2133, 2196, 2226, 2864
StyI CCWWGG 4 cut(s) 350, 630, 1215, 2040
TaaI ACNGT 7 cut(s) 692, 2315, 2363, 2479, 2487, 2512, 2790
TaiI ACGT 5 cut(s) 1205, 1720, 1730, 2212, 2505
TaqII GACCGA 6 cut(s) 429, 1287, 2312, 2531, 2878, 2967
TatI WGTACW 1 cut(s) 2554
TauI GCSGC 3 cut(s) 187, 455, 773
TfiI GAWTC 4 cut(s) 427, 1493, 1685, 2996
Tru1I TTAA 6 cut(s) 87, 216, 684, 1281, 2120, 2964
Tru9I TTAA 6 cut(s) 87, 216, 684, 1281, 2120, 2964
TscAI CASTG 5 cut(s) 720, 1436, 2320, 2517, 2692
TseFI GTSAC 5 cut(s) 44, 931, 2498, 2512, 2818
TseI GCWGC 4 cut(s) 455, 536, 2389, 2828
Tsp45I GTSAC 5 cut(s) 44, 931, 2498, 2512, 2818
TspGWI ACGGA 2 cut(s) 405, 992
TspRI CASTG 5 cut(s) 720, 1436, 2320, 2517, 2692
Van91I CCANNNNNTGG 1 cut(s) 1203
VneI GTGCAC 1 cut(s) 2154
VpaK11BI GGWCC 5 cut(s) 276, 962, 1073, 2359, 2838
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 6 cut(s) 83, 393, 587, 836, 1783, 2623
XbaI TCTAGA 2 cut(s) 2401, 2410
XceI RCATGY 1 cut(s) 713
XmnI GAANNNNTTC 1 cut(s) 2700
ZrmI AGTACT 1 cut(s) 2556
Zsp2I ATGCAT 2 cut(s) 176, 2949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.