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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G17450 AT1G17450 AT1G17450 AT1G58766 AT1G59077 AT1G59453 AT1G59460 AT1G59470 |
| fragaria_vesca | FvH4_6g34630 FvH4_6g34630 FvH4_6g34630 FvH4_6g34630 FvH4_6g34630 FvH4_6g34630 |
| malus_domestica | MD09G1184300.v1.1 |
| prunus_persica | Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1 |
| pyrus_communis | pycom09g10190 |
| rosa_chinensis | RchiOBHm_Chr2g0145161 |
| rosa_laevigata | RLG00000020130 |
| rosa_multiflora | Rmu_co8516753.1_g000001 Rmu_sc0002506.1_g000034 |
| rosa_roxburghii | Rroxscaffold_2G00100830 |
| rosa_rugosa | Rorug02G0390700 Rorug02G0390800 |
| rosa_samantha | Rh2AG443400 Rh2BG454400 Rh2CG430400 Rh2DG464300 |
| rosa_wichuraiana | Rw2G036260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 982, 1618, 2902 |
| Acc36I | ACCTGC | 5 cut(s) | 831, 982, 1618, 2902, 3473 |
| AccB1I | GGYRCC | 3 cut(s) | 1589, 3243, 4081 |
| AccBSI | CCGCTC | 2 cut(s) | 312, 1708 |
| AccI | GTMKAC | 2 cut(s) | 2998, 4005 |
| AciI | CCGC | 8 cut(s) | 310, 315, 343, 1708, 2706, 3848, 4792, 5473 |
| AcoI | YGGCCR | 1 cut(s) | 4017 |
| AcuI | CTGAAG | 9 cut(s) | 275, 1811, 3141, 3855, 4365, 4455, 4846, 5052, 5238 |
| AcyI | GRCGYC | 2 cut(s) | 150, 183 |
| AdeI | CACNNNGTG | 1 cut(s) | 4640 |
| AflIII | ACRYGT | 5 cut(s) | 961, 3001, 3290, 3323, 5419 |
| AhlI | ACTAGT | 1 cut(s) | 1945 |
| AjiI | CACGTC | 5 cut(s) | 3002, 3326, 4975, 5420, 5673 |
| AjnI | CCWGG | 9 cut(s) | 805, 1501, 2737, 2904, 3561, 4561, 4942, 5074, 5446 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 940, 972, 1506, 1538 |
| AleI | CACNNNNGTG | 1 cut(s) | 1904 |
| Alw21I | GWGCWC | 6 cut(s) | 48, 1574, 1784, 2006, 2820, 5152 |
| Alw26I | GTCTC | 4 cut(s) | 62, 281, 3146, 4890 |
| Alw44I | GTGCAC | 1 cut(s) | 1780 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2198 |
| Ama87I | CYCGRG | 1 cut(s) | 4853 |
| AoxI | GGCC | 5 cut(s) | 77, 295, 1996, 3404, 4017 |
| ApaLI | GTGCAC | 1 cut(s) | 1780 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 506, 538 |
| AseI | ATTAAT | 2 cut(s) | 1440, 3863 |
| AspLEI | GCGC | 2 cut(s) | 2112, 2940 |
| AspS9I | GGNCC | 9 cut(s) | 78, 203, 295, 1996, 2778, 3404, 3745, 4866, 5382 |
| AsuII | TTCGAA | 2 cut(s) | 231, 2479 |
| AvaI | CYCGRG | 1 cut(s) | 4853 |
| AvaII | GGWCC | 5 cut(s) | 203, 2778, 3745, 4866, 5382 |
| BaeGI | GKGCMC | 2 cut(s) | 1784, 1842 |
| BanI | GGYRCC | 3 cut(s) | 1589, 3243, 4081 |
| BanII | GRGCYC | 3 cut(s) | 48, 2820, 3736 |
| BauI | CACGAG | 2 cut(s) | 260, 362 |
| BbsI | GAAGAC | 4 cut(s) | 240, 2942, 4045, 4852 |
| Bbv12I | GWGCWC | 6 cut(s) | 48, 1574, 1784, 2006, 2820, 5152 |
| BceAI | ACGGC | 5 cut(s) | 384, 2477, 4004, 4124, 4905 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2900, 2934, 3921, 3955 |
| BciT130I | CCWGG | 9 cut(s) | 807, 1503, 2739, 2906, 3563, 4563, 4944, 5076, 5448 |
| BciVI | GTATCC | 3 cut(s) | 1662, 1692, 2410 |
| BclI | TGATCA | 3 cut(s) | 970, 1030, 3193 |
| BcoDI | GTCTC | 4 cut(s) | 62, 281, 3146, 4890 |
| BcuI | ACTAGT | 1 cut(s) | 1945 |
| BfmI | CTRYAG | 8 cut(s) | 1242, 1712, 4032, 4332, 4599, 4611, 5503, 5681 |
| BfoI | RGCGCY | 1 cut(s) | 2941 |
| BfuAI | ACCTGC | 5 cut(s) | 831, 982, 1618, 2902, 3473 |
| BfuI | GTATCC | 3 cut(s) | 1662, 1692, 2410 |
| BglII | AGATCT | 5 cut(s) | 784, 2606, 3023, 3817, 4303 |
| BlpI | GCTNAGC | 2 cut(s) | 1740, 2805 |
| BmcAI | AGTACT | 1 cut(s) | 4678 |
| Bme1390I | CCNGG | 9 cut(s) | 807, 1503, 2739, 2906, 3563, 4563, 4944, 5076, 5448 |
| Bme18I | GGWCC | 5 cut(s) | 203, 2778, 3745, 4866, 5382 |
| BmeT110I | CYCGRG | 1 cut(s) | 4853 |
| BmgBI | CACGTC | 5 cut(s) | 3002, 3326, 4975, 5420, 5673 |
| BmgT120I | GGNCC | 9 cut(s) | 78, 203, 295, 1996, 2778, 3404, 3745, 4866, 5382 |
| BmrFI | CCNGG | 9 cut(s) | 807, 1503, 2739, 2906, 3563, 4563, 4944, 5076, 5448 |
| BmrI | ACTGGG | 1 cut(s) | 3216 |
| BmuI | ACTGGG | 1 cut(s) | 3216 |
| BoxI | GACNNNNGTC | 1 cut(s) | 273 |
| BpiI | GAAGAC | 4 cut(s) | 240, 2942, 4045, 4852 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1921, 1953 |
| BpmI | CTGGAG | 6 cut(s) | 50, 828, 1139, 1787, 2927, 4914 |
| Bpu10I | CCTNAGC | 2 cut(s) | 25, 405 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1740, 2805 |
| Bpu14I | TTCGAA | 2 cut(s) | 231, 2479 |
| BpuEI | CTTGAG | 7 cut(s) | 158, 962, 1547, 1724, 2372, 3758, 4078 |
| Bsa29I | ATCGAT | 1 cut(s) | 1228 |
| BsaAI | YACGTR | 1 cut(s) | 3293 |
| BsaBI | GATNNNNATC | 1 cut(s) | 590 |
| BsaHI | GRCGYC | 2 cut(s) | 150, 183 |
| BsaI | GGTCTC | 3 cut(s) | 62, 281, 4890 |
| BsaWI | WCCGGW | 1 cut(s) | 3217 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3975, 4005 |
| Bse118I | RCCGGY | 1 cut(s) | 1155 |
| Bse1I | ACTGG | 4 cut(s) | 1999, 2434, 3211, 3815 |
| Bse3DI | GCAATG | 2 cut(s) | 4477, 5134 |
| Bse8I | GATNNNNATC | 1 cut(s) | 590 |
| BseBI | CCWGG | 9 cut(s) | 807, 1503, 2739, 2906, 3563, 4563, 4944, 5076, 5448 |
| BseCI | ATCGAT | 1 cut(s) | 1228 |
| BseJI | GATNNNNATC | 1 cut(s) | 590 |
| BseMI | GCAATG | 2 cut(s) | 4477, 5134 |
| BseNI | ACTGG | 4 cut(s) | 1999, 2434, 3211, 3815 |
| BseRI | GAGGAG | 6 cut(s) | 91, 94, 114, 1455, 3365, 3755 |
| BseSI | GKGCMC | 2 cut(s) | 1784, 1842 |
| BsgI | GTGCAG | 4 cut(s) | 1898, 2311, 3057, 3912 |
| BshFI | GGCC | 5 cut(s) | 79, 297, 1998, 3406, 4019 |
| BshNI | GGYRCC | 3 cut(s) | 1589, 3243, 4081 |
| BshVI | ATCGAT | 1 cut(s) | 1228 |
| BsiHKAI | GWGCWC | 6 cut(s) | 48, 1574, 1784, 2006, 2820, 5152 |
| BsiHKCI | CYCGRG | 1 cut(s) | 4853 |
| BsiSI | CCGG | 4 cut(s) | 206, 1156, 3218, 5476 |
| BsmAI | GTCTC | 4 cut(s) | 62, 281, 3146, 4890 |
| BsmI | GAATGC | 1 cut(s) | 3100 |
| BsnI | GGCC | 5 cut(s) | 79, 297, 1998, 3406, 4019 |
| Bso31I | GGTCTC | 3 cut(s) | 62, 281, 4890 |
| BsoBI | CYCGRG | 1 cut(s) | 4853 |
| Bsp119I | TTCGAA | 2 cut(s) | 231, 2479 |
| Bsp1286I | GDGCHC | 8 cut(s) | 48, 1574, 1784, 1842, 2006, 2820, 3736, 5152 |
| Bsp1407I | TGTACA | 2 cut(s) | 2749, 2766 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1740, 2805 |
| Bsp19I | CCATGG | 2 cut(s) | 3698, 5363 |
| BspACI | CCGC | 8 cut(s) | 310, 315, 343, 1708, 2706, 3848, 4792, 5473 |
| BspANI | GGCC | 5 cut(s) | 79, 297, 1998, 3406, 4019 |
| BspDI | ATCGAT | 1 cut(s) | 1228 |
| BspHI | TCATGA | 1 cut(s) | 1960 |
| BspMAI | CTGCAG | 1 cut(s) | 4336 |
| BspMI | ACCTGC | 5 cut(s) | 831, 982, 1618, 2902, 3473 |
| BspQI | GCTCTTC | 2 cut(s) | 443, 3078 |
| BspT104I | TTCGAA | 2 cut(s) | 231, 2479 |
| BspT107I | GGYRCC | 3 cut(s) | 1589, 3243, 4081 |
| BspTNI | GGTCTC | 3 cut(s) | 62, 281, 4890 |
| BsrBI | CCGCTC | 2 cut(s) | 312, 1708 |
| BsrDI | GCAATG | 2 cut(s) | 4477, 5134 |
| BsrFI | RCCGGY | 1 cut(s) | 1155 |
| BsrGI | TGTACA | 2 cut(s) | 2749, 2766 |
| BsrI | ACTGG | 4 cut(s) | 1999, 2434, 3211, 3815 |
| BssAI | RCCGGY | 1 cut(s) | 1155 |
| BssNI | GRCGYC | 2 cut(s) | 150, 183 |
| BssSI | CACGAG | 2 cut(s) | 260, 362 |
| BssT1I | CCWWGG | 5 cut(s) | 597, 3698, 4775, 4900, 5363 |
| Bst2BI | CACGAG | 2 cut(s) | 260, 362 |
| Bst2UI | CCWGG | 9 cut(s) | 807, 1503, 2739, 2906, 3563, 4563, 4944, 5076, 5448 |
| Bst6I | CTCTTC | 7 cut(s) | 443, 3014, 3078, 3904, 4253, 5214, 5338 |
| BstACI | GRCGYC | 2 cut(s) | 150, 183 |
| BstAUI | TGTACA | 2 cut(s) | 2749, 2766 |
| BstBAI | YACGTR | 1 cut(s) | 3293 |
| BstBI | TTCGAA | 2 cut(s) | 231, 2479 |
| BstC8I | GCNNGC | 7 cut(s) | 138, 325, 402, 908, 1161, 4095, 4409 |
| BstDSI | CCRYGG | 2 cut(s) | 3698, 5363 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 2909, 2991, 3740, 4779 |
| BstH2I | RGCGCY | 1 cut(s) | 2941 |
| BstHHI | GCGC | 2 cut(s) | 2112, 2940 |
| BstMAI | GTCTC | 4 cut(s) | 62, 281, 3146, 4890 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 191, 2288, 2729, 2815, 2824, 3613, 4045, 4090, 5133 |
| BstNI | CCWGG | 9 cut(s) | 807, 1503, 2739, 2906, 3563, 4563, 4944, 5076, 5448 |
| BstNSI | RCATGY | 4 cut(s) | 965, 2543, 2732, 5180 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 273 |
| BstSCI | CCNGG | 9 cut(s) | 805, 1501, 2737, 2904, 3561, 4561, 4942, 5074, 5446 |
| BstSFI | CTRYAG | 8 cut(s) | 1242, 1712, 4032, 4332, 4599, 4611, 5503, 5681 |
| BstSLI | GKGCMC | 2 cut(s) | 1784, 1842 |
| BstV2I | GAAGAC | 4 cut(s) | 240, 2942, 4045, 4852 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1906, 2429 |
| Bsu15I | ATCGAT | 1 cut(s) | 1228 |
| BsuI | GTATCC | 3 cut(s) | 1662, 1692, 2410 |
| BsuRI | GGCC | 5 cut(s) | 79, 297, 1998, 3406, 4019 |
| BsuTUI | ATCGAT | 1 cut(s) | 1228 |
| BtgI | CCRYGG | 2 cut(s) | 3698, 5363 |
| BtrI | CACGTC | 5 cut(s) | 3002, 3326, 4975, 5420, 5673 |
| BtsI | GCAGTG | 3 cut(s) | 450, 1840, 5263 |
| BveI | ACCTGC | 5 cut(s) | 831, 982, 1618, 2902, 3473 |
| Cac8I | GCNNGC | 7 cut(s) | 138, 325, 402, 908, 1161, 4095, 4409 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2198 |
| CciI | TCATGA | 1 cut(s) | 1960 |
| CfoI | GCGC | 2 cut(s) | 2112, 2940 |
| Cfr10I | RCCGGY | 1 cut(s) | 1155 |
| Cfr13I | GGNCC | 9 cut(s) | 78, 203, 295, 1996, 2778, 3404, 3745, 4866, 5382 |
| ClaI | ATCGAT | 1 cut(s) | 1228 |
| CseI | GACGC | 5 cut(s) | 158, 191, 245, 884, 4616 |
| DraI | TTTAAA | 3 cut(s) | 15, 1818, 2866 |
| DraIII | CACNNNGTG | 1 cut(s) | 4640 |
| EaeI | YGGCCR | 1 cut(s) | 4017 |
| Eam1104I | CTCTTC | 7 cut(s) | 443, 3014, 3078, 3904, 4253, 5214, 5338 |
| EarI | CTCTTC | 7 cut(s) | 443, 3014, 3078, 3904, 4253, 5214, 5338 |
| EciI | GGCGGA | 2 cut(s) | 304, 5462 |
| Ecl136II | GAGCTC | 2 cut(s) | 46, 2818 |
| Eco130I | CCWWGG | 5 cut(s) | 597, 3698, 4775, 4900, 5363 |
| Eco24I | GRGCYC | 3 cut(s) | 48, 2820, 3736 |
| Eco31I | GGTCTC | 3 cut(s) | 62, 281, 4890 |
| Eco32I | GATATC | 1 cut(s) | 2083 |
| Eco47I | GGWCC | 5 cut(s) | 203, 2778, 3745, 4866, 5382 |
| Eco53kI | GAGCTC | 2 cut(s) | 46, 2818 |
| Eco57I | CTGAAG | 9 cut(s) | 275, 1811, 3141, 3855, 4365, 4455, 4846, 5052, 5238 |
| Eco88I | CYCGRG | 1 cut(s) | 4853 |
| EcoICRI | GAGCTC | 2 cut(s) | 46, 2818 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 2909, 2991, 3740, 4779 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3745 |
| EcoRII | CCWGG | 9 cut(s) | 805, 1501, 2737, 2904, 3561, 4561, 4942, 5074, 5446 |
| EcoRV | GATATC | 1 cut(s) | 2083 |
| EcoT14I | CCWWGG | 5 cut(s) | 597, 3698, 4775, 4900, 5363 |
| EcoT22I | ATGCAT | 4 cut(s) | 2545, 2734, 5178, 5562 |
| EcoT38I | GRGCYC | 3 cut(s) | 48, 2820, 3736 |
| ErhI | CCWWGG | 5 cut(s) | 597, 3698, 4775, 4900, 5363 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2707, 2739, 4037, 4069, 4710, 4742 |
| FauNDI | CATATG | 2 cut(s) | 1488, 4713 |
| FbaI | TGATCA | 3 cut(s) | 970, 1030, 3193 |
| FblI | GTMKAC | 2 cut(s) | 2998, 4005 |
| FriOI | GRGCYC | 3 cut(s) | 48, 2820, 3736 |
| GlaI | GCGC | 2 cut(s) | 2111, 2939 |
| GsuI | CTGGAG | 6 cut(s) | 50, 828, 1139, 1787, 2927, 4914 |
| HaeII | RGCGCY | 1 cut(s) | 2941 |
| HaeIII | GGCC | 5 cut(s) | 79, 297, 1998, 3406, 4019 |
| HapII | CCGG | 4 cut(s) | 206, 1156, 3218, 5476 |
| HgaI | GACGC | 5 cut(s) | 158, 191, 245, 884, 4616 |
| HhaI | GCGC | 2 cut(s) | 2112, 2940 |
| Hin1I | GRCGYC | 2 cut(s) | 150, 183 |
| Hin6I | GCGC | 2 cut(s) | 2110, 2938 |
| HinP1I | GCGC | 2 cut(s) | 2110, 2938 |
| HincII | GTYRAC | 3 cut(s) | 3329, 3947, 4190 |
| HindII | GTYRAC | 3 cut(s) | 3329, 3947, 4190 |
| HindIII | AAGCTT | 4 cut(s) | 819, 2855, 3971, 4046 |
| HpaII | CCGG | 4 cut(s) | 206, 1156, 3218, 5476 |
| Hpy99I | CGWCG | 5 cut(s) | 185, 3628, 4548, 4610, 5421 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 191, 2288, 2729, 2815, 2824, 3613, 4045, 4090, 5133 |
| Hsp92I | GRCGYC | 2 cut(s) | 150, 183 |
| HspAI | GCGC | 2 cut(s) | 2110, 2938 |
| Ksp22I | TGATCA | 3 cut(s) | 970, 1030, 3193 |
| LguI | GCTCTTC | 2 cut(s) | 443, 3078 |
| LmnI | GCTCC | 6 cut(s) | 43, 51, 164, 317, 2908, 4290 |
| MbiI | CCGCTC | 2 cut(s) | 312, 1708 |
| MfeI | CAATTG | 3 cut(s) | 1050, 2298, 3365 |
| MhlI | GDGCHC | 8 cut(s) | 48, 1574, 1784, 1842, 2006, 2820, 3736, 5152 |
| MmeI | TCCRAC | 4 cut(s) | 132, 3060, 3772, 5496 |
| Mph1103I | ATGCAT | 4 cut(s) | 2545, 2734, 5178, 5562 |
| MslI | CAYNNNNRTG | 8 cut(s) | 966, 978, 1904, 2011, 3954, 4973, 5181, 5546 |
| MspA1I | CMGCKG | 4 cut(s) | 343, 2393, 2708, 2801 |
| MspI | CCGG | 4 cut(s) | 206, 1156, 3218, 5476 |
| MspR9I | CCNGG | 9 cut(s) | 807, 1503, 2739, 2906, 3563, 4563, 4944, 5076, 5448 |
| MunI | CAATTG | 3 cut(s) | 1050, 2298, 3365 |
| Mva1269I | GAATGC | 1 cut(s) | 3100 |
| MvaI | CCWGG | 9 cut(s) | 807, 1503, 2739, 2906, 3563, 4563, 4944, 5076, 5448 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 191, 2288, 2729, 2815, 2824, 3613, 4045, 4090, 5133 |
| NcoI | CCATGG | 2 cut(s) | 3698, 5363 |
| NdeI | CATATG | 2 cut(s) | 1488, 4713 |
| NmuCI | GTSAC | 7 cut(s) | 364, 512, 526, 1547, 1873, 4233, 5197 |
| NsiI | ATGCAT | 4 cut(s) | 2545, 2734, 5178, 5562 |
| NspI | RCATGY | 4 cut(s) | 965, 2543, 2732, 5180 |
| NspV | TTCGAA | 2 cut(s) | 231, 2479 |
| OliI | CACNNNNGTG | 1 cut(s) | 1904 |
| PagI | TCATGA | 1 cut(s) | 1960 |
| PaqCI | CACCTGC | 3 cut(s) | 982, 1618, 2902 |
| PciI | ACATGT | 1 cut(s) | 961 |
| PciSI | GCTCTTC | 2 cut(s) | 443, 3078 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 267, 360, 3007 |
| PctI | GAATGC | 1 cut(s) | 3100 |
| PfoI | TCCNGGA | 4 cut(s) | 805, 1501, 2737, 3561 |
| Ppu21I | YACGTR | 1 cut(s) | 3293 |
| PpuMI | RGGWCCY | 1 cut(s) | 3745 |
| PscI | ACATGT | 1 cut(s) | 961 |
| PshAI | GACNNNNGTC | 1 cut(s) | 273 |
| PshBI | ATTAAT | 2 cut(s) | 1440, 3863 |
| Psp124BI | GAGCTC | 2 cut(s) | 48, 2820 |
| Psp5II | RGGWCCY | 1 cut(s) | 3745 |
| Psp6I | CCWGG | 9 cut(s) | 805, 1501, 2737, 2904, 3561, 4561, 4942, 5074, 5446 |
| PspGI | CCWGG | 9 cut(s) | 805, 1501, 2737, 2904, 3561, 4561, 4942, 5074, 5446 |
| PspPI | GGNCC | 9 cut(s) | 78, 203, 295, 1996, 2778, 3404, 3745, 4866, 5382 |
| PspPPI | RGGWCCY | 1 cut(s) | 3745 |
| PstI | CTGCAG | 1 cut(s) | 4336 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2198 |
| PvuII | CAGCTG | 2 cut(s) | 2393, 2801 |
| RseI | CAYNNNNRTG | 8 cut(s) | 966, 978, 1904, 2011, 3954, 4973, 5181, 5546 |
| SacI | GAGCTC | 2 cut(s) | 48, 2820 |
| SapI | GCTCTTC | 2 cut(s) | 443, 3078 |
| Sau96I | GGNCC | 9 cut(s) | 78, 203, 295, 1996, 2778, 3404, 3745, 4866, 5382 |
| ScaI | AGTACT | 1 cut(s) | 4678 |
| ScrFI | CCNGG | 9 cut(s) | 807, 1503, 2739, 2906, 3563, 4563, 4944, 5076, 5448 |
| SduI | GDGCHC | 8 cut(s) | 48, 1574, 1784, 1842, 2006, 2820, 3736, 5152 |
| SfcI | CTRYAG | 8 cut(s) | 1242, 1712, 4032, 4332, 4599, 4611, 5503, 5681 |
| SfuI | TTCGAA | 2 cut(s) | 231, 2479 |
| SinI | GGWCC | 5 cut(s) | 203, 2778, 3745, 4866, 5382 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 966, 978, 1904, 2011, 3954, 4973, 5181, 5546 |
| SmlI | CTYRAG | 7 cut(s) | 173, 941, 1526, 1703, 2351, 3737, 4057 |
| SmoI | CTYRAG | 7 cut(s) | 173, 941, 1526, 1703, 2351, 3737, 4057 |
| SpeI | ACTAGT | 1 cut(s) | 1945 |
| SsiI | CCGC | 8 cut(s) | 310, 315, 343, 1708, 2706, 3848, 4792, 5473 |
| SspI | AATATT | 3 cut(s) | 4225, 4693, 5358 |
| SstI | GAGCTC | 2 cut(s) | 48, 2820 |
| StyD4I | CCNGG | 9 cut(s) | 805, 1501, 2737, 2904, 3561, 4561, 4942, 5074, 5446 |
| StyI | CCWWGG | 5 cut(s) | 597, 3698, 4775, 4900, 5363 |
| TaqII | GACCGA | 2 cut(s) | 1685, 1824 |
| TatI | WGTACW | 7 cut(s) | 2038, 2400, 2749, 2766, 3995, 4676, 5485 |
| TauI | GCSGC | 2 cut(s) | 1711, 2708 |
| TseFI | GTSAC | 7 cut(s) | 364, 512, 526, 1547, 1873, 4233, 5197 |
| Tsp45I | GTSAC | 7 cut(s) | 364, 512, 526, 1547, 1873, 4233, 5197 |
| TspGWI | ACGGA | 7 cut(s) | 151, 510, 1017, 3346, 4277, 4736, 5630 |
| VneI | GTGCAC | 1 cut(s) | 1780 |
| VpaK11BI | GGWCC | 5 cut(s) | 203, 2778, 3745, 4866, 5382 |
| VspI | ATTAAT | 2 cut(s) | 1440, 3863 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 2909, 2991, 3740, 4779 |
| XceI | RCATGY | 4 cut(s) | 965, 2543, 2732, 5180 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 5361 |
| XmiI | GTMKAC | 2 cut(s) | 2998, 4005 |
| ZrmI | AGTACT | 1 cut(s) | 4678 |
| Zsp2I | ATGCAT | 4 cut(s) | 2545, 2734, 5178, 5562 |