Rh2BG454500

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010142
Physical Location & Seq
Forward (+)
64340074 .. 64345964
5891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG454500.1

Sequence Viewer

Length: 1506 bp
ATGGCCGAGAGTGGCTCATCTCCATCCCAAAAACCCCCAAACCCCAATAGCATTGAAGCATCAGCAGCAGGCACCCCTAACATTATAATCACCCAAAACCCATCAAACTCCGCCTCAAACCCACCAATCCCATCCCCGCAAACTCCTCAAATCTCATCCCCACCCCTCCCTCCTCTCCCCCAGAACCAACAGCTTATTTCCCCCACCGTCGGATTGGATTACACCCAGAAACCGAATCAGCTGCAGCAGCCATTGGTGCAGCAACAAGTGCAGACTCAGAATGTAAATGTGAACGCCATGTCGAATTTCCAGCTGCAGCAGCAGCAGAGCATGCAGCGATCTCCGTCGATGTCGCGGCTGAACCAAATTCAGCAGCAGCAGAATCAGAACCAGAACCAGAGCCAGCAGCAGCAGCATTTCGGCATGATGAGGCAGCAAAGCAATTTGTATAGCCAGGTCAATTTCGGAGGCTCCGGTGCGATTCAGCAGCAGAACCAGACTCAGCAGCAGCAAATTGGCGGGGGCAACTTGCCCCGAGCTGCCCTGCTTGGCCAGAGTGGCCACTTGCCCATGCTGTCTGGTGCTAACGCAGCTGCGCAATTCAGTATGCAGACGCAGCTGTTGGCTTCGCCGAGACAACAAGGCGGGTTAGTCCAAGGTACCCAATTTAGTTCTCCTGGACAATCTCTACAAGGAACACAAGCAATGGGTATGGGAATGATGAATTCCATTAATTTGACCCCACAACCAAGAGCTAATGGAGCCTTAGCTGCTTATGCTCAGCGATTCAACCAGGGCCAACTTAGACAACAATTGTCCCAGCAAAGTTCGCTCGCCTCTCCGCAAAACTTGCCAAGAACATCCTCACTTGCATTTATGAGCACTCAGCTATCTGGGCTGGCTCAGAATGGACAGCCAGCTATGATACAGAATCCTTTATCACAACAGTGGTTGAAGCAAATGCCAGCAATTTCAGGCCCTGGCTCACCTTCATACCGCCTTCAACAACATAGGCAGCAGGCCATCTTCCAGCAGCAACTGTCTTCACCCACTCAGTTGCATCAACAGCCCATGCCCATGAAACAGCAAAAACAGTTACAGCAACAGCAGCAGCAGCAGCAGCAACAATTGGGGCTTCCTCAACTACAGCATCAACAACAGCAACAGCAGCAGCAAATGCAGCAGCCACTACAACAACAATCACAGCAACAACAGCCCTTCAATCAACAACAGCAGCAGACTTCCCCAAGGATGCCTGTACCCGCAGGCCAGAAATCTCTTAGTTTAACAGGATCACAGCCTGATGCTACTGCATCTGGTACAACTACACCAGGAGGGAGTTCAAGCCAAGGAACAGAAGCAACTAACCAACTTCTTGGGAAGAGAAAGATGCAGGACTTAGTCTCACAGGTTGATTCACAGGGAAGGTTGGATTCTGAAGTTGAAGATCTTCTTTTGGAGATTGCTGATGACTTCATTGATTCAGTGAGGCTTGCTAATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000125 GO:0000428 GO:0001085 GO:0001101 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010104 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010646 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0023051 GO:0023052 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032870 GO:0032991 GO:0033276 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070297 GO:0070461 GO:0070887 GO:0070897 GO:0071229 GO:0071310 GO:0071368 GO:0071395 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TFIID_20kDa

Protein Analysis

501

Amino Acids

54.66

Weight (kDa)

10.12

Isoelectric Point (pI)

79.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIID_20kDa PF03847 460 - 496 1.3e-12 Transcription initiation factor TFIID subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17440 AT1G17440
fragaria_vesca FvH4_6g34640 FvH4_6g34640
malus_domestica MD09G1184100.v1.1 MD17G1168400.v1.1
prunus_persica Prupe.3G042400_v2.0.a1
pyrus_communis pycom09g10180 pycom17g16450
rosa_chinensis RchiOBHm_Chr2g0145171
rosa_laevigata RLG00000020131
rosa_multiflora Rmu_sc0002506.1_g000036
rosa_roxburghii Rroxscaffold_2G00100820
rosa_rugosa Rorug02G0390800 Rorug02G0390800 Rorug02G0390900
rosa_samantha Rh2AG443500 Rh2BG454500 Rh2CG430500 Rh2DG464400
rosa_wichuraiana Rw2G036270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 86
Acc16I TGCGCA 1 cut(s) 597
Acc65I GGTACC 1 cut(s) 659
AccB1I GGYRCC 2 cut(s) 71, 659
AccII CGCG 1 cut(s) 355
AciI CCGC 8 cut(s) 111, 137, 355, 519, 645, 842, 997, 1263
AclWI GGATC 1 cut(s) 1300
AcoI YGGCCR 3 cut(s) 3, 550, 559
AcsI RAATTY 3 cut(s) 304, 366, 724
AcuI CTGAAG 1 cut(s) 1458
AfaI GTAC 3 cut(s) 661, 1260, 1321
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 7 cut(s) 56, 790, 955, 1004, 1222, 1344, 1445
AjnI CCWGG 5 cut(s) 453, 676, 792, 979, 1330
AleI CACNNNNGTG 1 cut(s) 946
Alw21I GWGCWC 1 cut(s) 884
Alw26I GTCTC 2 cut(s) 628, 1408
AlwI GGATC 1 cut(s) 1300
AlwNI CAGNNNCTG 2 cut(s) 980, 1039
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 7 cut(s) 3, 550, 559, 796, 976, 1020, 1267
ApoI RAATTY 3 cut(s) 304, 366, 724
AseI ATTAAT 1 cut(s) 732
Asp700I GAANNNNTTC 1 cut(s) 1449
Asp718I GGTACC 1 cut(s) 659
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 796, 977
AsuHPI GGTGA 3 cut(s) 82, 978, 1038
AvaI CYCGRG 1 cut(s) 534
BalI TGGCCA 2 cut(s) 552, 561
BanI GGYRCC 2 cut(s) 71, 659
BbsI GAAGAC 1 cut(s) 1035
Bbv12I GWGCWC 1 cut(s) 884
BccI CCATC 4 cut(s) 31, 109, 139, 1031
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BciT130I CCWGG 5 cut(s) 455, 678, 794, 981, 1332
BcoDI GTCTC 2 cut(s) 628, 1408
BfmI CTRYAG 3 cut(s) 242, 314, 1145
BglI GCCNNNNNGGC 1 cut(s) 558
BglII AGATCT 1 cut(s) 1447
BlpI GCTNAGC 1 cut(s) 780
Bme1390I CCNGG 5 cut(s) 455, 678, 794, 981, 1332
BmeT110I CYCGRG 1 cut(s) 534
BmgT120I GGNCC 2 cut(s) 796, 977
BmiI GGNNCC 4 cut(s) 73, 472, 661, 763
BmrFI CCNGG 5 cut(s) 455, 678, 794, 981, 1332
BmsI GCATC 7 cut(s) 68, 1069, 1159, 1242, 1294, 1322, 1380
BpiI GAAGAC 1 cut(s) 1035
BplI GAGNNNNNCTC 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 766
Bpu1102I GCTNAGC 1 cut(s) 780
BsaJI CCNNGG 5 cut(s) 655, 793, 979, 1247, 1348
BsaWI WCCGGW 1 cut(s) 473
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 5 cut(s) 455, 678, 794, 981, 1332
BseDI CCNNGG 5 cut(s) 655, 793, 979, 1247, 1348
BseGI GGATG 5 cut(s) 23, 131, 155, 860, 1257
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 6 cut(s) 290, 515, 794, 899, 917, 1067
BseRI GAGGAG 2 cut(s) 135, 162
BseYI CCCAGC 1 cut(s) 819
BsgI GTGCAG 2 cut(s) 278, 290
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 7 cut(s) 5, 552, 561, 798, 978, 1022, 1269
BshNI GGYRCC 2 cut(s) 71, 659
BsiHKAI GWGCWC 1 cut(s) 884
BsiHKCI CYCGRG 1 cut(s) 534
BsiSI CCGG 1 cut(s) 474
BslFI GGGAC 1 cut(s) 802
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 2 cut(s) 628, 1408
BsmFI GGGAC 1 cut(s) 802
BsnI GGCC 7 cut(s) 5, 552, 561, 798, 978, 1022, 1269
BsoBI CYCGRG 1 cut(s) 534
Bsp1286I GDGCHC 1 cut(s) 884
Bsp143I GATC 3 cut(s) 338, 1292, 1447
Bsp1720I GCTNAGC 1 cut(s) 780
BspACI CCGC 8 cut(s) 111, 137, 355, 519, 645, 842, 997, 1263
BspANI GGCC 7 cut(s) 5, 552, 561, 798, 978, 1022, 1269
BspCNI CTCAG 6 cut(s) 289, 514, 793, 898, 916, 1066
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 4 cut(s) 73, 472, 661, 763
BspMAI CTGCAG 2 cut(s) 246, 318
BspPI GGATC 1 cut(s) 1300
BspT107I GGYRCC 2 cut(s) 71, 659
BsrDI GCAATG 1 cut(s) 711
BssECI CCNNGG 5 cut(s) 655, 793, 979, 1247, 1348
BssMI GATC 3 cut(s) 338, 1292, 1447
BssT1I CCWWGG 3 cut(s) 655, 1247, 1348
Bst2UI CCWGG 5 cut(s) 455, 678, 794, 981, 1332
Bst4CI ACNGT 4 cut(s) 208, 948, 1041, 1095
Bst6I CTCTTC 1 cut(s) 1376
BstAPI GCANNNNNTGC 4 cut(s) 268, 331, 850, 1177
BstF5I GGATG 5 cut(s) 23, 131, 155, 860, 1257
BstFNI CGCG 1 cut(s) 355
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 3 cut(s) 341, 1295, 1450
BstMAI GTCTC 2 cut(s) 628, 1408
BstMBI GATC 3 cut(s) 338, 1292, 1447
BstNI CCWGG 5 cut(s) 455, 678, 794, 981, 1332
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 5 cut(s) 453, 676, 792, 979, 1330
BstSFI CTRYAG 3 cut(s) 242, 314, 1145
BstUI CGCG 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 1035
BstX2I RGATCY 1 cut(s) 1447
BstXI CCANNNNNNTGG 1 cut(s) 1376
BstYI RGATCY 1 cut(s) 1447
BsuRI GGCC 7 cut(s) 5, 552, 561, 798, 978, 1022, 1269
BtsCI GGATG 5 cut(s) 23, 131, 155, 860, 1257
BtsIMutI CAGTG 2 cut(s) 953, 1491
CaiI CAGNNNCTG 2 cut(s) 980, 1039
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 2 cut(s) 796, 977
CseI GACGC 1 cut(s) 622
Csp6I GTAC 3 cut(s) 660, 1259, 1320
CviAII CATG 6 cut(s) 298, 331, 424, 571, 1072, 1078
CviQI GTAC 3 cut(s) 660, 1259, 1320
DpnI GATC 3 cut(s) 340, 1294, 1449
DpnII GATC 3 cut(s) 338, 1292, 1447
EaeI YGGCCR 3 cut(s) 3, 550, 559
Eam1104I CTCTTC 1 cut(s) 1376
EarI CTCTTC 1 cut(s) 1376
EciI GGCGGA 1 cut(s) 100
Eco130I CCWWGG 3 cut(s) 655, 1247, 1348
Eco57I CTGAAG 1 cut(s) 1458
Eco88I CYCGRG 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 977
EcoRI GAATTC 1 cut(s) 724
EcoRII CCWGG 5 cut(s) 453, 676, 792, 979, 1330
EcoT14I CCWWGG 3 cut(s) 655, 1247, 1348
ErhI CCWWGG 3 cut(s) 655, 1247, 1348
FaeI CATG 6 cut(s) 301, 334, 427, 574, 1075, 1081
FalI AAGNNNNNCTT 2 cut(s) 1437, 1469
FaqI GGGAC 1 cut(s) 802
FatI CATG 6 cut(s) 297, 330, 423, 570, 1071, 1077
FauI CCCGC 4 cut(s) 144, 512, 638, 1270
FokI GGATG 5 cut(s) 10, 118, 142, 847, 1264
FspI TGCGCA 1 cut(s) 597
GlaI GCGC 1 cut(s) 597
GsaI CCCAGC 1 cut(s) 823
HaeIII GGCC 7 cut(s) 5, 552, 561, 798, 978, 1022, 1269
HapII CCGG 1 cut(s) 474
HgaI GACGC 1 cut(s) 622
HhaI GCGC 1 cut(s) 598
Hin1II CATG 6 cut(s) 301, 334, 427, 574, 1075, 1081
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HpaII CCGG 1 cut(s) 474
HphI GGTGA 3 cut(s) 82, 978, 1038
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 6 cut(s) 212, 279, 387, 467, 906, 1438
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 2 cut(s) 212, 349
HpyAV CCTTC 4 cut(s) 999, 1010, 1228, 1419
HpyCH4III ACNGT 4 cut(s) 208, 948, 1041, 1095
Hsp92II CATG 6 cut(s) 301, 334, 427, 574, 1075, 1081
HspAI GCGC 1 cut(s) 596
KpnI GGTACC 1 cut(s) 663
Kzo9I GATC 3 cut(s) 338, 1292, 1447
LmnI GCTCC 2 cut(s) 476, 761
LweI GCATC 7 cut(s) 68, 1069, 1159, 1242, 1294, 1322, 1380
MaeIII GTNAC 1 cut(s) 1095
MalI GATC 3 cut(s) 340, 1294, 1449
MboI GATC 3 cut(s) 338, 1292, 1447
MboII GAAGA 5 cut(s) 1018, 1035, 1393, 1442, 1457
MfeI CAATTG 2 cut(s) 812, 1127
MflI RGATCY 1 cut(s) 1447
MhlI GDGCHC 1 cut(s) 884
MlsI TGGCCA 2 cut(s) 552, 561
MluNI TGGCCA 2 cut(s) 552, 561
MlyI GAGTC 2 cut(s) 268, 493
MmeI TCCRAC 2 cut(s) 190, 1410
Mox20I TGGCCA 2 cut(s) 552, 561
MroXI GAANNNNTTC 1 cut(s) 1449
MscI TGGCCA 2 cut(s) 552, 561
MseI TTAA 2 cut(s) 732, 1286
MslI CAYNNNNRTG 2 cut(s) 946, 1076
Msp20I TGGCCA 2 cut(s) 552, 561
MspA1I CMGCKG 4 cut(s) 241, 313, 593, 619
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 5 cut(s) 455, 678, 794, 981, 1332
MunI CAATTG 2 cut(s) 812, 1127
MvaI CCWGG 5 cut(s) 455, 678, 794, 981, 1332
MvnI CGCG 1 cut(s) 355
NdeII GATC 3 cut(s) 338, 1292, 1447
NlaIII CATG 6 cut(s) 301, 334, 427, 574, 1075, 1081
NlaIV GGNNCC 4 cut(s) 73, 472, 661, 763
NmeAIII GCCGAG 2 cut(s) 31, 657
NsbI TGCGCA 1 cut(s) 597
NspI RCATGY 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 946
PaeI GCATGC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 1449
PfeI GAWTC 8 cut(s) 235, 382, 481, 786, 931, 1415, 1433, 1481
PflFI GACNNNGTC 1 cut(s) 1400
PfoI TCCNGGA 1 cut(s) 676
PleI GAGTC 2 cut(s) 268, 493
PpsI GAGTC 2 cut(s) 268, 493
PshBI ATTAAT 1 cut(s) 732
PsiI TTATAA 1 cut(s) 86
Psp6I CCWGG 5 cut(s) 453, 676, 792, 979, 1330
PspFI CCCAGC 1 cut(s) 819
PspGI CCWGG 5 cut(s) 453, 676, 792, 979, 1330
PspN4I GGNNCC 4 cut(s) 73, 472, 661, 763
PspPI GGNCC 2 cut(s) 796, 977
PstI CTGCAG 2 cut(s) 246, 318
PstNI CAGNNNCTG 2 cut(s) 980, 1039
PsuI RGATCY 1 cut(s) 1447
PsyI GACNNNGTC 1 cut(s) 1400
PvuII CAGCTG 4 cut(s) 241, 313, 593, 619
RsaI GTAC 3 cut(s) 661, 1260, 1321
RsaNI GTAC 3 cut(s) 660, 1259, 1320
RseI CAYNNNNRTG 2 cut(s) 946, 1076
SaqAI TTAA 2 cut(s) 732, 1286
Sau3AI GATC 3 cut(s) 338, 1292, 1447
Sau96I GGNCC 2 cut(s) 796, 977
SchI GAGTC 2 cut(s) 268, 493
ScrFI CCNGG 5 cut(s) 455, 678, 794, 981, 1332
SduI GDGCHC 1 cut(s) 884
SfaNI GCATC 7 cut(s) 68, 1069, 1159, 1242, 1294, 1322, 1380
SfcI CTRYAG 3 cut(s) 242, 314, 1145
SfiI GGCCNNNNNGGCC 1 cut(s) 558
SmiMI CAYNNNNRTG 2 cut(s) 946, 1076
SphI GCATGC 1 cut(s) 334
SsiI CCGC 8 cut(s) 111, 137, 355, 519, 645, 842, 997, 1263
SspI AATATT 1 cut(s) 1501
StyD4I CCNGG 5 cut(s) 453, 676, 792, 979, 1330
StyI CCWWGG 3 cut(s) 655, 1247, 1348
TaaI ACNGT 4 cut(s) 208, 948, 1041, 1095
TaqI TCGA 2 cut(s) 302, 347
TauI GCSGC 1 cut(s) 358
TfiI GAWTC 8 cut(s) 235, 382, 481, 786, 931, 1415, 1433, 1481
Tru1I TTAA 2 cut(s) 732, 1286
Tru9I TTAA 2 cut(s) 732, 1286
TscAI CASTG 2 cut(s) 953, 1491
TspDTI ATGAA 4 cut(s) 737, 981, 1094, 1465
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 2 cut(s) 953, 1491
Tth111I GACNNNGTC 1 cut(s) 1400
VspI ATTAAT 1 cut(s) 732
XapI RAATTY 3 cut(s) 304, 366, 724
XceI RCATGY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.