Rorug02G0390800

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004044
Physical Location & Seq
Reverse (-)
49943443 .. 49946214
2772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0390800.1

Sequence Viewer

Length: 435 bp
ATGGCGAAAGAAGGTCTAGGGCTGGAAATTACAGAGCTGAGGTTAGGTCTCCCTAGTGGTCCAAGTTTAGTGGACAAAATCAAGGAGAAGAAGAGGGTGTTTTCAGAGATTAATGGGGGGGATGGGAACGGCGCCAACTCTGGTGACCGTGATGACTACCGGAAAGATCAAGCCAAGAGTCAAGTTGTGGGGTGGCCTCCGGTGTGTTCATATCGGAGGAAGGTTAACAGCTTGAGTGAGACTTCGAAAATGTACGTGAAAGTCAGCATGGATGGTGCGCCTTTTCTTCGTAAAATAGACTTGGGCATGCACAATTGCTATGCAGATCTTGCTGTGGCCTTGGAGAAGCTATTTGGTTGTTTTGGTATAGAGTTACTAGCTTGCAATTCCTCCAAAATTTATGTTAATTCGGAGACCTTCTACCATACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000125 GO:0000428 GO:0001085 GO:0001101 GO:0001102 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010104 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010646 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0023051 GO:0023052 GO:0030880 GO:0030914 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032870 GO:0032991 GO:0033276 GO:0033613 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043933 GO:0043966 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070297 GO:0070461 GO:0070887 GO:0070897 GO:0071229 GO:0071310 GO:0071368 GO:0071395 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902493 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TFIID_20kDa

Protein Analysis

144

Amino Acids

15.88

Weight (kDa)

8.31

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 11 - 127 4.9e-24 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AcsI RAATTY 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 254
AluBI AGCT 4 cut(s) 37, 231, 349, 380
AluI AGCT 4 cut(s) 37, 231, 349, 380
Alw26I GTCTC 3 cut(s) 53, 233, 407
AoxI GGCC 2 cut(s) 194, 336
ApoI RAATTY 1 cut(s) 396
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 2 cut(s) 134, 280
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 155
AsuII TTCGAA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 131
BbvCI CCTCAGC 1 cut(s) 38
BccI CCATC 2 cut(s) 116, 266
BceAI ACGGC 1 cut(s) 145
BcoDI GTCTC 3 cut(s) 53, 233, 407
BfaI CTAG 3 cut(s) 17, 54, 377
BfoI RGCGCY 1 cut(s) 135
BglII AGATCT 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 2 cut(s) 53, 407
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 2 cut(s) 159, 199
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 2 cut(s) 127, 277
BseMII CTCAG 1 cut(s) 29
BshFI GGCC 2 cut(s) 196, 338
BshNI GGYRCC 1 cut(s) 131
BsiSI CCGG 2 cut(s) 160, 200
BsmAI GTCTC 3 cut(s) 53, 233, 407
BsnI GGCC 2 cut(s) 196, 338
Bso31I GGTCTC 2 cut(s) 53, 407
Bsp119I TTCGAA 1 cut(s) 245
Bsp143I GATC 2 cut(s) 166, 325
BspANI GGCC 2 cut(s) 196, 338
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 131
BspTNI GGTCTC 2 cut(s) 53, 407
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 2 cut(s) 166, 325
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 329
BstBAI YACGTR 1 cut(s) 256
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 308, 382
BstDEI CTNAG 1 cut(s) 38
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 127, 277
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 2 cut(s) 134, 280
BstKTI GATC 2 cut(s) 169, 328
BstMAI GTCTC 3 cut(s) 53, 233, 407
BstMBI GATC 2 cut(s) 166, 325
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNSI RCATGY 1 cut(s) 310
BstPI GGTNACC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 2 cut(s) 196, 338
BtsCI GGATG 2 cut(s) 127, 277
Cac8I GCNNGC 2 cut(s) 308, 382
CfoI GCGC 2 cut(s) 134, 280
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 253
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 3 cut(s) 268, 307, 432
CviJI RGCY 8 cut(s) 22, 37, 173, 196, 231, 338, 349, 380
CviKI_1 RGCY 8 cut(s) 22, 37, 173, 196, 231, 338, 349, 380
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 38
DinI GGCGCC 1 cut(s) 133
DpnI GATC 2 cut(s) 168, 327
DpnII GATC 2 cut(s) 166, 325
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 339
Eco31I GGTCTC 2 cut(s) 53, 407
Eco47I GGWCC 1 cut(s) 59
Eco91I GGTNACC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 339
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 3 cut(s) 271, 310, 435
FaiI YATR 8 cut(s) 211, 269, 308, 321, 368, 402, 426, 433
FatI CATG 3 cut(s) 267, 306, 431
FokI GGATG 2 cut(s) 134, 284
FspBI CTAG 3 cut(s) 17, 54, 377
GlaI GCGC 2 cut(s) 133, 279
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 2 cut(s) 196, 338
HapII CCGG 2 cut(s) 160, 200
HhaI GCGC 2 cut(s) 134, 280
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 3 cut(s) 271, 310, 435
Hin6I GCGC 2 cut(s) 132, 278
HinP1I GCGC 2 cut(s) 132, 278
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 1 cut(s) 178
HpaI GTTAAC 1 cut(s) 226
HpaII CCGG 2 cut(s) 160, 200
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 73, 226
Hpy188I TCNGA 3 cut(s) 106, 216, 412
Hpy8I GTNNAC 2 cut(s) 73, 226
HpyAV CCTTC 3 cut(s) 5, 214, 427
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 310, 323, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 3 cut(s) 271, 310, 435
HspAI GCGC 2 cut(s) 132, 278
KasI GGCGCC 1 cut(s) 131
KspAI GTTAAC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 166, 325
LpnPI CCDG 4 cut(s) 8, 126, 173, 213
MaeI CTAG 3 cut(s) 17, 54, 377
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 143, 372
MalI GATC 2 cut(s) 168, 327
MboI GATC 2 cut(s) 166, 325
MboII GAAGA 3 cut(s) 100, 103, 278
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 1 cut(s) 325
MluCI AATT 5 cut(s) 27, 313, 385, 396, 406
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 5 cut(s) 33, 87, 207, 210, 400
MseI TTAA 3 cut(s) 111, 225, 405
MspI CCGG 2 cut(s) 160, 200
MunI CAATTG 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 329
NarI GGCGCC 1 cut(s) 132
NdeII GATC 2 cut(s) 166, 325
NlaIII CATG 3 cut(s) 271, 310, 435
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 310
NspV TTCGAA 1 cut(s) 245
PaeI GCATGC 1 cut(s) 310
PleI GAGTC 1 cut(s) 186
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 186
Ppu21I YACGTR 1 cut(s) 256
PshBI ATTAAT 1 cut(s) 111
PspEI GGTNACC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 3 cut(s) 111, 225, 405
Sau3AI GATC 2 cut(s) 166, 325
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 187
SfoI GGCGCC 1 cut(s) 133
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SphI GCATGC 1 cut(s) 310
Sse9I AATT 5 cut(s) 27, 313, 385, 396, 406
SspDI GGCGCC 1 cut(s) 131
SspMI CTAG 3 cut(s) 17, 54, 377
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 245
TasI AATT 5 cut(s) 27, 313, 385, 396, 406
Tru1I TTAA 3 cut(s) 111, 225, 405
Tru9I TTAA 3 cut(s) 111, 225, 405
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 59
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 1 cut(s) 396
XceI RCATGY 1 cut(s) 310
XspI CTAG 3 cut(s) 17, 54, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.