Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8516753.1

Orthogroup ID

OG0004044

Physical Location & Seq

Genomic Coordinates Reverse (-)

209 .. 4401

Gene Structure 4193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8516753.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2214 bp

atgaaaagaatggcatctctgaaaagtaacagaaagttcagattagctgtaatgaggctttgtaacattctcagtgaacgatatgcaaagatcttggaaaagactcagaacaggtcactgaacaaagatgattgcaatctgcttttgcgagattcaataggtgaaggtcatgacagcaaacttcccaatatcagtgagcataatccagagacaggtcttcaggaagaaccatgggatgattttgatgacgtttatgttaaaaagtcccttgaggaggtacttcaccacaagaggttggccaaatttgatgcctccaaaagagttggatctaccggtgaggactggtcggatcttaatacaagtgaatgtgatccccaggaatctgaattaattgtatcaactgctccatatgaagatgttcagaatcatggtagcagagaaaaaatttcggcacgaagatcttgctatcaacaccttaatgaaaaatactttaagcttttgcatggagttgatgtcagtacacaagtctacaaatcattagctgtttctaatgctgtagagctgtttaagcttgttttcctcagtacctcaacagcaccagaagtgccaaatctgcttgcaggcattctacggcggtactcagagtgtgatctattcgcagctttcaactatcttagagataaaaagttcatggttggaggtaatggcagtcaaaaattttctctctcacaacagttcttgcataatacttccgcatcaccatttccaattaattctgggaagagagctactaaatttgcccattggctctacgaaaaagataaagatcttatggaagggggcatagatctctccacagatttacagtgtggggacatattccatttgtttgctctagtttcttcaggtgaaatgtcaatttctccatgcttgccagatgagggtgtgggagaggctgaagaatcaagaagctcaaaacgtaaagcagatatcaatgaacttttagatgatgaaaaaactaaaaagctgaaatcatttgtggctgcagaaggtgaaatcatttcccgtcgagaaaaaggtttcccgggtatcacggtatctgtaagtcgtgcagagttttctatagccaattctatagatttgttcaaggaagacgctcctattggtgacaaacattttgggggaaatcatcaactagaatgtacatctgatcagagtagcttatcacattctgactgtatgaaagaaatcttcaattcaggcagtactgtccctgtattggagattggttgcgagtcaccttgggaaggtatggtggcttatgccgaacatttgttgccattacatcctgctcaagatcagtcaagtcccatccagcctgaggtctttaggactgtttacattgctattcagaaagctggcgatcaaggtctgagcatagaagaagtttcccgaataatgaatatcccaggagaaaagatgactgatcttatcattgatgtgcttcagacatttgaacgagtcttaaaggtcaatgcttatgactctattcgtgttgtggattctttgtatcgtggcaagtactttatgacttcagtgtctggaagtaatcaaaaactcgaaccaccttcctggagaaagccactaggcgatgacggccatatactcttcctttcagaaaatcgtgataatggtgctgctccttcagagagggagataaatgctgatgtccataaattgacaattcttaattttcctgaagaggttgacgagccctcatatgtaaaacaaattagcagtgttcctgaaagctatagggaaggaaaaggaggagatgctgaggatgaatcttctaggtcctctaatgatagactatgcatgcctatatttccatggataaatggtgatgggagcactaacaagattgtctacaagggactcaggcgacgtgtgcttggggttgtgatgcaaaatccagctatattagaggatgaaattattcgccggatggatgtattgaatccccagagctgtagaaaattgttggaattgatggttttggataaccatcttcatgtgaggaacatgcatcaaactgcgtgcattgggcccccaccaattttaggtaccctccttggaagcagcttcaaaccgtcaaagctggtttgtcgcgagcactattttgcaaatcccatgagtacatccttgttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B-block_TFIIIC

Protein Analysis

737

Amino Acids

82.66

Weight (kDa)

5.65

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17450 AT1G17450 AT1G17450 AT1G58766 AT1G59077 AT1G59453 AT1G59460 AT1G59470
fragaria_vesca	FvH4_6g34630 FvH4_6g34630 FvH4_6g34630 FvH4_6g34630 FvH4_6g34630 FvH4_6g34630
malus_domestica	MD09G1184300.v1.1
prunus_persica	Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1 Prupe.3G042500_v2.0.a1
pyrus_communis	pycom09g10190
rosa_chinensis	RchiOBHm_Chr2g0145161
rosa_laevigata	RLG00000020130
rosa_multiflora	Rmu_co8516753.1_g000001 Rmu_sc0002506.1_g000034
rosa_roxburghii	Rroxscaffold_2G00100830
rosa_rugosa	Rorug02G0390700 Rorug02G0390800
rosa_samantha	Rh2AG443400 Rh2BG454400 Rh2CG430400 Rh2DG464300
rosa_wichuraiana	Rw2G036260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1597
Acc65I	GGTACC	1 cut(s)	2126
AccB1I	GGYRCC	1 cut(s)	2126
AccI	GTMKAC	2 cut(s)	528, 1929
AccII	CGCG	1 cut(s)	2172
AciI	CCGC	2 cut(s)	634, 753
AclWI	GGATC	3 cut(s)	334, 357, 365
AcoI	YGGCCR	2 cut(s)	297, 1657
AcsI	RAATTY	4 cut(s)	302, 444, 716, 794
AcuI	CTGAAG	7 cut(s)	203, 888, 978, 1490, 1578, 1689, 1779
AfaI	GTAC	9 cut(s)	279, 520, 586, 638, 1204, 1267, 1583, 2128, 2200
AfiI	CCNNNNNNNGG	7 cut(s)	212, 274, 941, 1279, 1307, 1381, 2123
AflIII	ACRYGT	1 cut(s)	1948
AgeI	ACCGGT	1 cut(s)	332
AgsI	TTSAA	7 cut(s)	156, 667, 1147, 1255, 1517, 2020, 2149
AjiI	CACGTC	1 cut(s)	1949
AjnI	CCWGG	3 cut(s)	375, 1468, 1631
Alw21I	GWGCWC	2 cut(s)	1916, 2178
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	3 cut(s)	334, 357, 365
AlwNI	CAGNNNCTG	1 cut(s)	1601
Ama87I	CYCGRG	1 cut(s)	1084
AoxI	GGCC	3 cut(s)	297, 1657, 2108
ApaI	GGGCCC	1 cut(s)	2112
ApeKI	GCWGC	4 cut(s)	659, 1043, 1697, 2142
ApoI	RAATTY	4 cut(s)	302, 444, 716, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	1160, 1192
AseI	ATTAAT	2 cut(s)	389, 771
AsiGI	ACCGGT	1 cut(s)	332
Asp700I	GAANNNNTTC	2 cut(s)	417, 1998
Asp718I	GGTACC	1 cut(s)	2126
AspS9I	GGNCC	3 cut(s)	1857, 2108, 2109
AsuC2I	CCSGG	2 cut(s)	1085, 1086
AsuHPI	GGTGA	9 cut(s)	173, 275, 347, 750, 920, 1064, 1178, 1290, 1916
AvaI	CYCGRG	1 cut(s)	1084
AvaII	GGWCC	1 cut(s)	1857
AxyI	CCTNAGG	1 cut(s)	1380
BaeGI	GKGCMC	1 cut(s)	2112
BalI	TGGCCA	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	2126
BanII	GRGCYC	2 cut(s)	1776, 2112
BbsI	GAAGAC	2 cut(s)	209, 1158
Bbv12I	GWGCWC	2 cut(s)	1916, 2178
BbvCI	CCTCAGC	1 cut(s)	1839
BbvI	GCAGC	4 cut(s)	671, 1030, 1684, 2154
BccI	CCATC	5 cut(s)	1379, 1901, 2002, 2047, 2076
BceAI	ACGGC	2 cut(s)	647, 1672
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	3 cut(s)	377, 1470, 1633
BclI	TGATCA	1 cut(s)	1210
BcnI	CCSGG	2 cut(s)	1085, 1086
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	4 cut(s)	896, 1196, 1646, 1854
BfmI	CTRYAG	6 cut(s)	555, 1044, 1122, 1134, 1813, 2032
BglII	AGATCT	4 cut(s)	90, 458, 826, 847
BisI	GCNGC	4 cut(s)	660, 1044, 1698, 2143
BlsI	GCNGC	4 cut(s)	661, 1045, 1699, 2144
BmcAI	AGTACT	2 cut(s)	1267, 1583
Bme1390I	CCNGG	5 cut(s)	377, 1085, 1086, 1470, 1633
Bme18I	GGWCC	1 cut(s)	1857
BmeT110I	CYCGRG	1 cut(s)	1084
BmgBI	CACGTC	1 cut(s)	1949
BmgT120I	GGNCC	3 cut(s)	1857, 2108, 2109
BmiI	GGNNCC	3 cut(s)	2110, 2111, 2128
BmrFI	CCNGG	5 cut(s)	377, 1085, 1086, 1470, 1633
BmsI	GCATC	6 cut(s)	23, 298, 764, 1825, 1956, 2098
BpiI	GAAGAC	2 cut(s)	209, 1158
BpmI	CTGGAG	1 cut(s)	1654
Bpu10I	CCTNAGC	1 cut(s)	1839
BpuEI	CTTGAG	2 cut(s)	290, 1338
BpuMI	CCSGG	2 cut(s)	1085, 1086
BsaBI	GATNNNNATC	3 cut(s)	135, 825, 2067
BsaJI	CCNNGG	7 cut(s)	230, 375, 1084, 1301, 1468, 1892, 2134
BsaWI	WCCGGW	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	7 cut(s)	212, 274, 941, 1279, 1307, 1381, 2123
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	347
Bse21I	CCTNAGG	1 cut(s)	1380
Bse3DI	GCAATG	1 cut(s)	1401
Bse8I	GATNNNNATC	3 cut(s)	135, 825, 2067
BseBI	CCWGG	3 cut(s)	377, 1470, 1633
BseDI	CCNNGG	7 cut(s)	230, 375, 1084, 1301, 1468, 1892, 2134
BseGI	GGATG	8 cut(s)	241, 1345, 1371, 1849, 1996, 2013, 2017, 2201
BseJI	GATNNNNATC	3 cut(s)	135, 825, 2067
BseLI	CCNNNNNNNGG	7 cut(s)	212, 274, 941, 1279, 1307, 1381, 2123
BseMI	GCAATG	1 cut(s)	1401
BseMII	CTCAG	8 cut(s)	85, 119, 595, 654, 1371, 1424, 1830, 1954
BseNI	ACTGG	1 cut(s)	347
BseRI	GAGGAG	2 cut(s)	287, 1845
BseSI	GKGCMC	1 cut(s)	2112
BseXI	GCAGC	4 cut(s)	671, 1030, 1684, 2154
BsgI	GTGCAG	1 cut(s)	1131
Bsh1236I	CGCG	1 cut(s)	2172
BshFI	GGCC	3 cut(s)	299, 1659, 2110
BshNI	GGYRCC	1 cut(s)	2126
BshTI	ACCGGT	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	1916, 2178
BsiHKCI	CYCGRG	1 cut(s)	1084
BsiSI	CCGG	3 cut(s)	333, 1085, 2005
BslFI	GGGAC	5 cut(s)	250, 887, 1256, 1353, 1950
BslI	CCNNNNNNNGG	7 cut(s)	212, 274, 941, 1279, 1307, 1381, 2123
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	5 cut(s)	250, 887, 1256, 1353, 1950
BsmI	GAATGC	1 cut(s)	624
BsnI	GGCC	3 cut(s)	299, 1659, 2110
BsoBI	CYCGRG	1 cut(s)	1084
Bsp120I	GGGCCC	1 cut(s)	2108
Bsp1286I	GDGCHC	4 cut(s)	1776, 1916, 2112, 2178
Bsp1407I	TGTACA	1 cut(s)	1202
Bsp19I	CCATGG	2 cut(s)	230, 1892
Bsp68I	TCGCGA	1 cut(s)	2172
BspACI	CCGC	2 cut(s)	634, 753
BspANI	GGCC	3 cut(s)	299, 1659, 2110
BspCNI	CTCAG	8 cut(s)	84, 118, 594, 653, 1372, 1425, 1831, 1953
BspFNI	CGCG	1 cut(s)	2172
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	2110, 2111, 2128
BspMAI	CTGCAG	1 cut(s)	1048
BspPI	GGATC	3 cut(s)	334, 357, 365
BspT107I	GGYRCC	1 cut(s)	2126
BsrDI	GCAATG	1 cut(s)	1401
BsrFI	RCCGGY	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	1202
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	7 cut(s)	230, 375, 1084, 1301, 1468, 1892, 2134
BssT1I	CCWWGG	4 cut(s)	230, 1301, 1892, 2134
Bst2UI	CCWGG	3 cut(s)	377, 1470, 1633
Bst4CI	ACNGT	7 cut(s)	735, 867, 1096, 1238, 1270, 1396, 2154
Bst6I	CTCTTC	3 cut(s)	776, 1673, 1755
BstAUI	TGTACA	1 cut(s)	1202
BstC8I	GCNNGC	7 cut(s)	618, 622, 932, 1420, 1880, 2101, 2174
BstDEI	CTNAG	9 cut(s)	71, 105, 581, 640, 674, 1380, 1433, 1839, 1940
BstDSI	CCRYGG	2 cut(s)	230, 1892
BstENI	CCTNNNNNAGG	2 cut(s)	272, 1305
BstF5I	GGATG	8 cut(s)	241, 1345, 1371, 1849, 1996, 2013, 2017, 2201
BstFNI	CGCG	1 cut(s)	2172
BstMAI	GTCTC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	4 cut(s)	568, 613, 1656, 1951
BstNI	CCWGG	3 cut(s)	377, 1470, 1633
BstNSI	RCATGY	2 cut(s)	1882, 2089
BstSCI	CCNGG	5 cut(s)	375, 1083, 1084, 1468, 1631
BstSFI	CTRYAG	6 cut(s)	555, 1044, 1122, 1134, 1813, 2032
BstSLI	GKGCMC	1 cut(s)	2112
BstUI	CGCG	1 cut(s)	2172
BstV1I	GCAGC	4 cut(s)	671, 1030, 1684, 2154
BstV2I	GAAGAC	2 cut(s)	209, 1158
BstX2I	RGATCY	6 cut(s)	90, 326, 349, 458, 826, 847
BstXI	CCANNNNNNTGG	1 cut(s)	1632
BstYI	RGATCY	6 cut(s)	90, 326, 349, 458, 826, 847
Bsu36I	CCTNAGG	1 cut(s)	1380
BsuRI	GGCC	3 cut(s)	299, 1659, 2110
BtgI	CCRYGG	2 cut(s)	230, 1892
BtgZI	GCGATG	1 cut(s)	1665
BtrI	CACGTC	1 cut(s)	1949
BtsCI	GGATG	8 cut(s)	241, 1345, 1371, 1849, 1996, 2013, 2017, 2201
BtsI	GCAGTG	1 cut(s)	1804
BtsIMutI	CAGTG	6 cut(s)	79, 116, 199, 872, 1602, 1804
BtuMI	TCGCGA	1 cut(s)	2172
Cac8I	GCNNGC	7 cut(s)	618, 622, 932, 1420, 1880, 2101, 2174
CaiI	CAGNNNCTG	1 cut(s)	1601
CciI	TCATGA	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	3 cut(s)	1857, 2108, 2109
Cfr9I	CCCGGG	1 cut(s)	1084
CseI	GACGC	1 cut(s)	1163
Csp6I	GTAC	9 cut(s)	278, 519, 585, 637, 1203, 1266, 1582, 2127, 2199
CspAI	ACCGGT	1 cut(s)	332
CviQI	GTAC	9 cut(s)	278, 519, 585, 637, 1203, 1266, 1582, 2127, 2199
DdeI	CTNAG	9 cut(s)	71, 105, 581, 640, 674, 1380, 1433, 1839, 1940
DrdI	GACNNNNNNGTC	1 cut(s)	1597
DseDI	GACNNNNNNGTC	1 cut(s)	1597
EaeI	YGGCCR	2 cut(s)	297, 1657
Eam1104I	CTCTTC	3 cut(s)	776, 1673, 1755
EarI	CTCTTC	3 cut(s)	776, 1673, 1755
Eco130I	CCWWGG	4 cut(s)	230, 1301, 1892, 2134
Eco24I	GRGCYC	2 cut(s)	1776, 2112
Eco32I	GATATC	1 cut(s)	991
Eco47I	GGWCC	1 cut(s)	1857
Eco57I	CTGAAG	7 cut(s)	203, 888, 978, 1490, 1578, 1689, 1779
Eco81I	CCTNAGG	1 cut(s)	1380
Eco88I	CYCGRG	1 cut(s)	1084
EcoNI	CCTNNNNNAGG	2 cut(s)	272, 1305
EcoO109I	RGGNCCY	2 cut(s)	1857, 2109
EcoRII	CCWGG	3 cut(s)	375, 1468, 1631
EcoRV	GATATC	1 cut(s)	991
EcoT14I	CCWWGG	4 cut(s)	230, 1301, 1892, 2134
EcoT22I	ATGCAT	2 cut(s)	1880, 2091
EcoT38I	GRGCYC	2 cut(s)	1776, 2112
ErhI	CCWWGG	4 cut(s)	230, 1301, 1892, 2134
FaqI	GGGAC	5 cut(s)	250, 887, 1256, 1353, 1950
FauNDI	CATATG	2 cut(s)	409, 1780
FbaI	TGATCA	1 cut(s)	1210
FblI	GTMKAC	2 cut(s)	528, 1929
Fnu4HI	GCNGC	4 cut(s)	660, 1044, 1698, 2143
FokI	GGATG	8 cut(s)	248, 1332, 1358, 1856, 2003, 2020, 2024, 2188
FriOI	GRGCYC	2 cut(s)	1776, 2112
Fsp4HI	GCNGC	4 cut(s)	660, 1044, 1698, 2143
FspBI	CTAG	4 cut(s)	896, 1196, 1646, 1854
GluI	GCNGC	4 cut(s)	660, 1044, 1698, 2143
GsuI	CTGGAG	1 cut(s)	1654
HaeIII	GGCC	3 cut(s)	299, 1659, 2110
HapII	CCGG	3 cut(s)	333, 1085, 2005
HgaI	GACGC	1 cut(s)	1163
HincII	GTYRAC	1 cut(s)	1768
HindII	GTYRAC	1 cut(s)	1768
HindIII	AAGCTT	2 cut(s)	494, 569
HpaII	CCGG	3 cut(s)	333, 1085, 2005
HphI	GGTGA	9 cut(s)	173, 275, 347, 750, 920, 1064, 1178, 1290, 1916
Hpy166II	GTNNAC	6 cut(s)	77, 521, 529, 1399, 1768, 1930
Hpy8I	GTNNAC	6 cut(s)	77, 521, 529, 1399, 1768, 1930
Hpy99I	CGWCG	2 cut(s)	1071, 1950
HpyAV	CCTTC	7 cut(s)	158, 830, 1043, 1301, 1638, 1713, 1814
HpyCH4III	ACNGT	7 cut(s)	735, 867, 1096, 1238, 1270, 1396, 2154
HpyCH4IV	ACGT	3 cut(s)	249, 979, 1948
HpyF10VI	GCNNNNNNNGC	4 cut(s)	568, 613, 1656, 1951
HpyF3I	CTNAG	9 cut(s)	71, 105, 581, 640, 674, 1380, 1433, 1839, 1940
HpySE526I	ACGT	3 cut(s)	249, 979, 1948
KpnI	GGTACC	1 cut(s)	2130
Ksp22I	TGATCA	1 cut(s)	1210
LmnI	GCTCC	4 cut(s)	409, 1162, 1705, 1911
Lsp1109I	GCAGC	4 cut(s)	671, 1030, 1684, 2154
LweI	GCATC	6 cut(s)	23, 298, 764, 1825, 1956, 2098
MaeI	CTAG	4 cut(s)	896, 1196, 1646, 1854
MaeII	ACGT	3 cut(s)	249, 979, 1948
MaeIII	GTNAC	5 cut(s)	26, 62, 114, 1166, 1296
MflI	RGATCY	6 cut(s)	90, 326, 349, 458, 826, 847
MhlI	GDGCHC	4 cut(s)	1776, 1916, 2112, 2178
MlsI	TGGCCA	1 cut(s)	299
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	5 cut(s)	97, 1304, 1530, 1538, 1932
MmeI	TCCRAC	4 cut(s)	304, 327, 676, 2025
Mox20I	TGGCCA	1 cut(s)	299
Mph1103I	ATGCAT	2 cut(s)	1880, 2091
MroXI	GAANNNNTTC	2 cut(s)	417, 1998
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	9 cut(s)	258, 354, 389, 477, 492, 567, 771, 1526, 1749
MslI	CAYNNNNRTG	3 cut(s)	477, 1499, 2073
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	3 cut(s)	333, 1085, 2005
MspR9I	CCNGG	5 cut(s)	377, 1085, 1086, 1470, 1633
Mva1269I	GAATGC	1 cut(s)	624
MvaI	CCWGG	3 cut(s)	377, 1470, 1633
MvnI	CGCG	1 cut(s)	2172
MwoI	GCNNNNNNNGC	4 cut(s)	568, 613, 1656, 1951
NciI	CCSGG	2 cut(s)	1085, 1086
NcoI	CCATGG	2 cut(s)	230, 1892
NdeI	CATATG	2 cut(s)	409, 1780
NlaIV	GGNNCC	3 cut(s)	2110, 2111, 2128
NmuCI	GTSAC	3 cut(s)	114, 1166, 1296
NruI	TCGCGA	1 cut(s)	2172
NsiI	ATGCAT	2 cut(s)	1880, 2091
NspI	RCATGY	2 cut(s)	1882, 2089
PaeI	GCATGC	1 cut(s)	1882
PagI	TCATGA	1 cut(s)	169
PctI	GAATGC	1 cut(s)	624
PdmI	GAANNNNTTC	2 cut(s)	417, 1998
PfeI	GAWTC	7 cut(s)	152, 380, 424, 962, 1562, 1847, 2020
PfoI	TCCNGGA	1 cut(s)	1631
PinAI	ACCGGT	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	661, 1045, 1699, 2144
PleI	GAGTC	5 cut(s)	97, 1303, 1529, 1538, 1932
PpsI	GAGTC	5 cut(s)	97, 1303, 1529, 1538, 1932
PpuMI	RGGWCCY	1 cut(s)	1857
PshBI	ATTAAT	2 cut(s)	389, 771
Psp5II	RGGWCCY	1 cut(s)	1857
Psp6I	CCWGG	3 cut(s)	375, 1468, 1631
PspGI	CCWGG	3 cut(s)	375, 1468, 1631
PspN4I	GGNNCC	3 cut(s)	2110, 2111, 2128
PspOMI	GGGCCC	1 cut(s)	2108
PspPI	GGNCC	3 cut(s)	1857, 2108, 2109
PspPPI	RGGWCCY	1 cut(s)	1857
PstI	CTGCAG	1 cut(s)	1048
PstNI	CAGNNNCTG	1 cut(s)	1601
PsuI	RGATCY	6 cut(s)	90, 326, 349, 458, 826, 847
RruI	TCGCGA	1 cut(s)	2172
RsaI	GTAC	9 cut(s)	279, 520, 586, 638, 1204, 1267, 1583, 2128, 2200
RsaNI	GTAC	9 cut(s)	278, 519, 585, 637, 1203, 1266, 1582, 2127, 2199
RseI	CAYNNNNRTG	3 cut(s)	477, 1499, 2073
SaqAI	TTAA	9 cut(s)	258, 354, 389, 477, 492, 567, 771, 1526, 1749
SatI	GCNGC	4 cut(s)	660, 1044, 1698, 2143
Sau96I	GGNCC	3 cut(s)	1857, 2108, 2109
ScaI	AGTACT	2 cut(s)	1267, 1583
SchI	GAGTC	5 cut(s)	97, 1304, 1530, 1538, 1932
ScrFI	CCNGG	5 cut(s)	377, 1085, 1086, 1470, 1633
SduI	GDGCHC	4 cut(s)	1776, 1916, 2112, 2178
SfaNI	GCATC	6 cut(s)	23, 298, 764, 1825, 1956, 2098
SfcI	CTRYAG	6 cut(s)	555, 1044, 1122, 1134, 1813, 2032
SinI	GGWCC	1 cut(s)	1857
SmaI	CCCGGG	1 cut(s)	1086
SmiMI	CAYNNNNRTG	3 cut(s)	477, 1499, 2073
SmlI	CTYRAG	2 cut(s)	269, 1353
SmoI	CTYRAG	2 cut(s)	269, 1353
SphI	GCATGC	1 cut(s)	1882
SsiI	CCGC	2 cut(s)	634, 753
SspMI	CTAG	4 cut(s)	896, 1196, 1646, 1854
StyD4I	CCNGG	5 cut(s)	375, 1083, 1084, 1468, 1631
StyI	CCWWGG	4 cut(s)	230, 1301, 1892, 2134
TaaI	ACNGT	7 cut(s)	735, 867, 1096, 1238, 1270, 1396, 2154
TaiI	ACGT	3 cut(s)	252, 982, 1951
TaqI	TCGA	2 cut(s)	1069, 1620
TatI	WGTACW	5 cut(s)	518, 1202, 1265, 1581, 2198
TfiI	GAWTC	7 cut(s)	152, 380, 424, 962, 1562, 1847, 2020
Tru1I	TTAA	9 cut(s)	258, 354, 389, 477, 492, 567, 771, 1526, 1749
Tru9I	TTAA	9 cut(s)	258, 354, 389, 477, 492, 567, 771, 1526, 1749
TscAI	CASTG	6 cut(s)	79, 123, 199, 872, 1602, 1804
TseFI	GTSAC	3 cut(s)	114, 1166, 1296
TseI	GCWGC	4 cut(s)	659, 1043, 1697, 2142
Tsp45I	GTSAC	3 cut(s)	114, 1166, 1296
TspMI	CCCGGG	1 cut(s)	1084
TspRI	CASTG	6 cut(s)	79, 123, 199, 872, 1602, 1804
VpaK11BI	GGWCC	1 cut(s)	1857
VspI	ATTAAT	2 cut(s)	389, 771
XagI	CCTNNNNNAGG	2 cut(s)	272, 1305
XapI	RAATTY	4 cut(s)	302, 444, 716, 794
XceI	RCATGY	2 cut(s)	1882, 2089
XmaI	CCCGGG	1 cut(s)	1084
XmiI	GTMKAC	2 cut(s)	528, 1929
XmnI	GAANNNNTTC	2 cut(s)	417, 1998
XspI	CTAG	4 cut(s)	896, 1196, 1646, 1854
ZrmI	AGTACT	2 cut(s)	1267, 1583
Zsp2I	ATGCAT	2 cut(s)	1880, 2091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.